Wall clock time and date at job start Mon Mar 30 2020 07:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39052 * 119.96810 * 349.56610 * 3 2 1 5 5 C 1.38088 * 120.06195 * 180.02562 * 4 3 2 6 6 C 1.37971 * 120.33586 * 359.95401 * 5 4 3 7 7 C 1.39673 * 120.86258 * 359.97438 * 6 5 4 8 8 S 1.75905 * 129.60797 * 180.02562 * 7 6 5 9 9 C 1.75189 * 92.74065 * 179.80043 * 8 7 6 10 10 S 1.76194 * 124.62967 * 180.22200 * 9 8 7 11 11 C 1.38083 * 110.74480 * 0.32155 * 9 8 7 12 12 C 1.40682 * 123.25509 * 179.88937 * 11 9 8 13 13 H 1.07993 * 120.00492 * 221.25750 * 12 11 9 14 14 C 1.39479 * 120.00086 * 40.98670 * 12 11 9 15 15 N 1.31322 * 119.99658 * 20.78635 * 14 12 11 16 16 Si 1.86796 * 120.00248 * 200.78815 * 14 12 11 17 17 H 1.48498 * 109.47142 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47051 * 119.99786 * 16 14 12 19 19 H 1.48490 * 109.47133 * 239.99707 * 16 14 12 20 20 C 1.39301 * 119.72928 * 0.02626 * 7 6 5 21 21 H 1.08002 * 119.96826 * 359.97438 * 4 3 2 22 22 H 1.07996 * 119.83109 * 179.97438 * 5 4 3 23 23 H 1.08005 * 119.56614 * 180.02562 * 6 5 4 24 24 H 1.41003 * 100.00404 * 270.11308 * 10 9 8 25 25 H 0.97000 * 120.00049 * 180.92612 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2631 -1.1837 0.2182 5 6 4.6439 -1.1853 0.2191 6 6 5.3422 -0.0150 0.0032 7 6 4.6708 1.1892 -0.2201 8 16 5.3200 2.7968 -0.5175 9 6 3.7246 3.5071 -0.6560 10 16 3.4117 5.2104 -0.9806 11 6 2.7457 2.5504 -0.4739 12 6 1.3691 2.8351 -0.5281 13 1 0.6958 2.3840 0.1856 14 6 0.8745 3.7046 -1.5002 15 7 1.5710 3.9366 -2.5891 16 14 -0.7783 4.5390 -1.2531 17 1 -1.3581 4.1140 0.0463 18 1 -0.5939 6.0126 -1.2539 19 1 -1.6965 4.1545 -2.3549 20 6 3.2780 1.2129 -0.2251 21 1 2.7224 -2.1032 0.3878 22 1 5.1800 -2.1072 0.3893 23 1 6.4222 -0.0306 0.0062 24 1 3.3680 5.7071 0.3383 25 1 1.2333 4.5516 -3.2589 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396225111.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:57 Heat of formation + Delta-G solvation = 66.279577 kcal Electronic energy + Delta-G solvation = -14362.934730 eV Core-core repulsion = 11944.879137 eV Total energy + Delta-G solvation = -2418.055593 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = -0.84 seconds Orbital eigenvalues (eV) -38.98989 -35.69004 -35.07568 -32.50542 -30.74917 -28.64623 -26.10733 -23.09839 -22.69933 -20.02392 -18.83166 -17.01465 -16.02750 -15.68995 -15.12958 -14.68799 -14.48425 -14.00880 -13.55301 -13.05782 -12.58193 -12.28339 -12.19807 -11.91186 -11.75853 -11.73438 -11.23352 -10.97034 -10.77904 -10.28772 -10.11602 -9.81755 -9.58776 -9.17032 -8.69399 -7.55162 -7.03432 -6.85854 -6.36422 -4.58508 1.11011 1.56782 2.52401 2.79619 3.09018 3.12676 3.14862 3.34852 3.47807 3.51223 3.68157 3.93990 4.20466 4.46141 4.58435 4.95998 5.26233 5.38525 5.58280 5.86616 6.08332 6.37411 6.60363 6.72726 6.79175 6.99840 7.22405 7.49806 8.12573 8.20564 8.42114 8.62450 10.07512 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.011000 C = 0.007299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.216657 B = 2544.777825 C = 3835.198536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.275 3.725 3 C 0.010 3.990 4 C -0.093 4.093 5 C -0.120 4.120 6 C -0.076 4.076 7 C -0.116 4.116 8 S 0.024 5.976 9 C -0.337 4.337 10 S -0.048 6.048 11 C 0.140 3.860 12 C -0.434 4.434 13 H 0.086 0.914 14 C 0.097 3.903 15 N -0.739 5.739 16 Si 0.900 3.100 17 H -0.261 1.261 18 H -0.265 1.265 19 H -0.273 1.273 20 C -0.022 4.022 21 H 0.127 0.873 22 H 0.128 0.872 23 H 0.122 0.878 24 H 0.020 0.980 25 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.290 -4.705 2.727 7.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.039 4.039 3 C 0.005 3.995 4 C -0.118 4.118 5 C -0.141 4.141 6 C -0.101 4.101 7 C -0.233 4.233 8 S 0.284 5.716 9 C -0.565 4.565 10 S 0.107 5.893 11 C 0.129 3.871 12 C -0.465 4.465 13 H 0.104 0.896 14 C -0.128 4.128 15 N -0.360 5.360 16 Si 0.724 3.276 17 H -0.184 1.184 18 H -0.189 1.189 19 H -0.198 1.198 20 C -0.036 4.036 21 H 0.145 0.855 22 H 0.146 0.854 23 H 0.140 0.860 24 H -0.014 1.014 25 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.779 -2.973 1.941 5.953 hybrid contribution -1.427 -0.825 1.025 1.941 sum 3.351 -3.799 2.965 5.870 Atomic orbital electron populations 1.81070 1.12195 1.08788 1.08707 1.25410 0.92563 0.92392 0.93571 1.15953 0.84347 0.93585 1.05659 1.20768 0.94354 0.95921 1.00728 1.20690 0.93433 0.97548 1.02410 1.20631 0.99293 0.90482 0.99668 1.22574 0.96318 0.98840 1.05608 1.83267 1.12012 0.96917 1.79414 1.23820 0.93319 0.97703 1.41707 1.85771 1.94094 1.01194 1.08247 1.17650 0.93844 0.86364 0.89253 1.19081 0.91518 1.23357 1.12504 0.89627 1.25549 0.99284 0.94355 0.93612 1.69853 1.36771 1.24756 1.04652 0.86356 0.81364 0.80022 0.79859 1.18430 1.18941 1.19788 1.19737 0.91717 0.93734 0.98452 0.85539 0.85385 0.86034 1.01446 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.48 18.08 41.84 0.76 -8.72 15 2 C 0.28 5.71 12.77 -22.48 -0.29 5.43 15 3 C 0.01 0.19 5.79 -106.12 -0.61 -0.43 15 4 C -0.09 -1.39 9.71 -39.33 -0.38 -1.77 15 5 C -0.12 -1.61 10.01 -39.73 -0.40 -2.01 15 6 C -0.08 -1.17 10.05 -39.14 -0.39 -1.56 15 7 C -0.12 -2.29 6.40 -38.65 -0.25 -2.54 15 8 S 0.02 0.50 23.18 -107.50 -2.49 -1.99 15 9 C -0.34 -8.21 6.38 30.68 0.20 -8.02 15 10 S -0.05 -1.12 22.45 -107.50 -2.41 -3.54 15 11 C 0.14 3.49 5.40 -105.89 -0.57 2.92 15 12 C -0.43 -11.10 7.58 -38.20 -0.29 -11.39 15 13 H 0.09 2.21 6.30 -52.49 -0.33 1.88 15 14 C 0.10 2.39 4.11 -17.31 -0.07 2.32 15 15 N -0.74 -18.59 10.89 55.53 0.60 -17.98 15 16 Si 0.90 19.35 29.61 -169.99 -5.03 14.32 15 17 H -0.26 -5.70 7.11 56.52 0.40 -5.29 15 18 H -0.26 -5.52 7.11 56.52 0.40 -5.12 15 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 20 C -0.02 -0.49 5.99 -104.80 -0.63 -1.12 15 21 H 0.13 1.51 8.06 -52.49 -0.42 1.09 15 22 H 0.13 1.23 8.06 -52.49 -0.42 0.80 15 23 H 0.12 1.55 8.06 -52.48 -0.42 1.12 15 24 H 0.02 0.45 9.55 96.90 0.93 1.38 15 25 H 0.29 6.64 8.31 -40.82 -0.34 6.30 15 LS Contribution 258.07 15.07 3.89 3.89 Total: -1.00 -27.21 258.07 -8.18 -35.39 By element: Atomic # 1 Polarization: -3.39 SS G_CDS: 0.19 Total: -3.20 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -3.69 Total: -18.16 kcal Atomic # 7 Polarization: -28.07 SS G_CDS: 1.36 Total: -26.71 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -4.91 Total: -5.53 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.21 -8.18 -35.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396225111.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.668 kcal (2) G-P(sol) polarization free energy of solvation -27.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.84 seconds