Wall clock time and date at job start Mon Mar 30 2020 07:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39593 * 119.73038 * 312.16344 * 3 2 1 5 5 C 1.36194 * 120.71931 * 180.02562 * 4 3 2 6 6 C 1.40761 * 120.21928 * 359.97438 * 5 4 3 7 7 C 1.40495 * 119.95750 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99464 * 205.27987 * 7 6 5 9 9 C 1.40123 * 120.00465 * 25.27747 * 7 6 5 10 10 N 1.30738 * 119.99882 * 17.98066 * 9 7 6 11 11 Si 1.86796 * 120.00276 * 197.97901 * 9 7 6 12 12 H 1.48511 * 109.47179 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47264 * 119.99778 * 11 9 7 14 14 H 1.48500 * 109.47361 * 240.00382 * 11 9 7 15 15 C 1.42281 * 120.07823 * 359.97438 * 6 5 4 16 16 S 1.75887 * 130.48469 * 180.34147 * 15 6 5 17 17 C 1.75309 * 92.22770 * 180.02562 * 16 15 6 18 18 C 1.32644 * 111.22265 * 359.65068 * 17 16 15 19 19 S 1.76201 * 122.64354 * 180.28750 * 18 17 16 20 20 C 1.39261 * 119.64422 * 0.02562 * 15 6 5 21 21 H 1.08002 * 119.64387 * 0.04602 * 4 3 2 22 22 H 1.08007 * 119.88869 * 179.97438 * 5 4 3 23 23 H 0.96993 * 120.00009 * 179.97438 * 10 9 7 24 24 H 1.07995 * 124.38637 * 179.91298 * 17 16 15 25 25 H 1.34503 * 102.99864 * 89.97200 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2606 -0.8127 0.8985 5 6 4.6224 -0.8275 0.9163 6 6 5.3514 -0.0191 0.0239 7 6 6.7560 -0.0390 0.0466 8 1 7.3139 0.8171 -0.3033 9 6 7.4331 -1.1694 0.5233 10 7 6.8095 -2.3149 0.6143 11 14 9.2267 -1.0398 1.0286 12 1 9.6970 0.3551 0.8318 13 1 9.3660 -1.4112 2.4596 14 1 10.0432 -1.9598 0.1966 15 6 4.6674 0.8175 -0.9018 16 16 5.2916 1.9153 -2.1260 17 6 3.6780 2.3792 -2.6306 18 6 2.7527 1.7410 -1.9264 19 16 1.0266 1.9765 -2.1907 20 6 3.2750 0.8316 -0.9189 21 1 2.7107 -1.4374 1.5869 22 1 5.1447 -1.4617 1.6175 23 1 7.2783 -3.0974 0.9439 24 1 3.4650 3.0891 -3.4160 25 1 0.7322 1.0451 -3.1152 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396222145.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:49 Heat of formation + Delta-G solvation = 49.855419 kcal Electronic energy + Delta-G solvation = -14110.271404 eV Core-core repulsion = 11691.503606 eV Total energy + Delta-G solvation = -2418.767798 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.06661 -37.10779 -36.68666 -34.96673 -32.13900 -30.08297 -27.93276 -24.53650 -23.73818 -21.84246 -20.05926 -19.44606 -18.24342 -17.39497 -16.56812 -16.43706 -16.01115 -15.18347 -15.14814 -14.73670 -14.19479 -13.84119 -13.67633 -13.46084 -13.32876 -12.90631 -12.85201 -12.65223 -12.24773 -12.05140 -11.93060 -11.47376 -11.31240 -11.11198 -10.08162 -9.30357 -9.03379 -8.92758 -8.63344 -6.51692 -0.24875 0.29022 0.60607 0.93606 1.15413 1.39607 1.45329 1.52601 1.59098 1.99493 2.14256 2.20763 2.24679 2.85879 3.53495 3.61926 3.77606 4.40785 4.60775 4.68931 4.85788 5.03355 5.10963 5.35233 5.46803 5.74759 5.90429 6.00988 6.40334 6.57927 6.67554 7.03730 8.04154 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.027603 B = 0.007303 C = 0.005880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.136785 B = 3833.321907 C = 4760.723195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C 0.296 3.704 3 C -0.187 4.187 4 C -0.023 4.023 5 C -0.198 4.198 6 C 0.144 3.856 7 C -0.439 4.439 8 H 0.095 0.905 9 C 0.042 3.958 10 N -0.777 5.777 11 Si 0.984 3.016 12 H -0.252 1.252 13 H -0.261 1.261 14 H -0.264 1.264 15 C -0.258 4.258 16 S 0.144 5.856 17 C -0.121 4.121 18 C -0.151 4.151 19 S -0.105 6.105 20 C 0.017 3.983 21 H 0.120 0.880 22 H 0.124 0.876 23 H 0.303 0.697 24 H 0.205 0.795 25 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.519 4.245 -3.036 6.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 C -0.015 4.015 3 C -0.196 4.196 4 C -0.045 4.045 5 C -0.221 4.221 6 C 0.137 3.863 7 C -0.465 4.465 8 H 0.113 0.887 9 C -0.180 4.180 10 N -0.399 5.399 11 Si 0.804 3.196 12 H -0.175 1.175 13 H -0.185 1.185 14 H -0.188 1.188 15 C -0.375 4.375 16 S 0.408 5.592 17 C -0.260 4.260 18 C -0.278 4.278 19 S 0.050 5.950 20 C 0.005 3.995 21 H 0.138 0.862 22 H 0.142 0.858 23 H 0.115 0.885 24 H 0.222 0.778 25 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 3.350 4.720 -3.488 6.758 hybrid contribution 0.308 -1.618 0.160 1.654 sum 3.658 3.103 -3.328 5.838 Atomic orbital electron populations 1.80975 1.12633 1.12621 1.12019 1.25667 0.92656 0.91479 0.91661 1.15277 0.83243 1.12017 1.09087 1.20365 0.94417 0.94609 0.95075 1.20726 0.92396 1.06122 1.02810 1.17391 0.93658 0.88009 0.87242 1.20091 0.91531 1.01347 1.33544 0.88667 1.26911 1.05892 0.93459 0.91775 1.69782 1.41178 1.01116 1.27823 0.85087 0.74998 0.80429 0.79129 1.17483 1.18489 1.18817 1.22711 0.94996 1.12360 1.07398 1.83415 1.04401 1.39442 1.31983 1.26146 0.95981 1.01679 1.02157 1.20915 0.96000 1.06831 1.04038 1.85677 1.04980 1.47911 1.56424 1.18860 0.91853 0.94532 0.94219 0.86162 0.85784 0.88540 0.77813 0.97089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.35 18.13 19.00 0.34 -22.01 15 2 C 0.30 12.98 12.91 88.33 1.14 14.12 15 3 C -0.19 -8.29 5.82 -20.61 -0.12 -8.41 15 4 C -0.02 -1.01 9.61 22.12 0.21 -0.80 15 5 C -0.20 -8.98 8.59 22.41 0.19 -8.79 15 6 C 0.14 6.61 5.59 -21.11 -0.12 6.49 15 7 C -0.44 -19.24 8.80 23.28 0.20 -19.04 15 8 H 0.10 3.96 7.74 -2.91 -0.02 3.94 15 9 C 0.04 1.71 5.11 85.31 0.44 2.15 15 10 N -0.78 -33.20 10.98 21.86 0.24 -32.96 15 11 Si 0.98 30.57 29.60 68.60 2.03 32.60 15 12 H -0.25 -7.68 7.11 99.48 0.71 -6.97 15 13 H -0.26 -7.86 7.11 99.48 0.71 -7.16 15 14 H -0.26 -7.95 7.11 99.48 0.71 -7.24 15 15 C -0.26 -11.16 6.36 23.52 0.15 -11.01 15 16 S 0.14 4.88 22.80 -56.49 -1.29 3.60 15 17 C -0.12 -3.78 10.85 66.65 0.72 -3.05 15 18 C -0.15 -5.66 6.20 22.96 0.14 -5.51 15 19 S -0.10 -3.73 23.18 -56.49 -1.31 -5.04 15 20 C 0.02 0.74 6.00 -20.08 -0.12 0.62 15 21 H 0.12 4.60 8.06 -2.91 -0.02 4.57 15 22 H 0.12 5.66 6.16 -2.91 -0.02 5.64 15 23 H 0.30 11.41 8.29 -92.71 -0.77 10.64 15 24 H 0.20 4.62 8.06 -2.91 -0.02 4.60 15 25 H 0.06 2.25 9.07 73.35 0.67 2.91 15 Total: -1.00 -50.91 259.22 4.79 -46.12 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 1.93 Total: 10.93 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 2.84 Total: -33.24 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.58 Total: -54.97 kcal Atomic # 14 Polarization: 30.57 SS G_CDS: 2.03 Total: 32.60 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.60 Total: -1.45 kcal Total: -50.91 4.79 -46.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396222145.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.975 kcal (2) G-P(sol) polarization free energy of solvation -50.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds