Wall clock time and date at job start Mon Mar 30 2020 07:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.37333 * 123.13137 * 290.56813 * 3 2 1 5 5 S 1.76202 * 124.61776 * 0.03540 * 4 3 2 6 6 S 1.75224 * 110.75990 * 179.77396 * 4 3 2 7 7 C 1.75918 * 92.61462 * 0.22803 * 6 4 3 8 8 C 1.39613 * 129.83008 * 179.97438 * 7 6 4 9 9 C 1.38222 * 121.61411 * 180.02562 * 8 7 6 10 10 C 1.37472 * 121.12049 * 0.02562 * 9 8 7 11 11 C 1.40423 * 119.91935 * 0.02562 * 10 9 8 12 12 C 1.40660 * 120.40185 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00221 * 151.10225 * 12 11 10 14 14 C 1.39861 * 119.99554 * 331.09895 * 12 11 10 15 15 N 1.30909 * 120.00389 * 345.95877 * 14 12 11 16 16 Si 1.86803 * 119.99783 * 165.96561 * 14 12 11 17 17 H 1.48494 * 109.47622 * 59.99539 * 16 14 12 18 18 H 1.48500 * 109.47306 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46926 * 299.99364 * 16 14 12 20 20 C 1.39347 * 110.44340 * 0.02562 * 7 6 4 21 21 H 1.40995 * 100.00013 * 179.72437 * 5 4 3 22 22 H 1.08005 * 119.19029 * 0.02562 * 8 7 6 23 23 H 1.08002 * 119.43694 * 180.02562 * 9 8 7 24 24 H 1.07996 * 120.03655 * 179.97438 * 10 9 8 25 25 H 0.97001 * 120.00472 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3188 -0.4031 1.0767 5 16 2.6518 -0.9771 2.6033 6 16 5.0303 -0.2765 0.7230 7 6 4.7319 0.3365 -0.8987 8 6 5.6368 0.7090 -1.8945 9 6 5.2102 1.1749 -3.1238 10 6 3.8714 1.2903 -3.4143 11 6 2.9127 0.9322 -2.4528 12 6 1.5403 1.0457 -2.7394 13 1 0.8322 0.3854 -2.2608 14 6 1.0927 2.0138 -3.6441 15 7 1.8908 2.9836 -4.0132 16 14 -0.6442 1.9231 -4.3256 17 1 -1.6191 1.9984 -3.2081 18 1 -0.8702 3.0570 -5.2575 19 1 -0.8239 0.6414 -5.0538 20 6 3.3626 0.4329 -1.1383 21 1 3.8444 -1.2468 3.3055 22 1 6.6963 0.6312 -1.6993 23 1 5.9409 1.4530 -3.8689 24 1 3.5575 1.6569 -4.3805 25 1 1.5802 3.6553 -4.6403 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396226205.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:03 Heat of formation + Delta-G solvation = 53.361743 kcal Electronic energy + Delta-G solvation = -14174.360128 eV Core-core repulsion = 11755.744375 eV Total energy + Delta-G solvation = -2418.615752 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.85669 -37.64968 -36.11431 -35.04850 -31.70354 -30.21599 -27.22582 -25.76448 -23.21072 -22.47039 -20.04753 -19.09703 -17.90034 -17.58136 -17.02432 -16.22283 -15.69023 -15.35237 -15.23415 -14.69412 -14.28102 -14.09558 -13.82339 -13.56799 -13.31106 -13.08234 -12.95500 -12.57292 -12.33664 -12.13459 -11.77594 -11.56735 -11.42183 -11.24599 -10.24698 -9.86569 -8.88087 -8.69908 -8.46015 -6.40803 -0.47659 0.20841 0.38950 0.82130 0.94080 0.95591 1.30671 1.39983 1.43997 1.50105 1.75019 2.10206 2.41968 2.58792 3.20761 3.51290 4.15033 4.44230 4.54072 4.90013 4.97598 5.02653 5.13217 5.34389 5.64191 5.85477 6.01861 6.10177 6.50486 6.52746 6.67071 6.79753 8.10103 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.020919 B = 0.008672 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.151459 B = 3227.880011 C = 4484.032123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.299 3.701 3 C 0.014 3.986 4 C -0.184 4.184 5 S -0.059 6.059 6 S 0.149 5.851 7 C -0.096 4.096 8 C -0.217 4.217 9 C -0.059 4.059 10 C -0.199 4.199 11 C 0.124 3.876 12 C -0.462 4.462 13 H 0.074 0.926 14 C 0.045 3.955 15 N -0.792 5.792 16 Si 0.964 3.036 17 H -0.273 1.273 18 H -0.252 1.252 19 H -0.256 1.256 20 C -0.173 4.173 21 H 0.136 0.864 22 H 0.128 0.872 23 H 0.131 0.869 24 H 0.113 0.887 25 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.936 -3.606 5.192 8.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.016 4.016 3 C -0.010 4.010 4 C -0.416 4.416 5 S 0.103 5.897 6 S 0.410 5.590 7 C -0.212 4.212 8 C -0.243 4.243 9 C -0.080 4.080 10 C -0.220 4.220 11 C 0.119 3.881 12 C -0.490 4.490 13 H 0.092 0.908 14 C -0.174 4.174 15 N -0.415 5.415 16 Si 0.785 3.215 17 H -0.198 1.198 18 H -0.176 1.176 19 H -0.180 1.180 20 C -0.182 4.182 21 H 0.100 0.900 22 H 0.146 0.854 23 H 0.148 0.852 24 H 0.130 0.870 25 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.890 -4.023 6.770 9.270 hybrid contribution -0.465 0.705 -1.709 1.906 sum 4.424 -3.318 5.061 7.496 Atomic orbital electron populations 1.81036 1.12371 1.10054 1.09587 1.25074 0.92185 0.92691 0.91688 1.15803 0.84384 1.06600 0.94204 1.25567 1.01059 1.14067 1.00948 1.86806 1.14692 1.81187 1.06988 1.83082 0.97842 1.69626 1.08415 1.22200 0.95730 1.05131 0.98145 1.19935 0.97496 1.12944 0.93901 1.20836 0.95429 0.95777 0.95955 1.21033 0.92370 1.09211 0.99436 1.18684 0.93753 0.87783 0.87900 1.19802 0.93493 1.14673 1.21037 0.90758 1.26570 1.03556 0.93151 0.94168 1.69821 1.38748 1.08528 1.24397 0.85494 0.77061 0.80030 0.78939 1.19792 1.17553 1.17971 1.19779 0.90857 1.13590 0.93943 0.90015 0.85439 0.85166 0.86952 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -21.14 18.11 19.00 0.34 -20.79 15 2 C 0.30 13.54 12.46 88.33 1.10 14.64 15 3 C 0.01 0.61 5.90 -20.40 -0.12 0.49 15 4 C -0.18 -6.45 6.79 67.61 0.46 -5.99 15 5 S -0.06 -1.66 25.59 -56.49 -1.45 -3.10 15 6 S 0.15 4.67 23.19 -56.49 -1.31 3.36 15 7 C -0.10 -3.84 6.41 22.87 0.15 -3.69 15 8 C -0.22 -8.26 10.01 22.60 0.23 -8.03 15 9 C -0.06 -2.36 9.95 22.09 0.22 -2.14 15 10 C -0.20 -9.40 8.63 22.62 0.20 -9.20 15 11 C 0.12 6.29 5.72 -19.67 -0.11 6.18 15 12 C -0.46 -24.00 8.27 23.25 0.19 -23.81 15 13 H 0.07 3.94 5.56 -2.91 -0.02 3.92 15 14 C 0.05 2.18 5.18 85.22 0.44 2.62 15 15 N -0.79 -38.25 11.03 21.82 0.24 -38.01 15 16 Si 0.96 38.12 29.58 68.60 2.03 40.15 15 17 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 18 H -0.25 -9.01 7.11 99.48 0.71 -8.30 15 19 H -0.26 -9.88 7.11 99.48 0.71 -9.18 15 20 C -0.17 -8.04 6.17 -18.69 -0.12 -8.15 15 21 H 0.14 2.69 9.55 73.80 0.70 3.39 15 22 H 0.13 3.99 8.06 -2.91 -0.02 3.97 15 23 H 0.13 4.31 8.06 -2.91 -0.02 4.29 15 24 H 0.11 5.48 6.34 -2.91 -0.02 5.46 15 25 H 0.30 12.89 8.30 -92.71 -0.77 12.12 15 Total: -1.00 -54.91 260.18 4.47 -50.44 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: 1.97 Total: 5.04 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 2.63 Total: -37.09 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: 0.58 Total: -58.80 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.76 Total: 0.26 kcal Total: -54.91 4.47 -50.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396226205.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.806 kcal (2) G-P(sol) polarization free energy of solvation -54.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds