Wall clock time and date at job start Mon Mar 30 2020 07:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 S 1.75176 * 124.63581 * 261.35482 * 3 2 1 5 5 C 1.75861 * 92.82504 * 179.97438 * 4 3 2 6 6 C 1.39862 * 129.58686 * 179.45873 * 5 4 3 7 7 C 1.38372 * 120.27514 * 179.97438 * 6 5 4 8 8 S 1.76202 * 120.02916 * 179.97438 * 7 6 5 9 9 C 1.39436 * 119.94229 * 0.02562 * 7 6 5 10 10 C 1.36100 * 120.31029 * 0.02562 * 9 7 6 11 11 C 1.39410 * 110.82112 * 359.69612 * 5 4 3 12 12 C 1.38717 * 124.63154 * 80.79479 * 3 2 1 13 13 C 1.39702 * 123.34354 * 359.97438 * 12 3 2 14 14 H 1.08009 * 119.99570 * 38.01330 * 13 12 3 15 15 C 1.40369 * 120.00194 * 218.01835 * 13 12 3 16 16 N 1.30633 * 120.00228 * 19.80543 * 15 13 12 17 17 Si 1.86800 * 119.99729 * 199.80820 * 15 13 12 18 18 H 1.48493 * 109.47496 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47263 * 119.99895 * 17 15 13 20 20 H 1.48501 * 109.46927 * 239.99834 * 17 15 13 21 21 H 1.08001 * 119.86323 * 359.95481 * 6 5 4 22 22 H 1.34504 * 103.00076 * 270.01972 * 8 7 6 23 23 H 1.07991 * 119.84364 * 180.02562 * 9 7 6 24 24 H 1.08001 * 119.64783 * 179.97438 * 10 9 7 25 25 H 0.96999 * 120.00232 * 183.31729 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5635 0.2177 1.4249 5 6 5.0581 0.0783 0.5086 6 6 6.3836 0.1556 0.9482 7 6 7.4260 0.0161 0.0490 8 16 9.0935 0.1153 0.6097 9 6 7.1558 -0.2021 -1.3014 10 6 5.8700 -0.2782 -1.7411 11 6 4.7924 -0.1346 -0.8433 12 6 3.3564 -0.1816 -1.1267 13 6 2.8326 -0.3895 -2.4050 14 1 1.9465 0.1425 -2.7185 15 6 3.4579 -1.2898 -3.2818 16 7 4.2648 -2.2041 -2.8134 17 14 3.1361 -1.1805 -5.1187 18 1 2.1911 -0.0678 -5.3903 19 1 4.4147 -0.9297 -5.8311 20 1 2.5463 -2.4575 -5.5947 21 1 6.5944 0.3253 1.9937 22 1 9.3728 1.4263 0.4978 23 1 7.9705 -0.3112 -2.0017 24 1 5.6729 -0.4471 -2.7894 25 1 4.7341 -2.7952 -3.4227 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396227738.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:24 Heat of formation + Delta-G solvation = 57.761827 kcal Electronic energy + Delta-G solvation = -14139.439822 eV Core-core repulsion = 11721.014872 eV Total energy + Delta-G solvation = -2418.424950 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -38.83735 -35.80508 -34.71637 -32.91417 -30.39878 -29.08113 -26.72914 -23.14002 -22.36674 -20.54565 -18.49114 -17.75939 -16.49647 -16.01348 -15.43491 -14.83229 -14.49022 -13.86866 -13.32351 -13.31480 -13.04755 -12.45605 -12.12951 -12.00115 -11.76618 -11.55134 -11.48096 -11.11782 -10.85631 -10.50701 -10.28495 -9.92158 -9.73744 -9.40521 -8.82852 -8.00709 -7.70412 -7.41148 -6.92766 -4.90550 1.06522 1.85796 1.88001 2.40240 2.54020 2.83167 2.87925 2.90640 3.05206 3.17539 3.59329 4.15560 4.28562 4.32315 4.86755 5.30702 5.38574 5.63243 5.85875 5.98803 6.20383 6.36833 6.55884 6.66259 6.76735 6.95148 7.32109 7.35090 7.81191 8.06555 8.22618 8.86424 9.57902 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.009089 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.820680 B = 3079.782819 C = 4607.824780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C 0.331 3.669 3 C -0.334 4.334 4 S 0.051 5.949 5 C -0.123 4.123 6 C -0.051 4.051 7 C -0.099 4.099 8 S -0.140 6.140 9 C -0.108 4.108 10 C -0.040 4.040 11 C -0.019 4.019 12 C 0.169 3.831 13 C -0.416 4.416 14 H 0.097 0.903 15 C 0.078 3.922 16 N -0.752 5.752 17 Si 0.910 3.090 18 H -0.254 1.254 19 H -0.263 1.263 20 H -0.267 1.267 21 H 0.127 0.873 22 H 0.068 0.932 23 H 0.125 0.875 24 H 0.129 0.871 25 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.279 2.157 -0.278 9.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C 0.022 3.978 3 C -0.453 4.453 4 S 0.311 5.689 5 C -0.241 4.241 6 C -0.077 4.077 7 C -0.213 4.213 8 S 0.017 5.983 9 C -0.132 4.132 10 C -0.061 4.061 11 C -0.029 4.029 12 C 0.157 3.843 13 C -0.447 4.447 14 H 0.115 0.885 15 C -0.147 4.147 16 N -0.374 5.374 17 Si 0.732 3.268 18 H -0.177 1.177 19 H -0.188 1.188 20 H -0.192 1.192 21 H 0.145 0.855 22 H 0.032 0.968 23 H 0.143 0.857 24 H 0.147 0.853 25 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.088 1.978 1.537 8.467 hybrid contribution -0.116 0.588 -2.683 2.750 sum 7.973 2.566 -1.146 8.454 Atomic orbital electron populations 1.81051 1.11867 1.17494 1.09164 1.24286 0.90931 0.90618 0.91978 1.18692 0.87666 1.43683 0.95307 1.82990 0.93456 1.82933 1.09550 1.22580 0.97007 1.06951 0.97535 1.20785 0.89272 0.98869 0.98803 1.20763 0.93466 1.10961 0.96123 1.85762 1.12581 1.12556 1.87380 1.20868 0.96914 1.01503 0.93935 1.20817 0.90215 0.95061 1.00010 1.19522 0.94291 0.97614 0.91442 1.17367 0.87571 0.87413 0.91920 1.19318 1.10724 1.18742 0.95889 0.88550 1.26108 0.93159 0.93119 1.02330 1.69765 1.18457 1.10153 1.39045 0.86187 0.80166 0.80193 0.80266 1.17667 1.18784 1.19196 0.85502 0.96807 0.85693 0.85324 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.76 18.54 41.84 0.78 -11.98 15 2 C 0.33 8.04 15.20 -22.47 -0.34 7.70 15 3 C -0.33 -7.80 6.31 -37.48 -0.24 -8.03 15 4 S 0.05 1.03 23.12 -107.50 -2.49 -1.46 15 5 C -0.12 -2.46 6.41 -38.54 -0.25 -2.71 15 6 C -0.05 -0.89 9.81 -38.92 -0.38 -1.27 15 7 C -0.10 -1.64 6.11 -39.09 -0.24 -1.87 15 8 S -0.14 -1.93 25.77 -107.50 -2.77 -4.70 15 9 C -0.11 -1.83 9.71 -39.90 -0.39 -2.22 15 10 C -0.04 -0.77 8.33 -39.31 -0.33 -1.09 15 11 C -0.02 -0.41 5.55 -105.12 -0.58 -0.99 15 12 C 0.17 3.97 5.41 -105.87 -0.57 3.40 15 13 C -0.42 -9.66 8.51 -38.23 -0.33 -9.99 15 14 H 0.10 2.27 7.91 -52.48 -0.41 1.85 15 15 C 0.08 1.64 4.03 -17.26 -0.07 1.57 15 16 N -0.75 -16.18 10.73 55.57 0.60 -15.59 15 17 Si 0.91 15.94 29.61 -169.99 -5.03 10.90 15 18 H -0.25 -4.54 7.11 56.52 0.40 -4.14 15 19 H -0.26 -4.38 7.11 56.52 0.40 -3.98 15 20 H -0.27 -4.72 7.11 56.52 0.40 -4.32 15 21 H 0.13 1.92 8.06 -52.49 -0.42 1.50 15 22 H 0.07 0.85 9.07 97.61 0.89 1.74 15 23 H 0.13 1.80 8.06 -52.49 -0.42 1.38 15 24 H 0.13 2.47 5.92 -52.49 -0.31 2.15 15 25 H 0.30 5.64 8.29 -40.82 -0.34 5.31 15 LS Contribution 261.78 15.07 3.94 3.94 Total: -1.00 -24.39 261.78 -8.50 -32.89 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: 0.18 Total: 1.49 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -3.71 Total: -15.50 kcal Atomic # 7 Polarization: -28.94 SS G_CDS: 1.37 Total: -27.57 kcal Atomic # 14 Polarization: 15.94 SS G_CDS: -5.03 Total: 10.90 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -5.26 Total: -6.16 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -24.39 -8.50 -32.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227738.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.656 kcal (2) G-P(sol) polarization free energy of solvation -24.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds