Wall clock time and date at job start Mon Mar 30 2020 07:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39593 * 119.73038 * 312.16344 * 3 2 1 5 5 C 1.36194 * 120.71931 * 180.02562 * 4 3 2 6 6 C 1.40761 * 120.21928 * 359.97438 * 5 4 3 7 7 C 1.40495 * 119.95750 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99464 * 205.27987 * 7 6 5 9 9 C 1.40123 * 120.00465 * 25.27747 * 7 6 5 10 10 N 1.30738 * 119.99882 * 17.98066 * 9 7 6 11 11 Si 1.86796 * 120.00276 * 197.97901 * 9 7 6 12 12 H 1.48511 * 109.47179 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47264 * 119.99778 * 11 9 7 14 14 H 1.48500 * 109.47361 * 240.00382 * 11 9 7 15 15 C 1.42281 * 120.07823 * 359.97438 * 6 5 4 16 16 S 1.75887 * 130.48469 * 180.34147 * 15 6 5 17 17 C 1.75309 * 92.22770 * 180.02562 * 16 15 6 18 18 C 1.32644 * 111.22265 * 359.65068 * 17 16 15 19 19 S 1.76201 * 122.64354 * 180.28750 * 18 17 16 20 20 C 1.39261 * 119.64422 * 0.02562 * 15 6 5 21 21 H 1.08002 * 119.64387 * 0.04602 * 4 3 2 22 22 H 1.08007 * 119.88869 * 179.97438 * 5 4 3 23 23 H 0.96993 * 120.00009 * 179.97438 * 10 9 7 24 24 H 1.07995 * 124.38637 * 179.91298 * 17 16 15 25 25 H 1.34503 * 102.99864 * 89.97200 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2606 -0.8127 0.8985 5 6 4.6224 -0.8275 0.9163 6 6 5.3514 -0.0191 0.0239 7 6 6.7560 -0.0390 0.0466 8 1 7.3139 0.8171 -0.3033 9 6 7.4331 -1.1694 0.5233 10 7 6.8095 -2.3149 0.6143 11 14 9.2267 -1.0398 1.0286 12 1 9.6970 0.3551 0.8318 13 1 9.3660 -1.4112 2.4596 14 1 10.0432 -1.9598 0.1966 15 6 4.6674 0.8175 -0.9018 16 16 5.2916 1.9153 -2.1260 17 6 3.6780 2.3792 -2.6306 18 6 2.7527 1.7410 -1.9264 19 16 1.0266 1.9765 -2.1907 20 6 3.2750 0.8316 -0.9189 21 1 2.7107 -1.4374 1.5869 22 1 5.1447 -1.4617 1.6175 23 1 7.2783 -3.0974 0.9439 24 1 3.4650 3.0891 -3.4160 25 1 0.7322 1.0451 -3.1152 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396222145.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:49 Heat of formation + Delta-G solvation = 60.250028 kcal Electronic energy + Delta-G solvation = -14109.820660 eV Core-core repulsion = 11691.503606 eV Total energy + Delta-G solvation = -2418.317054 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -38.46626 -35.41928 -35.10435 -33.37567 -30.48627 -28.51408 -26.28370 -23.00763 -22.10733 -20.28532 -18.47550 -17.83169 -16.77334 -15.81667 -15.08152 -14.92013 -14.46468 -13.62620 -13.61326 -13.13698 -12.62061 -12.20517 -12.07413 -11.87601 -11.74893 -11.48474 -11.32121 -11.07686 -10.75587 -10.55359 -10.39394 -9.95061 -9.78052 -9.53398 -8.50378 -7.70085 -7.58339 -7.35908 -7.08750 -4.84639 1.24331 1.74428 2.20995 2.44338 2.71406 2.78116 2.83131 2.88324 3.00748 3.46441 3.55612 3.84369 3.93968 4.52490 5.15131 5.21853 5.33419 5.91639 6.06583 6.23040 6.46362 6.62282 6.69964 6.96426 7.13154 7.40015 7.55630 7.67939 8.06272 8.22876 8.33501 8.75566 9.57952 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.027603 B = 0.007303 C = 0.005880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.136785 B = 3833.321907 C = 4760.723195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.289 3.711 3 C -0.165 4.165 4 C -0.025 4.025 5 C -0.179 4.179 6 C 0.165 3.835 7 C -0.422 4.422 8 H 0.091 0.909 9 C 0.074 3.926 10 N -0.752 5.752 11 Si 0.917 3.083 12 H -0.254 1.254 13 H -0.265 1.265 14 H -0.268 1.268 15 C -0.226 4.226 16 S 0.105 5.895 17 C -0.149 4.149 18 C -0.118 4.118 19 S -0.111 6.111 20 C 0.028 3.972 21 H 0.105 0.895 22 H 0.131 0.869 23 H 0.293 0.707 24 H 0.165 0.835 25 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.282 3.431 -2.318 5.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.022 4.022 3 C -0.174 4.174 4 C -0.046 4.046 5 C -0.202 4.202 6 C 0.158 3.842 7 C -0.449 4.449 8 H 0.109 0.891 9 C -0.150 4.150 10 N -0.374 5.374 11 Si 0.739 3.261 12 H -0.177 1.177 13 H -0.190 1.190 14 H -0.193 1.193 15 C -0.342 4.342 16 S 0.369 5.631 17 C -0.287 4.287 18 C -0.246 4.246 19 S 0.044 5.956 20 C 0.016 3.984 21 H 0.123 0.877 22 H 0.149 0.851 23 H 0.104 0.896 24 H 0.182 0.818 25 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 2.132 3.911 -2.770 5.245 hybrid contribution 0.646 -1.375 -0.011 1.520 sum 2.778 2.536 -2.781 4.678 Atomic orbital electron populations 1.80985 1.12470 1.12005 1.11436 1.25656 0.92710 0.91852 0.92031 1.15123 0.83226 1.10957 1.08091 1.20214 0.94576 0.94779 0.95076 1.20734 0.91968 1.05284 1.02177 1.17075 0.92919 0.87448 0.86747 1.19825 0.91509 1.00651 1.32925 0.89091 1.26134 1.02153 0.94247 0.92469 1.69764 1.39359 1.00298 1.27932 0.86085 0.80072 0.80479 0.79454 1.17694 1.18972 1.19338 1.22400 0.94459 1.11223 1.06163 1.83629 1.04343 1.41200 1.33937 1.25674 0.97086 1.03016 1.02933 1.20866 0.95015 1.05599 1.03135 1.85743 1.05316 1.48259 1.56295 1.18528 0.91521 0.94393 0.93912 0.87739 0.85139 0.89569 0.81767 0.97156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -10.94 18.13 41.84 0.76 -10.18 15 2 C 0.29 6.33 12.91 -22.47 -0.29 6.04 15 3 C -0.17 -3.62 5.82 -105.77 -0.62 -4.24 15 4 C -0.03 -0.53 9.61 -39.81 -0.38 -0.91 15 5 C -0.18 -3.97 8.59 -39.36 -0.34 -4.31 15 6 C 0.16 3.76 5.59 -106.54 -0.60 3.16 15 7 C -0.42 -9.31 8.80 -38.02 -0.33 -9.64 15 8 H 0.09 1.92 7.74 -52.48 -0.41 1.52 15 9 C 0.07 1.54 5.11 -17.31 -0.09 1.45 15 10 N -0.75 -16.11 10.98 55.56 0.61 -15.50 15 11 Si 0.92 15.46 29.60 -169.99 -5.03 10.43 15 12 H -0.25 -4.28 7.11 56.52 0.40 -3.87 15 13 H -0.27 -4.42 7.11 56.52 0.40 -4.02 15 14 H -0.27 -4.51 7.11 56.52 0.40 -4.10 15 15 C -0.23 -4.91 6.36 -37.65 -0.24 -5.15 15 16 S 0.11 1.89 22.80 -107.50 -2.45 -0.56 15 17 C -0.15 -2.52 10.85 28.84 0.31 -2.21 15 18 C -0.12 -2.31 6.20 -38.62 -0.24 -2.55 15 19 S -0.11 -2.05 23.18 -107.50 -2.49 -4.54 15 20 C 0.03 0.60 6.00 -104.96 -0.63 -0.03 15 21 H 0.10 1.97 8.06 -52.49 -0.42 1.54 15 22 H 0.13 2.90 6.16 -52.48 -0.32 2.57 15 23 H 0.29 5.58 8.29 -40.82 -0.34 5.24 15 24 H 0.16 2.22 8.06 -52.49 -0.42 1.80 15 25 H 0.06 1.15 9.07 97.61 0.89 2.04 15 LS Contribution 259.22 15.07 3.91 3.91 Total: -1.00 -24.16 259.22 -7.96 -32.13 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 0.18 Total: 2.71 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -3.44 Total: -18.39 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 1.37 Total: -25.68 kcal Atomic # 14 Polarization: 15.46 SS G_CDS: -5.03 Total: 10.43 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -4.94 Total: -5.11 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -24.16 -7.96 -32.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396222145.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.377 kcal (2) G-P(sol) polarization free energy of solvation -24.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds