Wall clock time and date at job start Mon Mar 30 2020 07:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 S 1.75434 * 124.76878 * 154.29175 * 3 2 1 5 5 C 1.76018 * 91.83530 * 179.97438 * 4 3 2 6 6 C 1.39008 * 130.01511 * 179.47211 * 5 4 3 7 7 C 1.40354 * 120.05103 * 179.97438 * 6 5 4 8 8 C 1.40901 * 120.19485 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99627 * 150.15092 * 8 7 6 10 10 C 1.39895 * 119.99926 * 330.13992 * 8 7 6 11 11 N 1.30860 * 119.99922 * 161.67892 * 10 8 7 12 12 Si 1.86798 * 120.00255 * 341.67765 * 10 8 7 13 13 H 1.48510 * 109.47101 * 95.41143 * 12 10 8 14 14 H 1.48498 * 109.47691 * 215.40897 * 12 10 8 15 15 H 1.48495 * 109.47284 * 335.41242 * 12 10 8 16 16 C 1.41299 * 119.60783 * 359.97026 * 7 6 5 17 17 C 1.35108 * 120.34908 * 0.02562 * 16 7 6 18 18 C 1.40353 * 109.96355 * 359.69240 * 5 4 3 19 19 C 1.36490 * 124.77417 * 333.72250 * 3 2 1 20 20 S 1.76196 * 122.47844 * 0.05700 * 19 3 2 21 21 H 1.08005 * 119.97284 * 359.96445 * 6 5 4 22 22 H 0.97003 * 119.99992 * 180.02562 * 11 10 8 23 23 H 1.08002 * 119.83123 * 180.02562 * 16 7 6 24 24 H 1.08000 * 119.54659 * 179.97438 * 17 16 7 25 25 H 1.34498 * 102.99948 * 269.97855 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5678 1.2996 -0.6251 5 6 5.0455 0.4383 -0.2093 6 6 6.3743 0.8021 -0.3946 7 6 7.4029 -0.0568 0.0229 8 6 8.7508 0.3086 -0.1639 9 1 9.5058 -0.0425 0.5239 10 6 9.1112 1.1260 -1.2405 11 7 10.2579 1.7564 -1.2283 12 14 7.9555 1.3178 -2.6955 13 1 7.1303 2.5391 -2.5146 14 1 8.7485 1.4370 -3.9454 15 1 7.0688 0.1298 -2.7833 16 6 7.0787 -1.2900 0.6317 17 6 5.7872 -1.6436 0.8119 18 6 4.7311 -0.7910 0.3906 19 6 3.3469 -1.0043 0.4963 20 16 2.6662 -2.4622 1.2144 21 1 6.6154 1.7462 -0.8604 22 1 10.5076 2.3235 -1.9746 23 1 7.8673 -1.9534 0.9547 24 1 5.5541 -2.5894 1.2783 25 1 2.5485 -2.1332 2.5132 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396226203.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:57 Heat of formation + Delta-G solvation = 61.805156 kcal Electronic energy + Delta-G solvation = -13925.968817 eV Core-core repulsion = 11507.719199 eV Total energy + Delta-G solvation = -2418.249618 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -38.75671 -36.51391 -35.10305 -33.45523 -30.42667 -29.81558 -26.19936 -23.16999 -22.59594 -20.62655 -18.58537 -18.06333 -16.97965 -16.27147 -15.50077 -15.13988 -14.37934 -14.03591 -13.64582 -13.37688 -13.01109 -12.89792 -12.67208 -12.34402 -12.24723 -11.62043 -11.23547 -11.17119 -10.87782 -10.65101 -10.30876 -10.17436 -9.82596 -9.48557 -8.93997 -7.97305 -7.87241 -7.52322 -7.24866 -4.94594 0.63063 1.45899 1.98205 2.19539 2.37723 2.52522 2.84946 2.95031 3.00688 3.07457 3.39104 3.61869 3.65288 4.05265 4.42638 4.90013 5.53030 5.82771 5.88766 6.10514 6.25487 6.35086 6.59144 6.71938 7.04071 7.17150 7.28758 7.52088 7.74020 7.80364 8.05935 8.19935 9.44809 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.029985 B = 0.006976 C = 0.005897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.572766 B = 4012.733001 C = 4747.059551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.301 3.699 3 C -0.184 4.184 4 S 0.106 5.894 5 C -0.041 4.041 6 C -0.238 4.238 7 C 0.105 3.895 8 C -0.385 4.385 9 H 0.105 0.895 10 C 0.077 3.923 11 N -0.766 5.766 12 Si 0.913 3.087 13 H -0.262 1.262 14 H -0.283 1.283 15 H -0.235 1.235 16 C -0.168 4.168 17 C -0.038 4.038 18 C -0.191 4.191 19 C 0.022 3.978 20 S -0.117 6.117 21 H 0.110 0.890 22 H 0.297 0.703 23 H 0.116 0.884 24 H 0.116 0.884 25 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.274 -2.253 0.509 4.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.013 4.013 3 C -0.305 4.305 4 S 0.370 5.630 5 C -0.159 4.159 6 C -0.266 4.266 7 C 0.097 3.903 8 C -0.412 4.412 9 H 0.123 0.877 10 C -0.149 4.149 11 N -0.386 5.386 12 Si 0.737 3.263 13 H -0.188 1.188 14 H -0.210 1.210 15 H -0.157 1.157 16 C -0.187 4.187 17 C -0.059 4.059 18 C -0.197 4.197 19 C -0.108 4.108 20 S 0.038 5.962 21 H 0.128 0.872 22 H 0.108 0.892 23 H 0.134 0.866 24 H 0.134 0.866 25 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.575 -1.561 -0.064 5.790 hybrid contribution 0.848 0.169 0.577 1.040 sum -4.726 -1.392 0.513 4.954 Atomic orbital electron populations 1.81162 1.11168 1.08485 1.10745 1.24243 0.90907 0.93149 0.92985 1.19463 0.88312 1.02526 1.20246 1.83773 0.94995 1.18771 1.65413 1.22287 0.96443 0.96348 1.00789 1.20208 0.89057 1.01707 1.15654 1.17625 0.92661 0.90146 0.89843 1.19845 0.93318 1.20006 1.08040 0.87733 1.26462 0.95925 0.91501 1.00980 1.69674 1.20706 1.16957 1.31294 0.86201 0.79961 0.82058 0.78045 1.18768 1.20964 1.15746 1.20795 0.95306 0.96955 1.05650 1.20481 0.91438 0.97365 0.96632 1.17409 0.90733 0.97777 1.13799 1.20363 0.94081 0.95049 1.01305 1.85695 1.83220 1.18372 1.08908 0.87204 0.89181 0.86584 0.86586 0.95823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.17 18.54 41.84 0.78 -7.40 15 2 C 0.30 5.44 15.10 -22.48 -0.34 5.10 15 3 C -0.18 -3.33 6.26 -38.29 -0.24 -3.57 15 4 S 0.11 1.90 23.21 -107.50 -2.50 -0.60 15 5 C -0.04 -0.82 6.44 -38.50 -0.25 -1.07 15 6 C -0.24 -5.03 7.20 -38.50 -0.28 -5.30 15 7 C 0.10 2.21 5.10 -106.93 -0.55 1.67 15 8 C -0.39 -8.54 9.54 -37.95 -0.36 -8.90 15 9 H 0.10 2.36 8.06 -52.49 -0.42 1.94 15 10 C 0.08 1.68 5.40 -17.35 -0.09 1.58 15 11 N -0.77 -17.09 13.93 55.54 0.77 -16.31 15 12 Si 0.91 17.86 24.52 -169.99 -4.17 13.70 15 13 H -0.26 -5.04 6.71 56.52 0.38 -4.66 15 14 H -0.28 -5.33 7.11 56.52 0.40 -4.93 15 15 H -0.23 -4.77 6.87 56.52 0.39 -4.38 15 16 C -0.17 -3.20 9.68 -39.53 -0.38 -3.58 15 17 C -0.04 -0.70 9.67 -39.20 -0.38 -1.08 15 18 C -0.19 -3.68 5.87 -106.77 -0.63 -4.31 15 19 C 0.02 0.39 6.15 -39.38 -0.24 0.15 15 20 S -0.12 -1.84 24.77 -107.50 -2.66 -4.51 15 21 H 0.11 2.31 4.72 -52.48 -0.25 2.06 15 22 H 0.30 5.94 8.30 -40.82 -0.34 5.60 15 23 H 0.12 1.96 8.06 -52.49 -0.42 1.54 15 24 H 0.12 1.82 7.76 -52.49 -0.41 1.41 15 25 H 0.08 1.11 9.07 97.61 0.89 2.00 15 LS Contribution 258.03 15.07 3.89 3.89 Total: -1.00 -22.54 258.03 -7.41 -29.95 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: 0.22 Total: 0.58 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -3.74 Total: -19.30 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 1.55 Total: -23.71 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -4.17 Total: 13.70 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -5.16 Total: -5.10 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -22.54 -7.41 -29.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396226203.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.752 kcal (2) G-P(sol) polarization free energy of solvation -22.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds