Wall clock time and date at job start Mon Mar 30 2020 07:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.33848 * 122.86524 * 146.80387 * 3 2 1 5 5 S 1.75205 * 111.30634 * 179.97438 * 4 3 2 6 6 C 1.75967 * 92.51945 * 0.02562 * 5 4 3 7 7 C 1.39672 * 110.02147 * 359.97438 * 6 5 4 8 8 C 1.40303 * 119.28441 * 180.02562 * 7 6 5 9 9 C 1.40083 * 120.34523 * 0.02562 * 8 7 6 10 10 C 1.41241 * 120.06141 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99235 * 154.49164 * 10 9 8 12 12 C 1.39819 * 120.00267 * 334.49643 * 10 9 8 13 13 N 1.30910 * 120.00289 * 342.43997 * 12 10 9 14 14 Si 1.86802 * 120.00007 * 162.43815 * 12 10 9 15 15 H 1.48502 * 109.47074 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47207 * 120.00129 * 14 12 10 17 17 H 1.48502 * 109.47008 * 240.00225 * 14 12 10 18 18 C 1.40941 * 119.87718 * 359.97438 * 9 8 7 19 19 C 1.37395 * 119.82822 * 359.97438 * 18 9 8 20 20 S 1.76199 * 119.70301 * 180.02562 * 19 18 9 21 21 H 1.07993 * 124.34878 * 359.97438 * 4 3 2 22 22 H 1.07998 * 119.83133 * 180.02562 * 8 7 6 23 23 H 0.96992 * 120.00594 * 179.97438 * 13 12 10 24 24 H 1.07998 * 120.08982 * 179.97438 * 18 9 8 25 25 H 1.34502 * 103.00115 * 270.02097 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2939 0.9417 -0.6155 5 16 5.0106 0.6491 -0.4227 6 6 4.7348 -0.8054 0.5284 7 6 3.3637 -1.0288 0.6740 8 6 2.9236 -2.1435 1.4034 9 6 3.8495 -3.0226 1.9798 10 6 3.3998 -4.1427 2.7134 11 1 4.0284 -5.0162 2.8045 12 6 2.1410 -4.1206 3.3216 13 7 1.5266 -2.9807 3.5135 14 14 1.3359 -5.7178 3.8602 15 1 2.2299 -6.8576 3.5334 16 1 1.0960 -5.6818 5.3252 17 1 0.0419 -5.8837 3.1507 18 6 5.2307 -2.7873 1.8264 19 6 5.6628 -1.6965 1.1114 20 16 7.3902 -1.4059 0.9211 21 1 2.8753 1.7745 -1.1610 22 1 1.8655 -2.3249 1.5212 23 1 0.6533 -2.9654 3.9350 24 1 5.9475 -3.4626 2.2697 25 1 7.6868 -0.6379 1.9846 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396225855.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:52 Heat of formation + Delta-G solvation = 60.566710 kcal Electronic energy + Delta-G solvation = -14024.579225 eV Core-core repulsion = 11606.275903 eV Total energy + Delta-G solvation = -2418.303322 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.52028 -36.35754 -34.70892 -33.35050 -29.94620 -28.89957 -25.87015 -23.79948 -22.01233 -20.84750 -18.40829 -17.04311 -16.61790 -16.40920 -15.26469 -14.71600 -14.34475 -13.89398 -13.64636 -13.30106 -12.81765 -12.69918 -12.32560 -11.89645 -11.68827 -11.42963 -11.36554 -11.18829 -10.83831 -10.57538 -10.23714 -10.04013 -9.73645 -9.32922 -8.57058 -7.77902 -7.73395 -7.10729 -7.04899 -4.64562 1.17165 1.85716 2.10271 2.31992 2.49987 2.68004 2.91434 2.96984 3.01303 3.17910 3.38163 3.74486 3.87098 4.29418 4.63217 5.11566 5.21272 5.87471 6.03904 6.29165 6.48978 6.57293 6.85605 6.90189 6.98941 7.26202 7.57706 7.71117 7.96423 8.20060 8.47978 8.51381 9.89091 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.008544 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.364076 B = 3276.319245 C = 4775.164760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.285 3.715 3 C -0.029 4.029 4 C -0.156 4.156 5 S 0.102 5.898 6 C -0.207 4.207 7 C -0.029 4.029 8 C -0.125 4.125 9 C 0.103 3.897 10 C -0.446 4.446 11 H 0.088 0.912 12 C 0.073 3.927 13 N -0.781 5.781 14 Si 0.912 3.088 15 H -0.257 1.257 16 H -0.272 1.272 17 H -0.269 1.269 18 C -0.118 4.118 19 C -0.044 4.044 20 S -0.158 6.158 21 H 0.165 0.835 22 H 0.128 0.872 23 H 0.286 0.714 24 H 0.120 0.880 25 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.962 3.098 -3.466 6.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.032 4.032 3 C -0.048 4.048 4 C -0.296 4.296 5 S 0.365 5.635 6 C -0.325 4.325 7 C -0.037 4.037 8 C -0.148 4.148 9 C 0.097 3.903 10 C -0.475 4.475 11 H 0.106 0.894 12 C -0.147 4.147 13 N -0.405 5.405 14 Si 0.736 3.264 15 H -0.180 1.180 16 H -0.197 1.197 17 H -0.194 1.194 18 C -0.142 4.142 19 C -0.160 4.160 20 S 0.000 6.000 21 H 0.182 0.818 22 H 0.145 0.855 23 H 0.098 0.902 24 H 0.138 0.862 25 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 5.241 4.011 -4.146 7.794 hybrid contribution -2.163 -0.858 1.838 2.965 sum 3.079 3.153 -2.308 4.975 Atomic orbital electron populations 1.81138 1.11969 1.08681 1.09523 1.25216 0.92076 0.92977 0.92925 1.15930 0.84832 0.98639 1.05361 1.25377 0.98714 1.01924 1.03540 1.83649 1.00718 1.23743 1.55400 1.21858 0.95288 1.02379 1.12955 1.18527 0.89709 0.95781 0.99714 1.21255 1.00512 0.94471 0.98555 1.17399 0.89688 0.92721 0.90495 1.19616 1.00479 1.00684 1.26683 0.89380 1.25977 0.96826 0.97956 0.93952 1.69804 1.14052 1.26731 1.29890 0.86172 0.79721 0.81690 0.78821 1.18005 1.19737 1.19434 1.21550 0.96268 0.96331 1.00024 1.19920 0.91030 0.99246 1.05844 1.85571 1.08118 1.68795 1.37520 0.81787 0.85451 0.90246 0.86203 0.96847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.99 18.54 41.84 0.78 -8.22 15 2 C 0.28 5.57 15.34 -22.47 -0.34 5.23 15 3 C -0.03 -0.54 5.82 -106.17 -0.62 -1.15 15 4 C -0.16 -2.42 10.83 29.19 0.32 -2.10 15 5 S 0.10 1.64 22.81 -107.50 -2.45 -0.82 15 6 C -0.21 -4.19 6.36 -37.90 -0.24 -4.43 15 7 C -0.03 -0.63 6.00 -105.25 -0.63 -1.26 15 8 C -0.13 -2.99 8.47 -38.11 -0.32 -3.32 15 9 C 0.10 2.44 5.55 -107.04 -0.59 1.85 15 10 C -0.45 -10.53 9.03 -37.85 -0.34 -10.87 15 11 H 0.09 1.96 7.90 -52.49 -0.41 1.55 15 12 C 0.07 1.68 5.12 -17.35 -0.09 1.59 15 13 N -0.78 -18.92 10.99 55.54 0.61 -18.31 15 14 Si 0.91 17.35 29.59 -169.99 -5.03 12.32 15 15 H -0.26 -4.77 7.11 56.52 0.40 -4.37 15 16 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 17 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 18 C -0.12 -2.55 9.47 -38.87 -0.37 -2.92 15 19 C -0.04 -0.90 6.13 -38.74 -0.24 -1.14 15 20 S -0.16 -2.71 25.41 -107.50 -2.73 -5.44 15 21 H 0.16 1.94 8.06 -52.49 -0.42 1.52 15 22 H 0.13 3.24 6.13 -52.49 -0.32 2.92 15 23 H 0.29 6.40 8.30 -40.82 -0.34 6.06 15 24 H 0.12 2.38 8.06 -52.49 -0.42 1.95 15 25 H 0.07 1.09 9.07 97.61 0.89 1.98 15 LS Contribution 264.29 15.07 3.98 3.98 Total: -1.00 -24.74 264.29 -8.15 -32.88 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: 0.17 Total: 2.12 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -3.47 Total: -18.52 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 1.39 Total: -26.52 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -5.18 Total: -6.26 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -24.74 -8.15 -32.88 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396225855.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.451 kcal (2) G-P(sol) polarization free energy of solvation -24.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds