Wall clock time and date at job start Mon Mar 30 2020 07:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.47462 * 120.11614 * 299.54500 * 3 2 1 5 5 C 1.40162 * 128.36035 * 0.02562 * 4 3 2 6 6 C 1.32608 * 115.92214 * 180.02562 * 5 4 3 7 7 S 1.75454 * 110.76863 * 0.02562 * 6 5 4 8 8 C 1.40219 * 119.13007 * 180.02562 * 4 3 2 9 9 C 1.38837 * 120.90511 * 359.72036 * 8 4 3 10 10 C 1.40094 * 121.34814 * 0.56589 * 9 8 4 11 11 C 1.40758 * 120.16285 * 179.71457 * 10 9 8 12 12 H 1.08000 * 120.00344 * 153.75136 * 11 10 9 13 13 C 1.39897 * 120.00039 * 333.47181 * 11 10 9 14 14 N 1.30917 * 119.99937 * 343.07205 * 13 11 10 15 15 Si 1.86797 * 120.00253 * 163.07299 * 13 11 10 16 16 H 1.48496 * 109.47446 * 89.99772 * 15 13 11 17 17 H 1.48499 * 109.47266 * 210.00075 * 15 13 11 18 18 H 1.48504 * 109.47076 * 329.99735 * 15 13 11 19 19 C 1.39249 * 120.11630 * 119.56596 * 3 2 1 20 20 S 1.76193 * 120.41619 * 359.97438 * 19 3 2 21 21 H 1.07998 * 122.04238 * 359.97438 * 5 4 3 22 22 H 1.07993 * 124.61421 * 179.97438 * 6 5 4 23 23 H 1.07998 * 119.32715 * 180.28653 * 9 8 4 24 24 H 0.96997 * 120.00484 * 179.97438 * 14 13 11 25 25 H 1.40997 * 100.00104 * 269.97542 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3082 -0.6280 1.1097 5 6 2.7943 -1.2716 2.2438 6 6 3.6913 -1.7523 3.0939 7 16 5.3204 -1.4287 2.5285 8 6 4.7102 -0.6150 1.0890 9 6 5.4024 -0.0259 0.0395 10 6 4.7287 0.5846 -1.0264 11 6 5.4557 1.1796 -2.0746 12 1 5.0149 1.2653 -3.0568 13 6 6.7469 1.6653 -1.8427 14 7 7.1571 1.8752 -0.6172 15 14 7.8860 2.0145 -3.2814 16 1 7.7054 3.4197 -3.7261 17 1 9.2945 1.8059 -2.8597 18 1 7.5636 1.0953 -4.4024 19 6 3.2665 0.5953 -1.0477 20 16 2.3994 1.3512 -2.3823 21 1 1.7325 -1.3694 2.4153 22 1 3.4517 -2.2715 4.0101 23 1 6.4823 -0.0346 0.0472 24 1 8.0525 2.2116 -0.4563 25 1 2.2805 0.2485 -3.2529 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396227146.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:03 Heat of formation + Delta-G solvation = 66.787190 kcal Electronic energy + Delta-G solvation = -14083.659352 eV Core-core repulsion = 11665.625770 eV Total energy + Delta-G solvation = -2418.033581 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.31961 -35.87444 -35.25990 -33.09309 -30.25268 -29.21740 -25.58680 -22.92888 -22.63713 -19.91213 -19.17439 -16.89213 -16.60919 -15.81526 -15.32596 -15.06438 -14.38247 -13.62389 -13.40687 -13.16245 -12.59668 -12.44101 -12.36147 -12.16774 -11.78870 -11.61322 -11.39570 -11.00776 -10.74709 -10.46967 -10.43527 -10.00365 -9.76546 -9.33613 -8.69107 -7.65863 -7.34049 -7.27090 -7.04910 -4.78082 1.20831 1.77803 2.37440 2.56443 2.75536 2.82251 2.86161 2.90807 3.13313 3.27741 3.39090 3.59594 3.68645 4.26880 4.58604 5.02439 5.51550 5.88613 6.05112 6.35157 6.46693 6.59377 6.61084 6.78929 7.08446 7.24368 7.36505 7.49117 7.99245 8.05164 8.23591 8.26994 9.62410 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.009292 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.254961 B = 3012.746663 C = 4539.205438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.276 3.724 3 C 0.073 3.927 4 C -0.182 4.182 5 C -0.077 4.077 6 C -0.253 4.253 7 S 0.020 5.980 8 C -0.056 4.056 9 C -0.142 4.142 10 C 0.141 3.859 11 C -0.399 4.399 12 H 0.103 0.897 13 C 0.070 3.930 14 N -0.755 5.755 15 Si 0.920 3.080 16 H -0.262 1.262 17 H -0.271 1.271 18 H -0.255 1.255 19 C -0.134 4.134 20 S -0.147 6.147 21 H 0.120 0.880 22 H 0.150 0.850 23 H 0.131 0.869 24 H 0.293 0.707 25 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.906 -2.417 0.239 3.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.038 4.038 3 C 0.065 3.935 4 C -0.191 4.191 5 C -0.107 4.107 6 C -0.386 4.386 7 S 0.280 5.720 8 C -0.171 4.171 9 C -0.170 4.170 10 C 0.131 3.869 11 C -0.427 4.427 12 H 0.121 0.879 13 C -0.154 4.154 14 N -0.376 5.376 15 Si 0.743 3.257 16 H -0.187 1.187 17 H -0.196 1.196 18 H -0.179 1.179 19 C -0.251 4.251 20 S 0.011 5.989 21 H 0.137 0.863 22 H 0.167 0.833 23 H 0.149 0.851 24 H 0.105 0.895 25 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.232 -2.069 0.441 2.448 hybrid contribution 0.055 -0.673 -0.645 0.934 sum 1.287 -2.742 -0.204 3.036 Atomic orbital electron populations 1.81066 1.12080 1.09488 1.09112 1.25743 0.92776 0.92867 0.92463 1.17031 0.82466 0.99148 0.94902 1.18211 0.91464 1.11975 0.97486 1.19613 0.99338 0.98233 0.93487 1.24566 0.95338 1.13320 1.05421 1.83832 1.08059 1.61681 1.18433 1.22203 0.94920 1.01887 0.98139 1.20517 0.99688 1.02538 0.94251 1.18282 0.87576 0.88923 0.92140 1.19884 0.97138 1.27808 0.97835 0.87932 1.26163 0.98577 0.93179 0.97504 1.69828 1.19271 1.26806 1.21737 0.86066 0.78487 0.80314 0.80841 1.18655 1.19585 1.17866 1.22224 0.95423 1.10082 0.97364 1.86487 1.73071 1.19101 1.20227 0.86251 0.83264 0.85106 0.89522 0.95739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.11 18.54 41.84 0.78 -8.34 15 2 C 0.28 5.66 13.92 -22.47 -0.31 5.35 15 3 C 0.07 1.56 5.96 -103.84 -0.62 0.94 15 4 C -0.18 -3.83 6.02 -104.67 -0.63 -4.46 15 5 C -0.08 -1.44 9.74 -40.76 -0.40 -1.83 15 6 C -0.25 -4.37 11.10 28.83 0.32 -4.05 15 7 S 0.02 0.36 23.30 -107.50 -2.50 -2.14 15 8 C -0.06 -1.21 6.43 -38.62 -0.25 -1.46 15 9 C -0.14 -3.21 8.64 -38.66 -0.33 -3.54 15 10 C 0.14 3.21 5.69 -105.03 -0.60 2.61 15 11 C -0.40 -8.79 8.50 -38.01 -0.32 -9.12 15 12 H 0.10 2.16 7.13 -52.49 -0.37 1.79 15 13 C 0.07 1.45 5.12 -17.32 -0.09 1.36 15 14 N -0.75 -16.41 11.02 55.55 0.61 -15.80 15 15 Si 0.92 15.67 29.59 -169.99 -5.03 10.64 15 16 H -0.26 -4.47 7.11 56.52 0.40 -4.07 15 17 H -0.27 -4.54 7.11 56.52 0.40 -4.14 15 18 H -0.26 -4.33 7.11 56.52 0.40 -3.93 15 19 C -0.13 -2.92 6.35 -35.99 -0.23 -3.15 15 20 S -0.15 -2.89 23.47 -107.50 -2.52 -5.42 15 21 H 0.12 2.05 7.98 -52.49 -0.42 1.63 15 22 H 0.15 2.11 8.06 -52.49 -0.42 1.69 15 23 H 0.13 3.01 6.18 -52.49 -0.32 2.69 15 24 H 0.29 5.72 8.30 -40.82 -0.34 5.39 15 25 H 0.08 1.40 9.55 96.90 0.93 2.32 15 LS Contribution 261.90 15.07 3.95 3.95 Total: -1.00 -23.14 261.90 -7.93 -31.07 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: 0.25 Total: 3.38 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -3.46 Total: -17.35 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 1.39 Total: -24.14 kcal Atomic # 14 Polarization: 15.67 SS G_CDS: -5.03 Total: 10.64 kcal Atomic # 16 Polarization: -2.53 SS G_CDS: -5.03 Total: -7.56 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -23.14 -7.93 -31.07 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227146.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.860 kcal (2) G-P(sol) polarization free energy of solvation -23.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds