Wall clock time and date at job start Mon Mar 30 2020 07:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.38368 * 119.69001 * 102.05739 * 3 2 1 5 5 C 1.40516 * 119.88345 * 179.69005 * 4 3 2 6 6 C 1.40992 * 120.04388 * 180.21105 * 5 4 3 7 7 H 1.08000 * 119.99814 * 154.19036 * 6 5 4 8 8 C 1.39712 * 119.99829 * 334.18447 * 6 5 4 9 9 N 1.31034 * 120.00272 * 342.84630 * 8 6 5 10 10 Si 1.86805 * 119.99985 * 162.84198 * 8 6 5 11 11 H 1.48499 * 109.46803 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46819 * 120.00105 * 10 8 6 13 13 H 1.48492 * 109.47162 * 240.00090 * 10 8 6 14 14 C 1.41192 * 119.91594 * 0.23511 * 5 4 3 15 15 S 1.76198 * 119.87663 * 180.02562 * 14 5 4 16 16 C 1.41721 * 120.25137 * 359.97438 * 14 5 4 17 17 C 1.45485 * 128.94571 * 180.02562 * 16 14 5 18 18 C 1.31796 * 114.88085 * 179.97438 * 17 16 14 19 19 S 1.75284 * 111.34919 * 359.97438 * 18 17 16 20 20 C 1.39403 * 119.15192 * 0.02562 * 16 14 5 21 21 H 1.08004 * 120.06190 * 359.90241 * 4 3 2 22 22 H 0.96996 * 120.00447 * 179.97438 * 9 8 6 23 23 H 1.40999 * 99.99897 * 269.97531 * 15 14 5 24 24 H 1.07994 * 122.55758 * 359.97438 * 17 16 14 25 25 H 1.08004 * 124.32640 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2533 0.2520 -1.1755 5 6 4.6584 0.2601 -1.1788 6 6 5.3600 0.5203 -2.3737 7 1 6.3570 0.9338 -2.3354 8 6 4.7656 0.2430 -3.6073 9 7 3.7254 -0.5514 -3.6696 10 14 5.4537 1.0050 -5.1680 11 1 6.6219 1.8569 -4.8294 12 1 5.8795 -0.0714 -6.0982 13 1 4.4069 1.8346 -5.8169 14 6 5.3668 0.0068 0.0160 15 16 7.1288 0.0179 0.0109 16 6 4.6661 -0.2552 1.2197 17 6 5.1974 -0.5367 2.5444 18 6 4.2869 -0.7407 3.4752 19 16 2.6657 -0.6077 2.8221 20 6 3.2721 -0.2597 1.2067 21 1 2.7091 0.4451 -2.0883 22 1 3.3125 -0.7436 -4.5260 23 1 7.3812 -1.3382 -0.2816 24 1 6.2570 -0.5756 2.7494 25 1 4.5110 -0.9609 4.5086 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396220800.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:17 Heat of formation + Delta-G solvation = 51.757332 kcal Electronic energy + Delta-G solvation = -14107.354907 eV Core-core repulsion = 11688.669582 eV Total energy + Delta-G solvation = -2418.685325 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.07470 -37.67751 -36.82430 -34.74652 -32.24871 -30.19079 -27.54884 -24.71748 -24.15153 -21.64830 -19.94317 -18.74304 -18.53850 -17.33658 -16.68843 -16.38860 -15.81977 -15.23591 -15.09780 -14.80858 -14.28229 -14.06783 -13.87415 -13.72512 -13.26148 -12.94247 -12.71666 -12.67056 -12.59750 -11.88620 -11.73749 -11.66910 -11.27144 -11.08023 -10.08760 -9.33475 -8.95381 -8.59859 -8.53148 -6.51157 -0.29506 0.30351 0.85396 1.18186 1.24675 1.36995 1.45210 1.56302 1.60910 1.65079 1.96337 2.18248 2.25308 2.60052 2.98823 3.41588 3.99479 4.39582 4.59720 4.81847 4.96684 5.03792 5.15357 5.24152 5.32611 5.54153 5.73197 5.90009 6.32163 6.40356 6.59389 6.67638 8.07120 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.020725 B = 0.008507 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.673092 B = 3290.529948 C = 4552.663193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.279 3.721 3 C 0.006 3.994 4 C -0.063 4.063 5 C 0.111 3.889 6 C -0.433 4.433 7 H 0.112 0.888 8 C 0.037 3.963 9 N -0.805 5.805 10 Si 0.985 3.015 11 H -0.247 1.247 12 H -0.267 1.267 13 H -0.264 1.264 14 C -0.221 4.221 15 S -0.136 6.136 16 C 0.003 3.997 17 C -0.131 4.131 18 C -0.170 4.170 19 S 0.032 5.968 20 C -0.227 4.227 21 H 0.131 0.869 22 H 0.299 0.701 23 H 0.066 0.934 24 H 0.163 0.837 25 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.700 0.428 4.467 6.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.035 4.035 3 C -0.002 4.002 4 C -0.088 4.088 5 C 0.104 3.896 6 C -0.460 4.460 7 H 0.130 0.870 8 C -0.182 4.182 9 N -0.429 5.429 10 Si 0.805 3.195 11 H -0.170 1.170 12 H -0.192 1.192 13 H -0.189 1.189 14 C -0.339 4.339 15 S 0.021 5.979 16 C -0.007 4.007 17 C -0.161 4.161 18 C -0.304 4.304 19 S 0.291 5.709 20 C -0.345 4.345 21 H 0.148 0.852 22 H 0.110 0.890 23 H 0.031 0.969 24 H 0.181 0.819 25 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.306 0.381 5.039 5.555 hybrid contribution 0.701 -0.736 -1.665 1.951 sum 3.007 -0.355 3.374 4.534 Atomic orbital electron populations 1.81063 1.12339 1.11037 1.09193 1.26071 0.92982 0.92320 0.92130 1.15439 0.82792 1.08173 0.93805 1.21537 0.94864 0.97804 0.94629 1.17723 0.90923 0.88031 0.92874 1.20262 1.03285 1.32995 0.89481 0.86999 1.26962 0.93904 0.92540 1.04761 1.69874 1.18236 1.24293 1.30476 0.85068 0.79836 0.79083 0.75559 1.17032 1.19191 1.18896 1.20967 0.93837 1.24084 0.94969 1.85689 1.02687 1.15444 1.94091 1.19278 0.90571 0.97017 0.93844 1.21186 1.01755 1.03380 0.89828 1.25254 0.93845 1.06892 1.04368 1.83678 1.09527 1.77769 0.99881 1.21961 0.96039 1.20165 0.96344 0.85162 0.88983 0.96876 0.81920 0.78246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -19.95 18.54 19.01 0.35 -19.60 15 2 C 0.28 12.02 15.02 88.33 1.33 13.35 15 3 C 0.01 0.25 5.77 -21.04 -0.12 0.13 15 4 C -0.06 -2.92 8.31 22.86 0.19 -2.73 15 5 C 0.11 5.20 5.56 -21.32 -0.12 5.08 15 6 C -0.43 -19.54 8.41 23.30 0.20 -19.35 15 7 H 0.11 4.90 6.96 -2.91 -0.02 4.88 15 8 C 0.04 1.58 5.13 85.17 0.44 2.01 15 9 N -0.81 -36.06 10.99 21.79 0.24 -35.82 15 10 Si 0.98 32.53 29.59 68.60 2.03 34.56 15 11 H -0.25 -7.96 7.11 99.48 0.71 -7.25 15 12 H -0.27 -8.63 7.11 99.48 0.71 -7.92 15 13 H -0.26 -8.54 7.11 99.48 0.71 -7.83 15 14 C -0.22 -9.63 6.26 23.86 0.15 -9.48 15 15 S -0.14 -5.14 23.73 -56.49 -1.34 -6.48 15 16 C 0.00 0.14 5.99 -20.27 -0.12 0.02 15 17 C -0.13 -4.25 9.94 23.37 0.23 -4.02 15 18 C -0.17 -4.82 11.02 67.06 0.74 -4.08 15 19 S 0.03 1.07 22.92 -56.49 -1.29 -0.22 15 20 C -0.23 -9.44 6.36 23.51 0.15 -9.29 15 21 H 0.13 6.17 6.20 -2.91 -0.02 6.15 15 22 H 0.30 12.07 8.30 -92.71 -0.77 11.30 15 23 H 0.07 2.46 9.55 73.80 0.70 3.16 15 24 H 0.16 4.58 7.91 -2.91 -0.02 4.56 15 25 H 0.20 3.85 8.06 -2.91 -0.02 3.83 15 Total: -1.00 -50.07 261.82 5.02 -45.05 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.97 Total: 10.87 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 3.06 Total: -28.36 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.59 Total: -55.42 kcal Atomic # 14 Polarization: 32.53 SS G_CDS: 2.03 Total: 34.56 kcal Atomic # 16 Polarization: -4.07 SS G_CDS: -2.64 Total: -6.70 kcal Total: -50.07 5.02 -45.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220800.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.810 kcal (2) G-P(sol) polarization free energy of solvation -50.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds