Wall clock time and date at job start Mon Mar 30 2020 07:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.47462 * 120.11614 * 299.54500 * 3 2 1 5 5 C 1.40162 * 128.36035 * 0.02562 * 4 3 2 6 6 C 1.32608 * 115.92214 * 180.02562 * 5 4 3 7 7 S 1.75454 * 110.76863 * 0.02562 * 6 5 4 8 8 C 1.40219 * 119.13007 * 180.02562 * 4 3 2 9 9 C 1.38837 * 120.90511 * 359.72036 * 8 4 3 10 10 C 1.40094 * 121.34814 * 0.56589 * 9 8 4 11 11 C 1.40758 * 120.16285 * 179.71457 * 10 9 8 12 12 H 1.08000 * 120.00344 * 153.75136 * 11 10 9 13 13 C 1.39897 * 120.00039 * 333.47181 * 11 10 9 14 14 N 1.30917 * 119.99937 * 343.07205 * 13 11 10 15 15 Si 1.86797 * 120.00253 * 163.07299 * 13 11 10 16 16 H 1.48496 * 109.47446 * 89.99772 * 15 13 11 17 17 H 1.48499 * 109.47266 * 210.00075 * 15 13 11 18 18 H 1.48504 * 109.47076 * 329.99735 * 15 13 11 19 19 C 1.39249 * 120.11630 * 119.56596 * 3 2 1 20 20 S 1.76193 * 120.41619 * 359.97438 * 19 3 2 21 21 H 1.07998 * 122.04238 * 359.97438 * 5 4 3 22 22 H 1.07993 * 124.61421 * 179.97438 * 6 5 4 23 23 H 1.07998 * 119.32715 * 180.28653 * 9 8 4 24 24 H 0.96997 * 120.00484 * 179.97438 * 14 13 11 25 25 H 1.40997 * 100.00104 * 269.97542 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3082 -0.6280 1.1097 5 6 2.7943 -1.2716 2.2438 6 6 3.6913 -1.7523 3.0939 7 16 5.3204 -1.4287 2.5285 8 6 4.7102 -0.6150 1.0890 9 6 5.4024 -0.0259 0.0395 10 6 4.7287 0.5846 -1.0264 11 6 5.4557 1.1796 -2.0746 12 1 5.0149 1.2653 -3.0568 13 6 6.7469 1.6653 -1.8427 14 7 7.1571 1.8752 -0.6172 15 14 7.8860 2.0145 -3.2814 16 1 7.7054 3.4197 -3.7261 17 1 9.2945 1.8059 -2.8597 18 1 7.5636 1.0953 -4.4024 19 6 3.2665 0.5953 -1.0477 20 16 2.3994 1.3512 -2.3823 21 1 1.7325 -1.3694 2.4153 22 1 3.4517 -2.2715 4.0101 23 1 6.4823 -0.0346 0.0472 24 1 8.0525 2.2116 -0.4563 25 1 2.2805 0.2485 -3.2529 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396227146.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:01 Heat of formation + Delta-G solvation = 57.477590 kcal Electronic energy + Delta-G solvation = -14084.063046 eV Core-core repulsion = 11665.625770 eV Total energy + Delta-G solvation = -2418.437276 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -39.91583 -37.50604 -36.81811 -34.66330 -31.88990 -30.80550 -27.17854 -24.56489 -24.19910 -21.44743 -20.77189 -18.48101 -18.17328 -17.40171 -16.83912 -16.61809 -15.95705 -15.11892 -15.02099 -14.64999 -14.19923 -14.05072 -13.94171 -13.70027 -13.32336 -13.14743 -12.83412 -12.50928 -12.30991 -12.00411 -11.89920 -11.54126 -11.31696 -10.90113 -10.28849 -9.25647 -8.90590 -8.82697 -8.59770 -6.42466 -0.38329 0.17493 0.81266 0.99770 1.32119 1.35111 1.46041 1.58862 1.62232 1.67222 1.83913 2.06091 2.19202 2.67453 2.94229 3.37292 4.05731 4.39390 4.56174 4.76919 4.86325 5.00964 5.07888 5.20802 5.54046 5.65011 5.75500 5.81979 6.34379 6.41690 6.61398 6.63719 8.10508 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.009292 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.254961 B = 3012.746663 C = 4539.205438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.284 3.716 3 C 0.062 3.938 4 C -0.186 4.186 5 C -0.099 4.099 6 C -0.227 4.227 7 S 0.044 5.956 8 C -0.082 4.082 9 C -0.158 4.158 10 C 0.118 3.882 11 C -0.424 4.424 12 H 0.105 0.895 13 C 0.038 3.962 14 N -0.787 5.787 15 Si 0.985 3.015 16 H -0.260 1.260 17 H -0.265 1.265 18 H -0.254 1.254 19 C -0.148 4.148 20 S -0.145 6.145 21 H 0.137 0.863 22 H 0.189 0.811 23 H 0.119 0.881 24 H 0.301 0.699 25 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.878 -3.050 0.756 3.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.030 4.030 3 C 0.054 3.946 4 C -0.196 4.196 5 C -0.128 4.128 6 C -0.360 4.360 7 S 0.304 5.696 8 C -0.197 4.197 9 C -0.186 4.186 10 C 0.109 3.891 11 C -0.452 4.452 12 H 0.123 0.877 13 C -0.182 4.182 14 N -0.409 5.409 15 Si 0.805 3.195 16 H -0.184 1.184 17 H -0.189 1.189 18 H -0.177 1.177 19 C -0.265 4.265 20 S 0.013 5.987 21 H 0.154 0.846 22 H 0.206 0.794 23 H 0.137 0.863 24 H 0.112 0.888 25 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.198 -2.706 0.967 3.113 hybrid contribution 0.017 -0.565 -0.662 0.871 sum 1.215 -3.271 0.304 3.503 Atomic orbital electron populations 1.81066 1.11974 1.09709 1.09293 1.25568 0.92476 0.92677 0.92295 1.17114 0.82782 0.99592 0.95137 1.18570 0.91455 1.11540 0.98036 1.19751 1.00596 0.99250 0.93248 1.25085 0.94126 1.11015 1.05800 1.83767 1.08747 1.60520 1.16555 1.22505 0.95600 1.02376 0.99210 1.20465 0.99212 1.03651 0.95249 1.18555 0.88304 0.89518 0.92745 1.20078 0.98257 1.28965 0.97859 0.87715 1.26898 0.99295 0.92398 0.99640 1.69858 1.20030 1.27645 1.23405 0.85112 0.76682 0.79980 0.77724 1.18421 1.18940 1.17709 1.22383 0.95445 1.10328 0.98323 1.86335 1.72428 1.19860 1.20107 0.84582 0.79357 0.86292 0.88810 0.94009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -17.83 18.54 19.00 0.35 -17.47 15 2 C 0.28 11.44 13.92 88.33 1.23 12.67 15 3 C 0.06 2.65 5.96 -19.36 -0.12 2.53 15 4 C -0.19 -7.71 6.02 -19.90 -0.12 -7.83 15 5 C -0.10 -3.48 9.74 21.58 0.21 -3.27 15 6 C -0.23 -7.07 11.10 66.66 0.74 -6.33 15 7 S 0.04 1.53 23.30 -56.49 -1.32 0.21 15 8 C -0.08 -3.50 6.43 22.89 0.15 -3.35 15 9 C -0.16 -7.30 8.64 22.86 0.20 -7.11 15 10 C 0.12 5.53 5.69 -20.13 -0.11 5.41 15 11 C -0.42 -19.06 8.50 23.29 0.20 -18.86 15 12 H 0.10 4.48 7.13 -2.91 -0.02 4.46 15 13 C 0.04 1.62 5.12 85.23 0.44 2.05 15 14 N -0.79 -34.87 11.02 21.82 0.24 -34.63 15 15 Si 0.99 31.94 29.59 68.60 2.03 33.97 15 16 H -0.26 -8.27 7.11 99.48 0.71 -7.56 15 17 H -0.27 -8.24 7.11 99.48 0.71 -7.53 15 18 H -0.25 -8.07 7.11 99.48 0.71 -7.36 15 19 C -0.15 -6.52 6.35 24.60 0.16 -6.36 15 20 S -0.15 -5.68 23.47 -56.49 -1.33 -7.01 15 21 H 0.14 4.31 7.98 -2.91 -0.02 4.29 15 22 H 0.19 4.37 8.06 -2.91 -0.02 4.35 15 23 H 0.12 5.68 6.18 -2.91 -0.02 5.66 15 24 H 0.30 11.88 8.30 -92.71 -0.77 11.11 15 25 H 0.10 3.35 9.55 73.80 0.70 4.05 15 Total: -1.00 -48.82 261.90 4.92 -43.90 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 1.97 Total: 11.47 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: 2.97 Total: -30.45 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.59 Total: -52.10 kcal Atomic # 14 Polarization: 31.94 SS G_CDS: 2.03 Total: 33.97 kcal Atomic # 16 Polarization: -4.15 SS G_CDS: -2.64 Total: -6.79 kcal Total: -48.82 4.92 -43.90 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227146.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.377 kcal (2) G-P(sol) polarization free energy of solvation -48.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds