Wall clock time and date at job start Mon Mar 30 2020 07:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.42389 * 120.18493 * 41.60041 * 3 2 1 5 5 C 1.40303 * 128.70613 * 359.97438 * 4 3 2 6 6 C 1.33309 * 115.66598 * 180.02562 * 5 4 3 7 7 S 1.76196 * 124.62343 * 180.02562 * 6 5 4 8 8 S 1.75459 * 110.75507 * 0.02562 * 6 5 4 9 9 C 1.40285 * 118.69379 * 180.02562 * 4 3 2 10 10 C 1.40198 * 120.42912 * 359.97438 * 9 4 3 11 11 C 1.35880 * 121.27511 * 0.02562 * 10 9 4 12 12 C 1.40981 * 120.26957 * 0.25015 * 11 10 9 13 13 C 1.40548 * 120.14644 * 179.74765 * 12 11 10 14 14 H 1.07993 * 119.99818 * 154.06011 * 13 12 11 15 15 C 1.40227 * 119.99927 * 334.06533 * 13 12 11 16 16 N 1.30679 * 119.99907 * 342.95336 * 15 13 12 17 17 Si 1.86798 * 119.99635 * 162.95959 * 15 13 12 18 18 H 1.48503 * 109.47553 * 89.99556 * 17 15 13 19 19 H 1.48499 * 109.47058 * 209.99734 * 17 15 13 20 20 H 1.48503 * 109.47164 * 329.99302 * 17 15 13 21 21 H 1.07996 * 122.16712 * 0.02562 * 5 4 3 22 22 H 1.41004 * 100.00076 * 89.99964 * 7 6 5 23 23 H 1.08005 * 119.36625 * 180.02562 * 10 9 4 24 24 H 1.08004 * 119.86675 * 179.97438 * 11 10 9 25 25 H 0.97010 * 119.99384 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2843 -0.9194 -0.8172 5 6 2.7795 -1.8988 -1.6858 6 6 3.6928 -2.6250 -2.3305 7 16 3.3225 -3.9132 -3.4741 8 16 5.3139 -2.1232 -1.8848 9 6 4.6867 -0.8919 -0.7925 10 6 5.3646 0.0259 0.0221 11 6 4.6892 0.9075 0.8050 12 6 3.2795 0.9122 0.8169 13 6 2.5835 1.8216 1.6317 14 1 1.5838 2.1305 1.3644 15 6 3.1873 2.3279 2.7916 16 7 4.2314 1.7284 3.2997 17 14 2.4989 3.8592 3.6105 18 1 1.4760 3.4672 4.6132 19 1 3.5974 4.5957 4.2860 20 1 1.8760 4.7324 2.5834 21 1 1.7196 -2.0542 -1.8233 22 1 3.2711 -3.1704 -4.6715 23 1 6.4447 0.0324 0.0274 24 1 5.2346 1.6044 1.4242 25 1 4.6488 2.0786 4.1024 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396221389.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:05 Heat of formation + Delta-G solvation = 57.044422 kcal Electronic energy + Delta-G solvation = -13955.629505 eV Core-core repulsion = 11537.173446 eV Total energy + Delta-G solvation = -2418.456059 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.72884 -35.54804 -35.13473 -33.33823 -30.52478 -28.75228 -26.01389 -23.23222 -22.39088 -20.24320 -18.65707 -17.49813 -16.91085 -15.65985 -15.53253 -15.01780 -14.12944 -13.91062 -13.52704 -13.21145 -12.81885 -12.22835 -12.05151 -11.85688 -11.79621 -11.49773 -11.42634 -11.06119 -10.96854 -10.60716 -10.32305 -10.01903 -9.94580 -9.54800 -8.66717 -8.03258 -7.75711 -7.39486 -7.04952 -4.89498 0.95751 1.71031 2.11472 2.23046 2.58174 2.71601 2.83178 2.84411 2.91562 3.15537 3.59242 3.89091 3.94418 4.33624 5.22107 5.31500 5.69843 5.79220 6.09600 6.12740 6.43106 6.58518 6.71194 6.97481 7.02713 7.18214 7.42467 7.62051 7.96705 8.24568 8.30705 8.78358 9.58766 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.033720 B = 0.005949 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.178099 B = 4705.698074 C = 5451.490142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.301 3.699 3 C -0.167 4.167 4 C -0.004 4.004 5 C -0.053 4.053 6 C -0.206 4.206 7 S -0.094 6.094 8 S 0.075 5.925 9 C -0.198 4.198 10 C -0.074 4.074 11 C -0.092 4.092 12 C 0.149 3.851 13 C -0.424 4.424 14 H 0.090 0.910 15 C 0.076 3.924 16 N -0.763 5.763 17 Si 0.917 3.083 18 H -0.263 1.263 19 H -0.269 1.269 20 H -0.255 1.255 21 H 0.136 0.864 22 H 0.090 0.910 23 H 0.106 0.894 24 H 0.137 0.863 25 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.778 -1.843 -4.409 6.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.009 4.009 3 C -0.177 4.177 4 C -0.015 4.015 5 C -0.090 4.090 6 C -0.433 4.433 7 S 0.061 5.939 8 S 0.338 5.662 9 C -0.316 4.316 10 C -0.097 4.097 11 C -0.114 4.114 12 C 0.142 3.858 13 C -0.451 4.451 14 H 0.108 0.892 15 C -0.148 4.148 16 N -0.385 5.385 17 Si 0.740 3.260 18 H -0.188 1.188 19 H -0.194 1.194 20 H -0.178 1.178 21 H 0.153 0.847 22 H 0.054 0.946 23 H 0.124 0.876 24 H 0.154 0.846 25 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.478 -3.220 -5.100 7.512 hybrid contribution -0.943 2.302 0.809 2.616 sum 3.535 -0.918 -4.291 5.635 Atomic orbital electron populations 1.81027 1.12558 1.12070 1.12972 1.25599 0.92539 0.91475 0.91244 1.15599 0.83223 1.05751 1.13158 1.17592 0.91688 0.95476 0.96707 1.20466 0.99863 0.93864 0.94789 1.24511 0.99316 1.08402 1.11080 1.86553 1.92734 1.10654 1.04006 1.83667 1.06106 1.33121 1.43311 1.22226 0.95385 1.05462 1.08512 1.19924 0.98152 0.95253 0.96358 1.21201 0.94058 0.98763 0.97351 1.17258 0.91614 0.88243 0.88664 1.19789 1.02035 1.19059 1.04260 0.89198 1.26152 0.93899 0.97866 0.96843 1.69688 1.16516 1.34884 1.17415 0.86113 0.79808 0.80254 0.79842 1.18776 1.19371 1.17795 0.84660 0.94599 0.87577 0.84585 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.11 18.54 41.84 0.78 -11.34 15 2 C 0.30 7.03 13.58 -22.47 -0.31 6.72 15 3 C -0.17 -3.81 5.88 -105.10 -0.62 -4.43 15 4 C 0.00 -0.08 5.85 -106.75 -0.62 -0.71 15 5 C -0.05 -1.02 9.60 -40.53 -0.39 -1.40 15 6 C -0.21 -3.58 6.68 29.01 0.19 -3.39 15 7 S -0.09 -1.36 26.17 -107.50 -2.81 -4.17 15 8 S 0.07 1.28 23.28 -107.50 -2.50 -1.22 15 9 C -0.20 -3.96 6.51 -38.08 -0.25 -4.21 15 10 C -0.07 -1.45 9.96 -39.69 -0.40 -1.85 15 11 C -0.09 -1.96 8.59 -39.39 -0.34 -2.30 15 12 C 0.15 3.43 5.57 -106.71 -0.59 2.84 15 13 C -0.42 -9.85 8.45 -37.96 -0.32 -10.17 15 14 H 0.09 2.13 7.26 -52.49 -0.38 1.75 15 15 C 0.08 1.62 5.14 -17.30 -0.09 1.53 15 16 N -0.76 -16.36 10.98 55.56 0.61 -15.75 15 17 Si 0.92 16.28 29.59 -169.99 -5.03 11.25 15 18 H -0.26 -4.75 7.11 56.52 0.40 -4.35 15 19 H -0.27 -4.56 7.11 56.52 0.40 -4.15 15 20 H -0.25 -4.58 7.11 56.52 0.40 -4.18 15 21 H 0.14 2.49 7.93 -52.49 -0.42 2.07 15 22 H 0.09 1.14 9.55 96.90 0.93 2.07 15 23 H 0.11 1.79 8.06 -52.48 -0.42 1.37 15 24 H 0.14 2.85 6.20 -52.48 -0.33 2.53 15 25 H 0.29 5.62 8.29 -40.82 -0.34 5.28 15 LS Contribution 262.96 15.07 3.96 3.96 Total: -1.00 -23.76 262.96 -8.48 -32.24 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: 0.25 Total: 2.38 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -3.73 Total: -17.36 kcal Atomic # 7 Polarization: -28.48 SS G_CDS: 1.39 Total: -27.09 kcal Atomic # 14 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.25 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -5.32 Total: -5.39 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -23.76 -8.48 -32.24 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396221389.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.280 kcal (2) G-P(sol) polarization free energy of solvation -23.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds