Wall clock time and date at job start Mon Mar 30 2020 07:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.35421 * 123.08731 * 239.45456 * 3 2 1 5 5 S 1.70000 * 112.07000 * 179.84837 * 4 3 2 6 6 C 1.75835 * 93.04829 * 0.35302 * 5 4 3 7 7 C 1.39169 * 130.20873 * 179.80098 * 6 5 4 8 8 C 1.40412 * 120.15843 * 180.02562 * 7 6 5 9 9 C 1.41081 * 120.12095 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00225 * 204.84843 * 9 8 7 11 11 C 1.39793 * 119.99712 * 24.84758 * 9 8 7 12 12 N 1.30931 * 120.00128 * 18.04734 * 11 9 8 13 13 Si 1.86799 * 119.99966 * 198.04898 * 11 9 8 14 14 H 1.48501 * 109.47035 * 59.99937 * 13 11 9 15 15 H 1.48504 * 109.47296 * 179.97438 * 13 11 9 16 16 H 1.48490 * 109.47261 * 299.99834 * 13 11 9 17 17 C 1.40977 * 119.76875 * 359.97438 * 8 7 6 18 18 C 1.36185 * 120.12989 * 359.97438 * 17 8 7 19 19 S 1.76200 * 119.69699 * 179.97438 * 18 17 8 20 20 C 1.39848 * 109.93832 * 359.80680 * 6 5 4 21 21 H 1.07995 * 123.95982 * 359.97438 * 4 3 2 22 22 H 1.08003 * 119.92225 * 0.02718 * 7 6 5 23 23 H 0.97001 * 120.00056 * 180.02562 * 12 11 9 24 24 H 1.07995 * 119.93616 * 180.02562 * 17 8 7 25 25 H 1.34499 * 102.99987 * 270.03968 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3070 0.5776 0.9772 5 16 4.9757 0.4097 0.6995 6 6 4.7324 -0.4678 -0.8047 7 6 5.6606 -0.9899 -1.7006 8 6 5.2266 -1.6624 -2.8542 9 6 6.1683 -2.1909 -3.7622 10 1 5.8966 -2.3391 -4.7968 11 6 7.4531 -2.5227 -3.3224 12 7 7.6862 -2.6845 -2.0442 13 14 8.8375 -2.7350 -4.5584 14 1 9.0309 -1.4676 -5.3077 15 1 10.0914 -3.0825 -3.8426 16 1 8.4911 -3.8232 -5.5076 17 6 3.8465 -1.8077 -3.1022 18 6 2.9371 -1.2982 -2.2258 19 16 1.2149 -1.4858 -2.5473 20 6 3.3644 -0.6145 -1.0553 21 1 2.8856 1.0832 1.8334 22 1 6.7174 -0.8776 -1.5080 23 1 8.5778 -2.9144 -1.7391 24 1 3.5096 -2.3248 -3.9885 25 1 0.9190 -0.3857 -3.2622 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396223253.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:28 Heat of formation + Delta-G solvation = 50.591166 kcal Electronic energy + Delta-G solvation = -14024.026011 eV Core-core repulsion = 11605.290117 eV Total energy + Delta-G solvation = -2418.735894 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.12521 -37.85008 -36.30570 -34.73274 -31.55850 -30.97562 -27.23594 -25.45250 -23.58606 -22.47228 -20.08912 -18.82417 -18.06002 -17.83115 -16.94425 -16.30450 -15.86133 -15.39874 -15.13624 -14.72412 -14.22130 -14.00298 -13.88347 -13.76614 -13.17693 -12.95516 -12.86553 -12.62338 -12.38879 -12.17202 -11.81023 -11.69421 -11.26010 -10.95167 -10.20949 -9.38330 -9.09980 -8.74434 -8.51501 -6.38346 -0.30299 0.43003 0.70590 0.75941 0.92132 1.18434 1.44034 1.50026 1.56348 1.79829 1.89668 2.20521 2.39338 2.71666 3.30532 3.45744 3.88305 4.43263 4.65602 4.79050 4.85216 5.01626 5.07985 5.24381 5.51128 5.62009 5.79083 5.95939 6.42695 6.63817 6.73957 6.75265 8.21467 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.025588 B = 0.007111 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.982937 B = 3936.550935 C = 4943.132345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.300 3.700 3 C -0.038 4.038 4 C -0.193 4.193 5 S 0.193 5.807 6 C -0.126 4.126 7 C -0.149 4.149 8 C 0.087 3.913 9 C -0.466 4.466 10 H 0.091 0.909 11 C 0.040 3.960 12 N -0.803 5.803 13 Si 0.982 3.018 14 H -0.259 1.259 15 H -0.268 1.268 16 H -0.260 1.260 17 C -0.135 4.135 18 C -0.059 4.059 19 S -0.149 6.149 20 C -0.149 4.149 21 H 0.203 0.797 22 H 0.121 0.879 23 H 0.296 0.704 24 H 0.124 0.876 25 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.587 4.013 2.460 4.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.016 4.016 3 C -0.057 4.057 4 C -0.333 4.333 5 S 0.460 5.540 6 C -0.243 4.243 7 C -0.175 4.175 8 C 0.079 3.921 9 C -0.494 4.494 10 H 0.109 0.891 11 C -0.179 4.179 12 N -0.427 5.427 13 Si 0.803 3.197 14 H -0.184 1.184 15 H -0.192 1.192 16 H -0.184 1.184 17 C -0.156 4.156 18 C -0.173 4.173 19 S 0.010 5.990 20 C -0.159 4.159 21 H 0.220 0.780 22 H 0.139 0.861 23 H 0.107 0.893 24 H 0.142 0.858 25 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 0.325 4.128 3.433 5.379 hybrid contribution 0.440 0.136 -1.699 1.760 sum 0.765 4.264 1.733 4.666 Atomic orbital electron populations 1.81070 1.12270 1.10253 1.09704 1.24972 0.91957 0.92520 0.92169 1.15878 0.84830 1.07162 0.97846 1.25245 0.99438 1.05318 1.03255 1.82440 1.00444 1.55102 1.16052 1.22602 0.95624 1.05091 1.00935 1.20725 0.97803 1.02461 0.96480 1.17714 0.91298 0.90237 0.92811 1.19856 0.96318 1.35974 0.97301 0.89140 1.26729 1.01808 0.91692 0.97626 1.69851 1.24812 1.31007 1.17070 0.85217 0.76151 0.79956 0.78379 1.18372 1.19199 1.18389 1.21383 0.92872 1.01691 0.99700 1.20394 0.93364 1.05615 0.97897 1.85634 1.07731 1.33433 1.72242 1.18497 0.91371 1.08698 0.97314 0.78042 0.86106 0.89285 0.85778 0.96396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -17.31 18.36 19.00 0.35 -16.96 15 2 C 0.30 10.97 13.09 88.33 1.16 12.12 15 3 C -0.04 -1.36 5.85 -20.72 -0.12 -1.48 15 4 C -0.19 -5.54 10.64 67.17 0.71 -4.83 15 5 S 0.19 5.91 22.98 -56.49 -1.30 4.61 15 6 C -0.13 -5.23 6.43 22.88 0.15 -5.08 15 7 C -0.15 -6.88 8.72 23.02 0.20 -6.68 15 8 C 0.09 4.16 5.56 -21.38 -0.12 4.04 15 9 C -0.47 -21.70 9.02 23.34 0.21 -21.49 15 10 H 0.09 3.99 7.91 -2.91 -0.02 3.96 15 11 C 0.04 1.73 5.12 85.20 0.44 2.17 15 12 N -0.80 -36.52 10.98 21.80 0.24 -36.28 15 13 Si 0.98 33.10 29.60 68.60 2.03 35.13 15 14 H -0.26 -8.62 7.11 99.48 0.71 -7.91 15 15 H -0.27 -8.61 7.11 99.48 0.71 -7.90 15 16 H -0.26 -8.58 7.11 99.48 0.71 -7.88 15 17 C -0.13 -6.03 9.39 22.46 0.21 -5.82 15 18 C -0.06 -2.53 6.12 22.76 0.14 -2.39 15 19 S -0.15 -5.76 23.08 -56.49 -1.30 -7.06 15 20 C -0.15 -6.23 6.04 -19.96 -0.12 -6.36 15 21 H 0.20 4.12 8.06 -2.91 -0.02 4.09 15 22 H 0.12 5.73 6.15 -2.91 -0.02 5.71 15 23 H 0.30 12.10 8.30 -92.71 -0.77 11.33 15 24 H 0.12 5.19 8.06 -2.91 -0.02 5.17 15 25 H 0.07 2.64 9.07 73.35 0.67 3.30 15 Total: -1.00 -51.27 259.83 4.80 -46.47 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 1.93 Total: 9.88 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 2.85 Total: -35.79 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.59 Total: -53.25 kcal Atomic # 14 Polarization: 33.10 SS G_CDS: 2.03 Total: 35.13 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -2.60 Total: -2.45 kcal Total: -51.27 4.80 -46.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396223253.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.064 kcal (2) G-P(sol) polarization free energy of solvation -51.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds