Wall clock time and date at job start Mon Mar 30 2020 07:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.36398 * 123.12198 * 233.35576 * 3 2 1 5 5 S 1.76206 * 124.54448 * 359.73610 * 4 3 2 6 6 S 1.75199 * 110.91040 * 180.02562 * 4 3 2 7 7 C 1.75859 * 92.63837 * 0.02562 * 6 4 3 8 8 C 1.39000 * 110.55814 * 359.97438 * 7 6 4 9 9 C 1.41006 * 119.16810 * 179.97438 * 8 7 6 10 10 C 1.37979 * 120.99352 * 0.03824 * 9 8 7 11 11 C 1.37734 * 120.60065 * 359.96044 * 10 9 8 12 12 C 1.40448 * 119.81665 * 0.02562 * 11 10 9 13 13 C 1.40986 * 120.05515 * 179.97438 * 12 11 10 14 14 H 1.08006 * 120.00062 * 205.01585 * 13 12 11 15 15 C 1.39926 * 119.99825 * 25.00627 * 13 12 11 16 16 N 1.30866 * 120.00233 * 17.89175 * 15 13 12 17 17 Si 1.86805 * 119.99839 * 197.88644 * 15 13 12 18 18 H 1.48505 * 109.46915 * 90.00756 * 17 15 13 19 19 H 1.48501 * 109.46967 * 210.00131 * 17 15 13 20 20 H 1.48492 * 109.47381 * 330.00461 * 17 15 13 21 21 H 1.41006 * 99.99619 * 90.00298 * 5 4 3 22 22 H 1.08000 * 119.50575 * 179.97438 * 9 8 7 23 23 H 1.07992 * 119.70062 * 180.02562 * 10 9 8 24 24 H 1.07995 * 120.08935 * 179.97438 * 11 10 9 25 25 H 0.96996 * 120.00599 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3130 0.6828 0.9166 5 16 2.6430 1.6606 2.2203 6 16 5.0255 0.4629 0.6188 7 6 4.7335 -0.5713 -0.7732 8 6 3.3690 -0.7306 -0.9853 9 6 2.9294 -1.5294 -2.0609 10 6 3.8316 -2.1512 -2.8994 11 6 5.1871 -2.0040 -2.7037 12 6 5.6577 -1.2149 -1.6415 13 6 7.0441 -1.0612 -1.4363 14 1 7.4213 -0.8231 -0.4527 15 6 7.9313 -1.2175 -2.5070 16 7 7.4895 -1.1561 -3.7373 17 14 9.7466 -1.5134 -2.1801 18 1 10.0000 -2.9733 -2.0807 19 1 10.5489 -0.9465 -3.2937 20 1 10.1338 -0.8559 -0.9063 21 1 2.5452 0.6844 3.2331 22 1 1.8704 -1.6572 -2.2304 23 1 3.4719 -2.7579 -3.7171 24 1 5.8860 -2.4948 -3.3648 25 1 8.1046 -1.2640 -4.4795 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396219770.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:52 Heat of formation + Delta-G solvation = 51.784860 kcal Electronic energy + Delta-G solvation = -13929.984243 eV Core-core repulsion = 11511.300112 eV Total energy + Delta-G solvation = -2418.684131 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.04170 -37.94981 -36.26270 -34.83463 -31.91452 -30.07923 -27.50822 -25.55930 -23.27754 -22.55558 -20.06678 -18.71202 -18.27891 -17.47028 -16.77203 -16.47002 -15.94628 -15.40890 -15.22999 -14.68645 -14.42480 -14.05570 -13.90127 -13.71536 -13.23668 -12.98256 -12.81895 -12.57604 -12.34599 -12.11290 -11.89466 -11.46186 -11.25832 -11.10711 -10.16013 -9.30641 -9.27710 -8.80021 -8.60104 -6.40113 -0.75705 0.19778 0.66310 0.74020 0.95984 1.19525 1.42741 1.48515 1.53018 1.55041 1.57994 2.18687 2.27660 2.69167 2.93330 3.52281 3.96657 4.37709 4.54912 4.62489 4.92320 5.14020 5.17281 5.36887 5.60451 5.84609 6.03029 6.12236 6.33335 6.51996 6.74258 6.80977 8.21154 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.027195 B = 0.006852 C = 0.005567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.337529 B = 4085.331586 C = 5028.476563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.296 3.704 3 C -0.001 4.001 4 C -0.156 4.156 5 S -0.072 6.072 6 S 0.193 5.807 7 C -0.238 4.238 8 C -0.031 4.031 9 C -0.224 4.224 10 C -0.075 4.075 11 C -0.191 4.191 12 C 0.122 3.878 13 C -0.476 4.476 14 H 0.085 0.915 15 C 0.043 3.957 16 N -0.803 5.803 17 Si 0.979 3.021 18 H -0.261 1.261 19 H -0.268 1.268 20 H -0.255 1.255 21 H 0.127 0.873 22 H 0.108 0.892 23 H 0.123 0.877 24 H 0.116 0.884 25 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 1.338 6.177 6.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.020 4.020 3 C -0.027 4.027 4 C -0.390 4.390 5 S 0.082 5.918 6 S 0.461 5.539 7 C -0.355 4.355 8 C -0.039 4.039 9 C -0.246 4.246 10 C -0.094 4.094 11 C -0.214 4.214 12 C 0.117 3.883 13 C -0.504 4.504 14 H 0.103 0.897 15 C -0.176 4.176 16 N -0.427 5.427 17 Si 0.799 3.201 18 H -0.185 1.185 19 H -0.192 1.192 20 H -0.179 1.179 21 H 0.091 0.909 22 H 0.126 0.874 23 H 0.141 0.859 24 H 0.134 0.866 25 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.280 2.635 7.245 7.714 hybrid contribution 0.198 -1.949 -1.175 2.285 sum -0.082 0.685 6.070 6.109 Atomic orbital electron populations 1.81130 1.11733 1.09512 1.08845 1.24862 0.91614 0.92744 0.92822 1.16589 0.84781 1.02709 0.98589 1.25814 1.01475 1.07228 1.04449 1.86691 1.81884 1.15171 1.08013 1.83578 0.98838 1.46844 1.24602 1.22867 0.95910 1.10106 1.06654 1.18515 0.90604 0.98812 0.95970 1.20320 0.98310 1.06962 0.99024 1.20797 0.93172 0.97819 0.97648 1.21182 0.94604 1.03455 1.02155 1.17318 0.92418 0.88561 0.90032 1.19802 0.91178 1.42494 0.96936 0.89681 1.26712 1.06010 0.91062 0.93769 1.69850 1.40050 1.32208 1.00572 0.85227 0.75512 0.79761 0.79592 1.18536 1.19230 1.17897 0.90856 0.87425 0.85876 0.86633 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -15.99 18.54 19.00 0.35 -15.64 15 2 C 0.30 10.66 14.77 88.33 1.30 11.97 15 3 C 0.00 -0.05 5.90 -20.30 -0.12 -0.17 15 4 C -0.16 -5.22 6.75 67.39 0.46 -4.77 15 5 S -0.07 -1.89 25.56 -56.49 -1.44 -3.33 15 6 S 0.19 6.96 22.70 -56.49 -1.28 5.67 15 7 C -0.24 -10.55 6.33 23.44 0.15 -10.40 15 8 C -0.03 -1.29 6.00 -20.25 -0.12 -1.41 15 9 C -0.22 -9.36 9.83 22.89 0.22 -9.13 15 10 C -0.08 -3.20 9.98 22.09 0.22 -2.98 15 11 C -0.19 -9.04 8.67 22.69 0.20 -8.84 15 12 C 0.12 5.92 5.59 -21.08 -0.12 5.80 15 13 C -0.48 -22.58 8.80 23.35 0.21 -22.37 15 14 H 0.09 3.86 7.70 -2.91 -0.02 3.84 15 15 C 0.04 1.92 5.12 85.25 0.44 2.35 15 16 N -0.80 -37.41 10.98 21.83 0.24 -37.17 15 17 Si 0.98 33.83 29.60 68.60 2.03 35.86 15 18 H -0.26 -8.81 7.11 99.48 0.71 -8.10 15 19 H -0.27 -8.89 7.11 99.48 0.71 -8.18 15 20 H -0.26 -8.62 7.11 99.48 0.71 -7.91 15 21 H 0.13 2.71 9.55 73.80 0.70 3.41 15 22 H 0.11 4.12 8.02 -2.91 -0.02 4.10 15 23 H 0.12 4.49 8.06 -2.91 -0.02 4.46 15 24 H 0.12 5.64 6.17 -2.91 -0.02 5.62 15 25 H 0.29 12.33 8.30 -92.71 -0.77 11.56 15 Total: -1.00 -50.47 264.24 4.70 -45.77 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.97 Total: 8.81 kcal Atomic # 6 Polarization: -42.80 SS G_CDS: 2.83 Total: -39.97 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.59 Total: -52.81 kcal Atomic # 14 Polarization: 33.83 SS G_CDS: 2.03 Total: 35.86 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -2.73 Total: 2.34 kcal Total: -50.47 4.70 -45.77 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396219770.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.554 kcal (2) G-P(sol) polarization free energy of solvation -50.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds