Wall clock time and date at job start Mon Mar 30 2020 07:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.42389 * 120.18493 * 41.60041 * 3 2 1 5 5 C 1.40303 * 128.70613 * 359.97438 * 4 3 2 6 6 C 1.33309 * 115.66598 * 180.02562 * 5 4 3 7 7 S 1.76196 * 124.62343 * 180.02562 * 6 5 4 8 8 S 1.75459 * 110.75507 * 0.02562 * 6 5 4 9 9 C 1.40285 * 118.69379 * 180.02562 * 4 3 2 10 10 C 1.40198 * 120.42912 * 359.97438 * 9 4 3 11 11 C 1.35880 * 121.27511 * 0.02562 * 10 9 4 12 12 C 1.40981 * 120.26957 * 0.25015 * 11 10 9 13 13 C 1.40548 * 120.14644 * 179.74765 * 12 11 10 14 14 H 1.07993 * 119.99818 * 154.06011 * 13 12 11 15 15 C 1.40227 * 119.99927 * 334.06533 * 13 12 11 16 16 N 1.30679 * 119.99907 * 342.95336 * 15 13 12 17 17 Si 1.86798 * 119.99635 * 162.95959 * 15 13 12 18 18 H 1.48503 * 109.47553 * 89.99556 * 17 15 13 19 19 H 1.48499 * 109.47058 * 209.99734 * 17 15 13 20 20 H 1.48503 * 109.47164 * 329.99302 * 17 15 13 21 21 H 1.07996 * 122.16712 * 0.02562 * 5 4 3 22 22 H 1.41004 * 100.00076 * 89.99964 * 7 6 5 23 23 H 1.08005 * 119.36625 * 180.02562 * 10 9 4 24 24 H 1.08004 * 119.86675 * 179.97438 * 11 10 9 25 25 H 0.97010 * 119.99384 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2843 -0.9194 -0.8172 5 6 2.7795 -1.8988 -1.6858 6 6 3.6928 -2.6250 -2.3305 7 16 3.3225 -3.9132 -3.4741 8 16 5.3139 -2.1232 -1.8848 9 6 4.6867 -0.8919 -0.7925 10 6 5.3646 0.0259 0.0221 11 6 4.6892 0.9075 0.8050 12 6 3.2795 0.9122 0.8169 13 6 2.5835 1.8216 1.6317 14 1 1.5838 2.1305 1.3644 15 6 3.1873 2.3279 2.7916 16 7 4.2314 1.7284 3.2997 17 14 2.4989 3.8592 3.6105 18 1 1.4760 3.4672 4.6132 19 1 3.5974 4.5957 4.2860 20 1 1.8760 4.7324 2.5834 21 1 1.7196 -2.0542 -1.8233 22 1 3.2711 -3.1704 -4.6715 23 1 6.4447 0.0324 0.0274 24 1 5.2346 1.6044 1.4242 25 1 4.6488 2.0786 4.1024 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396221389.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:04 Heat of formation + Delta-G solvation = 47.107455 kcal Electronic energy + Delta-G solvation = -13956.060405 eV Core-core repulsion = 11537.173446 eV Total energy + Delta-G solvation = -2418.886959 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.31807 -37.17505 -36.89967 -34.91934 -32.17632 -30.32947 -27.66105 -24.75627 -24.01960 -21.79652 -20.20504 -19.10707 -18.31725 -17.23603 -16.96014 -16.53511 -15.67285 -15.41001 -15.06189 -14.81569 -14.32180 -13.89312 -13.77943 -13.54160 -13.35854 -13.11280 -12.92712 -12.59695 -12.38895 -12.04607 -11.89911 -11.51758 -11.49607 -11.09109 -10.24131 -9.32653 -9.19880 -8.98658 -8.56059 -6.60849 -0.52866 0.37287 0.50108 0.85359 1.14008 1.26361 1.38014 1.45170 1.52045 1.77859 2.07910 2.12802 2.25995 2.61182 3.51582 3.61936 4.18171 4.27099 4.57385 4.60917 4.84752 4.98656 5.13840 5.34091 5.41742 5.57649 5.76309 5.99157 6.26973 6.56449 6.62587 6.97760 8.01203 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.033720 B = 0.005949 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.178099 B = 4705.698074 C = 5451.490142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C 0.305 3.695 3 C -0.198 4.198 4 C -0.013 4.013 5 C -0.079 4.079 6 C -0.200 4.200 7 S -0.077 6.077 8 S 0.133 5.867 9 C -0.219 4.219 10 C -0.064 4.064 11 C -0.109 4.109 12 C 0.133 3.867 13 C -0.454 4.454 14 H 0.073 0.927 15 C 0.049 3.951 16 N -0.779 5.779 17 Si 0.978 3.022 18 H -0.267 1.267 19 H -0.249 1.249 20 H -0.262 1.262 21 H 0.135 0.865 22 H 0.114 0.886 23 H 0.137 0.863 24 H 0.136 0.864 25 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.335 -2.371 -5.055 8.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.211 5.211 2 C -0.003 4.003 3 C -0.208 4.208 4 C -0.024 4.024 5 C -0.115 4.115 6 C -0.428 4.428 7 S 0.076 5.924 8 S 0.397 5.603 9 C -0.336 4.336 10 C -0.086 4.086 11 C -0.130 4.130 12 C 0.127 3.873 13 C -0.481 4.481 14 H 0.091 0.909 15 C -0.174 4.174 16 N -0.401 5.401 17 Si 0.798 3.202 18 H -0.192 1.192 19 H -0.172 1.172 20 H -0.185 1.185 21 H 0.152 0.848 22 H 0.079 0.921 23 H 0.154 0.846 24 H 0.154 0.846 25 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.060 -3.761 -5.752 9.162 hybrid contribution -1.329 2.309 0.861 2.800 sum 4.730 -1.451 -4.891 6.957 Atomic orbital electron populations 1.80986 1.13007 1.13089 1.14066 1.25859 0.92830 0.90896 0.90684 1.15806 0.82921 1.07213 1.14853 1.17785 0.92416 0.95501 0.96703 1.20421 1.00299 0.94787 0.96006 1.24884 0.99478 1.07891 1.10522 1.86532 1.92569 1.09188 1.04085 1.83444 1.04930 1.30751 1.41140 1.22595 0.95382 1.06444 1.09167 1.20216 0.99599 0.93920 0.94840 1.21188 0.93312 0.99933 0.98586 1.17540 0.92725 0.88277 0.88761 1.19881 1.01846 1.20624 1.05785 0.90911 1.26750 0.94118 0.99893 0.96590 1.69668 1.16857 1.35664 1.17941 0.85236 0.79488 0.76981 0.78536 1.19158 1.17217 1.18546 0.84764 0.92113 0.84551 0.84626 0.88231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -26.28 18.54 19.00 0.35 -25.93 15 2 C 0.31 14.84 13.58 88.33 1.20 16.04 15 3 C -0.20 -9.30 5.88 -20.18 -0.12 -9.42 15 4 C -0.01 -0.55 5.85 -21.25 -0.12 -0.67 15 5 C -0.08 -2.95 9.60 21.66 0.21 -2.74 15 6 C -0.20 -6.52 6.68 66.71 0.45 -6.08 15 7 S -0.08 -2.01 26.17 -56.49 -1.48 -3.49 15 8 S 0.13 4.19 23.28 -56.49 -1.32 2.88 15 9 C -0.22 -8.43 6.51 23.24 0.15 -8.28 15 10 C -0.06 -2.41 9.96 22.20 0.22 -2.19 15 11 C -0.11 -4.64 8.59 22.39 0.19 -4.45 15 12 C 0.13 6.33 5.57 -21.22 -0.12 6.22 15 13 C -0.45 -21.83 8.45 23.32 0.20 -21.63 15 14 H 0.07 3.63 7.26 -2.91 -0.02 3.61 15 15 C 0.05 2.09 5.14 85.35 0.44 2.53 15 16 N -0.78 -33.29 10.98 21.87 0.24 -33.05 15 17 Si 0.98 33.25 29.59 68.60 2.03 35.28 15 18 H -0.27 -9.18 7.11 99.48 0.71 -8.47 15 19 H -0.25 -7.60 7.11 99.48 0.71 -6.89 15 20 H -0.26 -9.11 7.11 99.48 0.71 -8.40 15 21 H 0.13 4.97 7.93 -2.91 -0.02 4.95 15 22 H 0.11 2.48 9.55 73.80 0.70 3.18 15 23 H 0.14 4.24 8.06 -2.91 -0.02 4.22 15 24 H 0.14 5.70 6.20 -2.91 -0.02 5.69 15 25 H 0.31 11.43 8.29 -92.70 -0.77 10.67 15 Total: -1.00 -50.92 262.96 4.49 -46.43 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 1.97 Total: 8.55 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 2.69 Total: -30.68 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: 0.59 Total: -58.97 kcal Atomic # 14 Polarization: 33.25 SS G_CDS: 2.03 Total: 35.28 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -2.79 Total: -0.61 kcal Total: -50.92 4.49 -46.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396221389.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.538 kcal (2) G-P(sol) polarization free energy of solvation -50.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds