Wall clock time and date at job start Mon Mar 30 2020 07:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 S 1.75176 * 124.63581 * 261.35482 * 3 2 1 5 5 C 1.75861 * 92.82504 * 179.97438 * 4 3 2 6 6 C 1.39862 * 129.58686 * 179.45873 * 5 4 3 7 7 C 1.38372 * 120.27514 * 179.97438 * 6 5 4 8 8 S 1.76202 * 120.02916 * 179.97438 * 7 6 5 9 9 C 1.39436 * 119.94229 * 0.02562 * 7 6 5 10 10 C 1.36100 * 120.31029 * 0.02562 * 9 7 6 11 11 C 1.39410 * 110.82112 * 359.69612 * 5 4 3 12 12 C 1.38717 * 124.63154 * 80.79479 * 3 2 1 13 13 C 1.39702 * 123.34354 * 359.97438 * 12 3 2 14 14 H 1.08009 * 119.99570 * 38.01330 * 13 12 3 15 15 C 1.40369 * 120.00194 * 218.01835 * 13 12 3 16 16 N 1.30633 * 120.00228 * 19.80543 * 15 13 12 17 17 Si 1.86800 * 119.99729 * 199.80820 * 15 13 12 18 18 H 1.48493 * 109.47496 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47263 * 119.99895 * 17 15 13 20 20 H 1.48501 * 109.46927 * 239.99834 * 17 15 13 21 21 H 1.08001 * 119.86323 * 359.95481 * 6 5 4 22 22 H 1.34504 * 103.00076 * 270.01972 * 8 7 6 23 23 H 1.07991 * 119.84364 * 180.02562 * 9 7 6 24 24 H 1.08001 * 119.64783 * 179.97438 * 10 9 7 25 25 H 0.96999 * 120.00232 * 183.31729 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5635 0.2177 1.4249 5 6 5.0581 0.0783 0.5086 6 6 6.3836 0.1556 0.9482 7 6 7.4260 0.0161 0.0490 8 16 9.0935 0.1153 0.6097 9 6 7.1558 -0.2021 -1.3014 10 6 5.8700 -0.2782 -1.7411 11 6 4.7924 -0.1346 -0.8433 12 6 3.3564 -0.1816 -1.1267 13 6 2.8326 -0.3895 -2.4050 14 1 1.9465 0.1425 -2.7185 15 6 3.4579 -1.2898 -3.2818 16 7 4.2648 -2.2041 -2.8134 17 14 3.1361 -1.1805 -5.1187 18 1 2.1911 -0.0678 -5.3903 19 1 4.4147 -0.9297 -5.8311 20 1 2.5463 -2.4575 -5.5947 21 1 6.5944 0.3253 1.9937 22 1 9.3728 1.4263 0.4978 23 1 7.9705 -0.3112 -2.0017 24 1 5.6729 -0.4471 -2.7894 25 1 4.7341 -2.7952 -3.4227 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396227738.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:24 Heat of formation + Delta-G solvation = 47.128600 kcal Electronic energy + Delta-G solvation = -14139.900914 eV Core-core repulsion = 11721.014872 eV Total energy + Delta-G solvation = -2418.886042 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.31828 -37.54718 -36.45853 -34.54187 -31.83051 -30.62388 -28.45160 -24.69705 -23.81762 -22.13907 -20.06090 -19.08810 -18.09975 -17.46056 -16.92504 -16.31856 -15.93873 -15.38914 -14.90695 -14.78208 -14.62786 -14.05881 -13.78614 -13.57074 -13.51513 -13.13507 -12.95282 -12.66661 -12.33063 -11.94227 -11.78795 -11.39654 -11.25639 -10.97247 -10.32021 -9.27515 -9.08881 -9.02465 -8.50815 -6.64345 -0.41124 0.43195 0.60255 0.87230 1.04071 1.34408 1.42149 1.49300 1.53938 1.95333 2.13176 2.42136 2.46543 2.71538 3.15398 3.66217 3.99039 4.24724 4.36444 4.51700 4.71098 4.92174 4.97919 5.19457 5.28175 5.46075 5.70122 5.88573 6.06999 6.34395 6.51752 6.98239 7.99013 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.009089 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.820680 B = 3079.782819 C = 4607.824780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C 0.330 3.670 3 C -0.372 4.372 4 S 0.070 5.930 5 C -0.133 4.133 6 C -0.052 4.052 7 C -0.098 4.098 8 S -0.114 6.114 9 C -0.099 4.099 10 C -0.050 4.050 11 C -0.049 4.049 12 C 0.155 3.845 13 C -0.441 4.441 14 H 0.080 0.920 15 C 0.054 3.946 16 N -0.767 5.767 17 Si 0.973 3.027 18 H -0.265 1.265 19 H -0.241 1.241 20 H -0.266 1.266 21 H 0.151 0.849 22 H 0.084 0.916 23 H 0.155 0.845 24 H 0.126 0.874 25 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.081 2.027 -0.927 12.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.222 5.222 2 C 0.023 3.977 3 C -0.492 4.492 4 S 0.328 5.672 5 C -0.250 4.250 6 C -0.078 4.078 7 C -0.212 4.212 8 S 0.043 5.957 9 C -0.123 4.123 10 C -0.072 4.072 11 C -0.058 4.058 12 C 0.143 3.857 13 C -0.471 4.471 14 H 0.098 0.902 15 C -0.171 4.171 16 N -0.389 5.389 17 Si 0.792 3.208 18 H -0.188 1.188 19 H -0.164 1.164 20 H -0.190 1.190 21 H 0.168 0.832 22 H 0.048 0.952 23 H 0.172 0.828 24 H 0.144 0.856 25 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.901 1.844 0.902 11.093 hybrid contribution -0.804 0.608 -2.481 2.678 sum 10.097 2.452 -1.580 10.509 Atomic orbital electron populations 1.81006 1.12356 1.18952 1.09929 1.24637 0.91403 0.90234 0.91431 1.19020 0.87449 1.45469 0.97253 1.82668 0.93091 1.83389 1.08004 1.22777 0.97892 1.07335 0.97027 1.21094 0.88269 0.98224 1.00232 1.21061 0.95315 1.08924 0.95875 1.85727 1.09349 1.13676 1.86984 1.21201 0.96636 0.99645 0.94781 1.20867 0.90771 0.95857 0.99670 1.19573 0.93710 0.99823 0.92716 1.17726 0.89063 0.86948 0.91972 1.19480 1.10932 1.19731 0.96970 0.90156 1.26712 0.92581 0.92092 1.05667 1.69745 1.18220 1.10055 1.40891 0.85271 0.80637 0.79555 0.75315 1.18846 1.16387 1.19033 0.83167 0.95155 0.82786 0.85644 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -27.80 18.54 19.00 0.35 -27.44 15 2 C 0.33 16.74 15.20 88.33 1.34 18.08 15 3 C -0.37 -18.01 6.31 23.63 0.15 -17.86 15 4 S 0.07 2.83 23.12 -56.49 -1.31 1.52 15 5 C -0.13 -5.24 6.41 22.95 0.15 -5.09 15 6 C -0.05 -1.70 9.81 22.70 0.22 -1.47 15 7 C -0.10 -2.92 6.11 22.59 0.14 -2.78 15 8 S -0.11 -2.69 25.77 -56.49 -1.46 -4.15 15 9 C -0.10 -3.07 9.71 22.06 0.21 -2.86 15 10 C -0.05 -1.88 8.33 22.45 0.19 -1.70 15 11 C -0.05 -2.11 5.55 -20.18 -0.11 -2.22 15 12 C 0.16 7.48 5.41 -20.67 -0.11 7.37 15 13 C -0.44 -21.09 8.51 23.14 0.20 -20.89 15 14 H 0.08 3.98 7.91 -2.91 -0.02 3.95 15 15 C 0.05 2.25 4.03 85.39 0.34 2.60 15 16 N -0.77 -32.54 10.73 21.90 0.24 -32.30 15 17 Si 0.97 32.01 29.61 68.60 2.03 34.04 15 18 H -0.26 -9.12 7.11 99.48 0.71 -8.41 15 19 H -0.24 -7.03 7.11 99.48 0.71 -6.33 15 20 H -0.27 -8.66 7.11 99.48 0.71 -7.95 15 21 H 0.15 4.10 8.06 -2.91 -0.02 4.08 15 22 H 0.08 1.74 9.07 73.35 0.67 2.41 15 23 H 0.15 3.83 8.06 -2.92 -0.02 3.80 15 24 H 0.13 4.68 5.92 -2.91 -0.02 4.67 15 25 H 0.31 11.36 8.29 -92.71 -0.77 10.59 15 Total: -1.00 -52.85 261.78 4.50 -48.34 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.93 Total: 6.81 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 2.72 Total: -26.82 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.59 Total: -59.75 kcal Atomic # 14 Polarization: 32.01 SS G_CDS: 2.03 Total: 34.04 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.76 Total: -2.62 kcal Total: -52.85 4.50 -48.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227738.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.470 kcal (2) G-P(sol) polarization free energy of solvation -52.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds