Wall clock time and date at job start Mon Mar 30 2020 07:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.36371 * 123.12293 * 136.62623 * 3 2 1 5 5 S 1.76198 * 124.45810 * 359.97438 * 4 3 2 6 6 S 1.75159 * 111.07702 * 179.97438 * 4 3 2 7 7 C 1.75958 * 92.72627 * 359.97438 * 6 4 3 8 8 C 1.40489 * 129.63460 * 179.97438 * 7 6 4 9 9 C 1.35773 * 120.93866 * 179.74065 * 8 7 6 10 10 C 1.41091 * 120.02549 * 0.53764 * 9 8 7 11 11 C 1.41217 * 120.13239 * 179.74203 * 10 9 8 12 12 H 1.08008 * 120.00128 * 155.46000 * 11 10 9 13 13 C 1.39868 * 120.00405 * 335.18535 * 11 10 9 14 14 N 1.30889 * 119.99627 * 341.86336 * 13 11 10 15 15 Si 1.86796 * 120.00534 * 161.86179 * 13 11 10 16 16 H 1.48498 * 109.47260 * 59.99957 * 15 13 11 17 17 H 1.48498 * 109.47588 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46957 * 300.00370 * 15 13 11 19 19 C 1.40040 * 119.72947 * 359.46464 * 10 9 8 20 20 C 1.39821 * 110.35496 * 0.02562 * 7 6 4 21 21 H 1.40999 * 99.99557 * 180.02562 * 5 4 3 22 22 H 1.08000 * 119.53033 * 0.04260 * 8 7 6 23 23 H 1.07999 * 119.98346 * 180.27827 * 9 8 7 24 24 H 0.97007 * 120.00116 * 179.97438 * 14 13 11 25 25 H 1.08002 * 119.96092 * 180.25726 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3128 0.8312 -0.7843 5 16 2.6403 2.0144 -1.9034 6 16 5.0259 0.5667 -0.5328 7 6 4.7415 -0.6948 0.6605 8 6 5.6644 -1.4642 1.3885 9 6 5.2449 -2.3987 2.2796 10 6 3.8650 -2.6165 2.4773 11 6 3.4262 -3.5917 3.3997 12 1 2.4479 -3.5081 3.8495 13 6 4.2563 -4.6690 3.7264 14 7 5.2611 -4.9806 2.9476 15 14 3.9310 -5.6630 5.2741 16 1 2.5753 -6.2643 5.2004 17 1 4.9454 -6.7411 5.3924 18 1 4.0141 -4.7734 6.4603 19 6 2.9323 -1.8577 1.7594 20 6 3.3693 -0.8905 0.8437 21 1 3.8303 2.5641 -2.4227 22 1 6.7226 -1.3067 1.2407 23 1 5.9679 -2.9784 2.8343 24 1 5.8370 -5.7276 3.1743 25 1 1.8751 -2.0184 1.9109 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396225820.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:48 Heat of formation + Delta-G solvation = 50.445716 kcal Electronic energy + Delta-G solvation = -13804.427997 eV Core-core repulsion = 11385.685796 eV Total energy + Delta-G solvation = -2418.742201 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.05052 -37.92062 -36.33285 -34.69343 -31.87621 -30.24964 -27.49152 -25.71623 -23.29860 -22.57223 -19.82712 -19.09152 -18.49467 -17.32908 -16.89029 -16.51885 -15.60558 -15.34857 -15.25378 -14.52948 -14.43330 -14.25126 -13.91245 -13.56396 -13.47119 -13.08185 -12.85509 -12.59555 -12.30085 -12.09484 -11.84824 -11.82338 -11.35356 -11.13548 -10.27673 -9.99058 -8.86314 -8.71166 -8.45463 -6.41001 -0.57172 0.05906 0.27039 0.69967 1.01134 1.07322 1.40579 1.40982 1.48358 1.52934 1.61664 2.19302 2.29689 2.62925 3.06765 3.57968 4.03739 4.29158 4.45369 4.84982 4.90911 5.06518 5.21611 5.49097 5.56748 5.72589 5.94584 6.17340 6.41875 6.50887 6.80661 6.84655 8.22134 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.033732 B = 0.005625 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.861738 B = 4976.399579 C = 5726.049095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.294 3.706 3 C -0.045 4.045 4 C -0.117 4.117 5 S -0.042 6.042 6 S 0.172 5.828 7 C -0.251 4.251 8 C -0.068 4.068 9 C -0.137 4.137 10 C 0.099 3.901 11 C -0.487 4.487 12 H 0.077 0.923 13 C 0.043 3.957 14 N -0.810 5.810 15 Si 0.981 3.019 16 H -0.264 1.264 17 H -0.263 1.263 18 H -0.259 1.259 19 C -0.243 4.243 20 C -0.004 4.004 21 H 0.142 0.858 22 H 0.129 0.871 23 H 0.122 0.878 24 H 0.295 0.705 25 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.318 7.801 -4.960 10.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.021 4.021 3 C -0.073 4.073 4 C -0.352 4.352 5 S 0.122 5.878 6 S 0.432 5.568 7 C -0.368 4.368 8 C -0.090 4.090 9 C -0.158 4.158 10 C 0.096 3.904 11 C -0.516 4.516 12 H 0.095 0.905 13 C -0.175 4.175 14 N -0.434 5.434 15 Si 0.802 3.198 16 H -0.188 1.188 17 H -0.187 1.187 18 H -0.183 1.183 19 C -0.266 4.266 20 C -0.012 4.012 21 H 0.106 0.894 22 H 0.146 0.854 23 H 0.140 0.860 24 H 0.106 0.894 25 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.488 8.939 -6.255 11.454 hybrid contribution 0.124 -1.754 1.617 2.389 sum 3.612 7.185 -4.638 9.283 Atomic orbital electron populations 1.81113 1.12116 1.09682 1.09837 1.25041 0.91926 0.92578 0.92594 1.15766 0.84518 1.02722 1.04244 1.25878 1.02040 1.03400 1.03844 1.87037 1.14847 1.40209 1.45751 1.83066 0.96529 1.36270 1.40886 1.21979 0.95555 1.08852 1.10393 1.20080 0.97774 0.95195 0.95932 1.21122 0.96059 0.98276 1.00389 1.17723 0.92096 0.90797 0.89800 1.19828 1.02971 1.06553 1.22203 0.90524 1.26713 0.93256 0.97769 0.99729 1.69827 1.14104 1.24812 1.34698 0.85247 0.79317 0.77664 0.77578 1.18849 1.18709 1.18282 1.20630 0.97534 1.04542 1.03867 1.18371 0.90913 0.95580 0.96294 0.89372 0.85355 0.86039 0.89366 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -18.24 18.54 19.00 0.35 -17.89 15 2 C 0.29 11.51 14.77 88.33 1.30 12.81 15 3 C -0.05 -1.70 5.90 -20.30 -0.12 -1.82 15 4 C -0.12 -3.58 6.75 67.38 0.45 -3.13 15 5 S -0.04 -0.99 25.55 -56.49 -1.44 -2.43 15 6 S 0.17 4.94 23.18 -56.49 -1.31 3.63 15 7 C -0.25 -9.89 6.46 23.20 0.15 -9.74 15 8 C -0.07 -2.77 9.98 22.25 0.22 -2.55 15 9 C -0.14 -6.47 8.61 22.40 0.19 -6.27 15 10 C 0.10 5.07 5.55 -21.41 -0.12 4.95 15 11 C -0.49 -24.89 9.03 23.40 0.21 -24.68 15 12 H 0.08 3.86 7.91 -2.91 -0.02 3.83 15 13 C 0.04 2.00 5.12 85.23 0.44 2.44 15 14 N -0.81 -38.53 10.99 21.82 0.24 -38.29 15 15 Si 0.98 35.59 29.60 68.60 2.03 37.62 15 16 H -0.26 -9.54 7.11 99.48 0.71 -8.84 15 17 H -0.26 -8.88 7.11 99.48 0.71 -8.18 15 18 H -0.26 -9.21 7.11 99.48 0.71 -8.50 15 19 C -0.24 -11.90 9.57 23.18 0.22 -11.68 15 20 C 0.00 -0.15 6.00 -20.25 -0.12 -0.28 15 21 H 0.14 2.16 9.55 73.80 0.70 2.87 15 22 H 0.13 4.38 8.06 -2.91 -0.02 4.35 15 23 H 0.12 5.82 6.18 -2.91 -0.02 5.80 15 24 H 0.30 12.57 8.30 -92.70 -0.77 11.80 15 25 H 0.09 4.29 8.03 -2.91 -0.02 4.26 15 Total: -1.00 -54.56 264.93 4.67 -49.89 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.97 Total: 7.41 kcal Atomic # 6 Polarization: -42.78 SS G_CDS: 2.83 Total: -39.95 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.59 Total: -56.17 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 2.03 Total: 37.62 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -2.75 Total: 1.20 kcal Total: -54.56 4.67 -49.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396225820.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.336 kcal (2) G-P(sol) polarization free energy of solvation -54.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds