Wall clock time and date at job start Mon Mar 30 2020 07:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39052 * 119.96810 * 349.56610 * 3 2 1 5 5 C 1.38088 * 120.06195 * 180.02562 * 4 3 2 6 6 C 1.37971 * 120.33586 * 359.95401 * 5 4 3 7 7 C 1.39673 * 120.86258 * 359.97438 * 6 5 4 8 8 S 1.75905 * 129.60797 * 180.02562 * 7 6 5 9 9 C 1.75189 * 92.74065 * 179.80043 * 8 7 6 10 10 S 1.76194 * 124.62967 * 180.22200 * 9 8 7 11 11 C 1.38083 * 110.74480 * 0.32155 * 9 8 7 12 12 C 1.40682 * 123.25509 * 179.88937 * 11 9 8 13 13 H 1.07993 * 120.00492 * 221.25750 * 12 11 9 14 14 C 1.39479 * 120.00086 * 40.98670 * 12 11 9 15 15 N 1.31322 * 119.99658 * 20.78635 * 14 12 11 16 16 Si 1.86796 * 120.00248 * 200.78815 * 14 12 11 17 17 H 1.48498 * 109.47142 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47051 * 119.99786 * 16 14 12 19 19 H 1.48490 * 109.47133 * 239.99707 * 16 14 12 20 20 C 1.39301 * 119.72928 * 0.02626 * 7 6 5 21 21 H 1.08002 * 119.96826 * 359.97438 * 4 3 2 22 22 H 1.07996 * 119.83109 * 179.97438 * 5 4 3 23 23 H 1.08005 * 119.56614 * 180.02562 * 6 5 4 24 24 H 1.41003 * 100.00404 * 270.11308 * 10 9 8 25 25 H 0.97000 * 120.00049 * 180.92612 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2631 -1.1837 0.2182 5 6 4.6439 -1.1853 0.2191 6 6 5.3422 -0.0150 0.0032 7 6 4.6708 1.1892 -0.2201 8 16 5.3200 2.7968 -0.5175 9 6 3.7246 3.5071 -0.6560 10 16 3.4117 5.2104 -0.9806 11 6 2.7457 2.5504 -0.4739 12 6 1.3691 2.8351 -0.5281 13 1 0.6958 2.3840 0.1856 14 6 0.8745 3.7046 -1.5002 15 7 1.5710 3.9366 -2.5891 16 14 -0.7783 4.5390 -1.2531 17 1 -1.3581 4.1140 0.0463 18 1 -0.5939 6.0126 -1.2539 19 1 -1.6965 4.1545 -2.3549 20 6 3.2780 1.2129 -0.2251 21 1 2.7224 -2.1032 0.3878 22 1 5.1800 -2.1072 0.3893 23 1 6.4222 -0.0306 0.0062 24 1 3.3680 5.7071 0.3383 25 1 1.2333 4.5516 -3.2589 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396225111.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:55 Heat of formation + Delta-G solvation = 51.856035 kcal Electronic energy + Delta-G solvation = -14363.560181 eV Core-core repulsion = 11944.879137 eV Total energy + Delta-G solvation = -2418.681045 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.41557 -37.29071 -36.74285 -34.17918 -32.13370 -30.19356 -27.87157 -24.56990 -24.16235 -21.66136 -20.32404 -18.74888 -17.71717 -17.24951 -16.78022 -16.18957 -16.00949 -15.42383 -15.10103 -14.77302 -14.11401 -13.91789 -13.85856 -13.63226 -13.31378 -13.24639 -12.85890 -12.43853 -12.41381 -11.96388 -11.76879 -11.45191 -11.27045 -10.87459 -10.18229 -9.12230 -8.81412 -8.57498 -8.14884 -6.43910 -0.35264 0.19253 0.93936 1.11293 1.32170 1.40146 1.42411 1.65865 1.85315 1.89369 2.07316 2.17621 2.41657 2.87715 3.12118 3.21526 4.06282 4.16167 4.34987 4.55489 4.79921 5.02770 5.13844 5.25771 5.42825 5.46642 5.70066 5.96205 6.28688 6.58306 6.65082 6.78735 8.28094 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.011000 C = 0.007299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.216657 B = 2544.777825 C = 3835.198536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.284 3.716 3 C -0.016 4.016 4 C -0.069 4.069 5 C -0.093 4.093 6 C -0.066 4.066 7 C -0.130 4.130 8 S 0.035 5.965 9 C -0.362 4.362 10 S -0.058 6.058 11 C 0.122 3.878 12 C -0.467 4.467 13 H 0.070 0.930 14 C 0.072 3.928 15 N -0.770 5.770 16 Si 0.944 3.056 17 H -0.271 1.271 18 H -0.254 1.254 19 H -0.266 1.266 20 C -0.064 4.064 21 H 0.165 0.835 22 H 0.187 0.813 23 H 0.158 0.842 24 H 0.022 0.978 25 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.104 -7.333 3.317 10.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.029 4.029 3 C -0.021 4.021 4 C -0.092 4.092 5 C -0.113 4.113 6 C -0.090 4.090 7 C -0.247 4.247 8 S 0.294 5.706 9 C -0.590 4.590 10 S 0.097 5.903 11 C 0.111 3.889 12 C -0.498 4.498 13 H 0.088 0.912 14 C -0.150 4.150 15 N -0.393 5.393 16 Si 0.767 3.233 17 H -0.196 1.196 18 H -0.178 1.178 19 H -0.191 1.191 20 C -0.078 4.078 21 H 0.183 0.817 22 H 0.204 0.796 23 H 0.175 0.825 24 H -0.012 1.012 25 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.602 -5.618 2.534 9.031 hybrid contribution -1.821 -0.233 0.925 2.056 sum 4.780 -5.851 3.459 8.310 Atomic orbital electron populations 1.81048 1.13236 1.09845 1.10299 1.25833 0.93084 0.91450 0.92553 1.16236 0.83503 0.94515 1.07842 1.21337 0.95406 0.95403 0.97076 1.21363 0.92644 0.98783 0.98510 1.21181 1.01257 0.89248 0.97316 1.22795 0.95575 0.99552 1.06772 1.82924 1.09517 0.98035 1.80106 1.24239 0.95584 0.97991 1.41185 1.85659 1.94681 1.01533 1.08441 1.18054 0.93882 0.88222 0.88782 1.19069 0.92054 1.25242 1.13419 0.91167 1.26036 1.01445 0.94365 0.93187 1.69869 1.38230 1.25916 1.05242 0.85710 0.78623 0.79790 0.79212 1.19569 1.17785 1.19058 1.19744 0.93079 0.93380 1.01549 0.81734 0.79581 0.82463 1.01218 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.90 18.08 19.00 0.34 -20.55 15 2 C 0.28 11.83 12.77 88.33 1.13 12.96 15 3 C -0.02 -0.58 5.79 -20.83 -0.12 -0.70 15 4 C -0.07 -1.72 9.71 22.43 0.22 -1.50 15 5 C -0.09 -1.85 10.01 22.17 0.22 -1.63 15 6 C -0.07 -1.69 10.05 22.55 0.23 -1.47 15 7 C -0.13 -4.86 6.40 22.87 0.15 -4.71 15 8 S 0.03 1.43 23.18 -56.49 -1.31 0.12 15 9 C -0.36 -18.00 6.38 67.78 0.43 -17.57 15 10 S -0.06 -2.78 22.45 -56.49 -1.27 -4.05 15 11 C 0.12 6.25 5.40 -20.68 -0.11 6.14 15 12 C -0.47 -24.83 7.58 23.17 0.18 -24.66 15 13 H 0.07 3.83 6.30 -2.91 -0.02 3.81 15 14 C 0.07 3.66 4.11 85.07 0.35 4.01 15 15 N -0.77 -39.97 10.89 21.77 0.24 -39.73 15 16 Si 0.94 40.83 29.61 68.60 2.03 42.86 15 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 18 H -0.25 -10.40 7.11 99.48 0.71 -9.70 15 19 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 20 C -0.06 -2.79 5.99 -19.98 -0.12 -2.91 15 21 H 0.17 2.91 8.06 -2.91 -0.02 2.89 15 22 H 0.19 1.79 8.06 -2.91 -0.02 1.77 15 23 H 0.16 2.99 8.06 -2.91 -0.02 2.96 15 24 H 0.02 1.04 9.55 73.80 0.70 1.74 15 25 H 0.29 13.91 8.31 -92.71 -0.77 13.14 15 Total: -1.00 -62.99 258.07 4.55 -58.44 By element: Atomic # 1 Polarization: -7.03 SS G_CDS: 1.97 Total: -5.06 kcal Atomic # 6 Polarization: -34.58 SS G_CDS: 2.55 Total: -32.04 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 0.58 Total: -60.28 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.58 Total: -3.92 kcal Total: -62.99 4.55 -58.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396225111.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.300 kcal (2) G-P(sol) polarization free energy of solvation -62.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds