Wall clock time and date at job start Mon Mar 30 2020 07:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.33848 * 122.86524 * 146.80387 * 3 2 1 5 5 S 1.75205 * 111.30634 * 179.97438 * 4 3 2 6 6 C 1.75967 * 92.51945 * 0.02562 * 5 4 3 7 7 C 1.39672 * 110.02147 * 359.97438 * 6 5 4 8 8 C 1.40303 * 119.28441 * 180.02562 * 7 6 5 9 9 C 1.40083 * 120.34523 * 0.02562 * 8 7 6 10 10 C 1.41241 * 120.06141 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99235 * 154.49164 * 10 9 8 12 12 C 1.39819 * 120.00267 * 334.49643 * 10 9 8 13 13 N 1.30910 * 120.00289 * 342.43997 * 12 10 9 14 14 Si 1.86802 * 120.00007 * 162.43815 * 12 10 9 15 15 H 1.48502 * 109.47074 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47207 * 120.00129 * 14 12 10 17 17 H 1.48502 * 109.47008 * 240.00225 * 14 12 10 18 18 C 1.40941 * 119.87718 * 359.97438 * 9 8 7 19 19 C 1.37395 * 119.82822 * 359.97438 * 18 9 8 20 20 S 1.76199 * 119.70301 * 180.02562 * 19 18 9 21 21 H 1.07993 * 124.34878 * 359.97438 * 4 3 2 22 22 H 1.07998 * 119.83133 * 180.02562 * 8 7 6 23 23 H 0.96992 * 120.00594 * 179.97438 * 13 12 10 24 24 H 1.07998 * 120.08982 * 179.97438 * 18 9 8 25 25 H 1.34502 * 103.00115 * 270.02097 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2939 0.9417 -0.6155 5 16 5.0106 0.6491 -0.4227 6 6 4.7348 -0.8054 0.5284 7 6 3.3637 -1.0288 0.6740 8 6 2.9236 -2.1435 1.4034 9 6 3.8495 -3.0226 1.9798 10 6 3.3998 -4.1427 2.7134 11 1 4.0284 -5.0162 2.8045 12 6 2.1410 -4.1206 3.3216 13 7 1.5266 -2.9807 3.5135 14 14 1.3359 -5.7178 3.8602 15 1 2.2299 -6.8576 3.5334 16 1 1.0960 -5.6818 5.3252 17 1 0.0419 -5.8837 3.1507 18 6 5.2307 -2.7873 1.8264 19 6 5.6628 -1.6965 1.1114 20 16 7.3902 -1.4059 0.9211 21 1 2.8753 1.7745 -1.1610 22 1 1.8655 -2.3249 1.5212 23 1 0.6533 -2.9654 3.9350 24 1 5.9475 -3.4626 2.2697 25 1 7.6868 -0.6379 1.9846 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396225855.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:52 Heat of formation + Delta-G solvation = 49.187347 kcal Electronic energy + Delta-G solvation = -14025.072671 eV Core-core repulsion = 11606.275903 eV Total energy + Delta-G solvation = -2418.796768 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.10480 -37.92125 -36.31656 -34.96813 -31.62360 -30.48110 -27.56548 -25.27930 -23.63656 -22.48782 -19.96556 -18.64078 -18.11478 -17.85128 -16.88475 -16.27762 -15.93750 -15.42464 -15.18490 -14.85229 -14.33012 -14.25964 -13.92354 -13.50167 -13.20632 -13.02823 -12.89896 -12.73836 -12.34371 -12.08633 -11.83199 -11.60116 -11.32941 -10.95775 -10.13658 -9.37843 -9.10977 -8.74595 -8.59661 -6.41228 -0.27419 0.33613 0.69315 0.76660 0.91846 1.14128 1.36954 1.40614 1.52749 1.64614 1.93567 2.15377 2.32354 2.64266 3.18588 3.47798 3.78711 4.38928 4.56685 4.75963 4.82659 5.00995 5.13695 5.27888 5.31918 5.57222 5.87054 5.97318 6.42900 6.48485 6.75708 6.78396 8.20838 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.008544 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.364076 B = 3276.319245 C = 4775.164760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.297 3.703 3 C -0.069 4.069 4 C -0.116 4.116 5 S 0.178 5.822 6 C -0.227 4.227 7 C -0.037 4.037 8 C -0.157 4.157 9 C 0.080 3.920 10 C -0.478 4.478 11 H 0.092 0.908 12 C 0.035 3.965 13 N -0.820 5.820 14 Si 0.979 3.021 15 H -0.248 1.248 16 H -0.266 1.266 17 H -0.272 1.272 18 C -0.129 4.129 19 C -0.056 4.056 20 S -0.125 6.125 21 H 0.212 0.788 22 H 0.100 0.900 23 H 0.288 0.712 24 H 0.130 0.870 25 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.660 4.493 -4.643 9.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.018 4.018 3 C -0.088 4.088 4 C -0.256 4.256 5 S 0.442 5.558 6 C -0.345 4.345 7 C -0.045 4.045 8 C -0.180 4.180 9 C 0.074 3.926 10 C -0.507 4.507 11 H 0.110 0.890 12 C -0.181 4.181 13 N -0.445 5.445 14 Si 0.800 3.200 15 H -0.171 1.171 16 H -0.191 1.191 17 H -0.197 1.197 18 C -0.152 4.152 19 C -0.172 4.172 20 S 0.033 5.967 21 H 0.229 0.771 22 H 0.118 0.882 23 H 0.098 0.902 24 H 0.148 0.852 25 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.962 5.406 -5.326 10.298 hybrid contribution -2.469 -1.083 2.063 3.395 sum 4.492 4.324 -3.262 7.037 Atomic orbital electron populations 1.81131 1.12739 1.09708 1.10884 1.25359 0.92243 0.92185 0.92047 1.15841 0.84418 1.00012 1.08488 1.25992 0.98544 1.00999 1.00050 1.83434 1.00001 1.19783 1.52599 1.22355 0.94856 1.04257 1.13006 1.18775 0.91129 0.95550 0.99092 1.21097 0.99293 0.96536 1.01054 1.17695 0.90939 0.93120 0.90854 1.19870 1.01592 1.01252 1.27970 0.89020 1.26757 0.96984 1.00730 0.93619 1.69890 1.14515 1.28664 1.31437 0.85185 0.78425 0.78020 0.78411 1.17144 1.19123 1.19748 1.21684 0.95593 0.97291 1.00635 1.20196 0.93530 0.98669 1.04785 1.85388 1.04720 1.68997 1.37592 0.77146 0.88198 0.90173 0.85239 0.95742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -19.49 18.54 19.00 0.35 -19.14 15 2 C 0.30 11.62 15.34 88.33 1.35 12.98 15 3 C -0.07 -2.49 5.82 -20.87 -0.12 -2.62 15 4 C -0.12 -3.12 10.83 66.82 0.72 -2.40 15 5 S 0.18 4.97 22.81 -56.49 -1.29 3.69 15 6 C -0.23 -8.82 6.36 23.36 0.15 -8.67 15 7 C -0.04 -1.60 6.00 -20.27 -0.12 -1.72 15 8 C -0.16 -7.86 8.47 23.22 0.20 -7.66 15 9 C 0.08 3.94 5.55 -21.43 -0.12 3.82 15 10 C -0.48 -23.64 9.03 23.39 0.21 -23.43 15 11 H 0.09 4.26 7.90 -2.91 -0.02 4.24 15 12 C 0.04 1.68 5.12 85.21 0.44 2.12 15 13 N -0.82 -41.96 10.99 21.81 0.24 -41.72 15 14 Si 0.98 36.76 29.59 68.60 2.03 38.79 15 15 H -0.25 -8.87 7.11 99.48 0.71 -8.16 15 16 H -0.27 -9.65 7.11 99.48 0.71 -8.94 15 17 H -0.27 -10.24 7.11 99.48 0.71 -9.53 15 18 C -0.13 -5.62 9.47 22.73 0.22 -5.41 15 19 C -0.06 -2.21 6.13 22.81 0.14 -2.07 15 20 S -0.12 -3.93 25.41 -56.49 -1.44 -5.37 15 21 H 0.21 3.70 8.06 -2.91 -0.02 3.67 15 22 H 0.10 5.46 6.13 -2.91 -0.02 5.44 15 23 H 0.29 13.61 8.30 -92.71 -0.77 12.84 15 24 H 0.13 5.19 8.06 -2.91 -0.02 5.17 15 25 H 0.08 2.29 9.07 73.35 0.67 2.95 15 Total: -1.00 -56.01 264.29 4.89 -51.12 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 1.93 Total: 7.68 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: 3.06 Total: -35.05 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 0.59 Total: -60.86 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.79 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.72 Total: -1.68 kcal Total: -56.01 4.89 -51.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396225855.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.308 kcal (2) G-P(sol) polarization free energy of solvation -56.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds