Wall clock time and date at job start Mon Mar 30 2020 07:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.33905 * 122.87549 * 276.82231 * 3 2 1 5 5 S 1.75207 * 111.21776 * 180.02562 * 4 3 2 6 6 C 1.76010 * 92.49402 * 0.02562 * 5 4 3 7 7 C 1.40862 * 129.82113 * 180.02562 * 6 5 4 8 8 C 1.35563 * 121.16332 * 179.97438 * 7 6 5 9 9 C 1.41041 * 120.13344 * 359.95747 * 8 7 6 10 10 C 1.40869 * 120.19212 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99997 * 205.99225 * 10 9 8 12 12 C 1.39744 * 120.00173 * 25.99259 * 10 9 8 13 13 N 1.31019 * 119.99901 * 16.93348 * 12 10 9 14 14 Si 1.86796 * 120.00166 * 196.93162 * 12 10 9 15 15 H 1.48498 * 109.47426 * 265.19414 * 14 12 10 16 16 H 1.48498 * 109.47011 * 25.19506 * 14 12 10 17 17 H 1.48504 * 109.47294 * 145.19785 * 14 12 10 18 18 C 1.41028 * 119.61558 * 0.27308 * 9 8 7 19 19 S 1.76202 * 120.09302 * 179.75220 * 18 9 8 20 20 C 1.39283 * 110.00912 * 359.97438 * 6 5 4 21 21 H 1.07997 * 124.39218 * 0.04214 * 4 3 2 22 22 H 1.08000 * 119.41916 * 359.95740 * 7 6 5 23 23 H 1.08003 * 119.93375 * 179.97438 * 8 7 6 24 24 H 0.96996 * 119.99799 * 180.02562 * 13 12 10 25 25 H 1.40997 * 100.00363 * 89.99851 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2950 -0.1326 1.1166 5 16 5.0109 -0.0891 0.7652 6 6 4.7305 0.1183 -0.9600 7 6 5.6549 0.2455 -2.0153 8 6 5.2399 0.3989 -3.2967 9 6 3.8619 0.4330 -3.5954 10 6 3.4293 0.5929 -4.9265 11 1 2.4628 1.0291 -5.1315 12 6 4.2507 0.1872 -5.9817 13 7 5.2517 -0.6277 -5.7567 14 14 3.9217 0.8066 -7.7130 15 1 3.0891 -0.1829 -8.4429 16 1 3.2033 2.1045 -7.6461 17 1 5.2111 0.9906 -8.4263 18 6 2.9196 0.3123 -2.5531 19 16 1.1950 0.3598 -2.9113 20 6 3.3625 0.1480 -1.2203 21 1 2.8777 -0.2518 2.1056 22 1 6.7128 0.2206 -1.7997 23 1 5.9659 0.4950 -4.0904 24 1 5.8220 -0.9091 -6.4891 25 1 0.9513 -1.0125 -3.1244 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396228325.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:53 Heat of formation + Delta-G solvation = 63.616812 kcal Electronic energy + Delta-G solvation = -14128.252240 eV Core-core repulsion = 11710.081181 eV Total energy + Delta-G solvation = -2418.171059 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -38.46550 -36.30659 -34.75290 -33.15574 -30.26247 -28.65091 -25.90008 -23.77633 -21.77183 -20.85507 -18.18194 -17.21859 -16.37581 -15.77455 -15.56050 -14.53901 -14.19872 -13.75298 -13.60882 -12.89697 -12.75652 -12.62892 -12.23401 -11.93457 -11.66597 -11.43501 -11.27836 -11.02715 -10.92299 -10.48232 -10.31312 -10.09502 -9.54452 -9.39038 -8.51281 -7.72001 -7.31025 -7.02447 -6.84282 -4.78615 1.17074 2.08239 2.21051 2.52145 2.57559 2.90250 2.90405 2.99205 3.11799 3.39142 3.66941 3.82204 3.99879 4.26199 4.77394 5.13299 5.21471 5.90995 6.01647 6.16673 6.47285 6.68154 6.77668 7.01166 7.06985 7.28655 7.55369 7.72075 8.16546 8.18962 8.39937 8.46041 9.70918 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.024418 B = 0.007848 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.410300 B = 3566.762960 C = 4627.441137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.290 3.710 3 C -0.034 4.034 4 C -0.153 4.153 5 S 0.082 5.918 6 C -0.234 4.234 7 C -0.067 4.067 8 C -0.109 4.109 9 C 0.147 3.853 10 C -0.418 4.418 11 H 0.106 0.894 12 C 0.071 3.929 13 N -0.774 5.774 14 Si 0.918 3.082 15 H -0.266 1.266 16 H -0.253 1.253 17 H -0.272 1.272 18 C -0.224 4.224 19 S -0.161 6.161 20 C 0.032 3.968 21 H 0.165 0.835 22 H 0.103 0.897 23 H 0.133 0.867 24 H 0.290 0.710 25 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.382 0.673 4.447 5.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.028 4.028 3 C -0.053 4.053 4 C -0.293 4.293 5 S 0.346 5.654 6 C -0.350 4.350 7 C -0.089 4.089 8 C -0.131 4.131 9 C 0.140 3.860 10 C -0.445 4.445 11 H 0.124 0.876 12 C -0.150 4.150 13 N -0.397 5.397 14 Si 0.741 3.259 15 H -0.191 1.191 16 H -0.176 1.176 17 H -0.197 1.197 18 C -0.341 4.341 19 S -0.002 6.002 20 C 0.022 3.978 21 H 0.183 0.817 22 H 0.121 0.879 23 H 0.150 0.850 24 H 0.101 0.899 25 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 2.215 0.680 5.059 5.565 hybrid contribution 0.135 -0.814 -1.599 1.800 sum 2.351 -0.135 3.460 4.185 Atomic orbital electron populations 1.81060 1.11843 1.08977 1.09033 1.24815 0.91860 0.93701 0.92381 1.15941 0.85556 1.10306 0.93504 1.25194 0.97665 1.05523 1.00887 1.83427 1.02298 1.77347 1.02341 1.21731 0.95637 1.22373 0.95270 1.19917 0.96477 1.00915 0.91551 1.21147 0.96408 1.00971 0.94587 1.17623 0.90625 0.85439 0.92290 1.20047 1.03560 1.31260 0.89661 0.87593 1.26200 0.93348 0.92553 1.02938 1.69872 1.12956 1.21230 1.35657 0.86089 0.79210 0.80913 0.79642 1.19108 1.17611 1.19660 1.20439 0.92696 1.28364 0.92633 1.86098 1.08314 1.12612 1.93219 1.18489 0.90200 0.97995 0.91165 0.81717 0.87883 0.84973 0.89936 0.97537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.83 18.31 41.84 0.77 -8.07 15 2 C 0.29 5.69 13.02 -22.47 -0.29 5.40 15 3 C -0.03 -0.64 5.81 -106.23 -0.62 -1.26 15 4 C -0.15 -2.37 10.84 29.21 0.32 -2.05 15 5 S 0.08 1.27 23.21 -107.50 -2.50 -1.22 15 6 C -0.23 -4.69 6.47 -38.20 -0.25 -4.93 15 7 C -0.07 -1.35 9.98 -39.55 -0.39 -1.75 15 8 C -0.11 -2.44 8.58 -39.48 -0.34 -2.78 15 9 C 0.15 3.55 5.56 -106.78 -0.59 2.96 15 10 C -0.42 -9.96 8.42 -38.02 -0.32 -10.28 15 11 H 0.11 2.52 6.99 -52.49 -0.37 2.15 15 12 C 0.07 1.57 5.14 -17.34 -0.09 1.48 15 13 N -0.77 -17.39 10.99 55.54 0.61 -16.78 15 14 Si 0.92 16.74 29.59 -169.99 -5.03 11.71 15 15 H -0.27 -4.88 7.11 56.52 0.40 -4.48 15 16 H -0.25 -4.63 7.11 56.52 0.40 -4.23 15 17 H -0.27 -4.79 7.11 56.52 0.40 -4.39 15 18 C -0.22 -5.29 6.25 -37.32 -0.23 -5.53 15 19 S -0.16 -3.64 21.51 -107.50 -2.31 -5.95 15 20 C 0.03 0.68 6.00 -105.04 -0.63 0.05 15 21 H 0.17 1.94 8.06 -52.49 -0.42 1.52 15 22 H 0.10 1.81 8.06 -52.49 -0.42 1.38 15 23 H 0.13 2.96 6.21 -52.48 -0.33 2.63 15 24 H 0.29 5.84 8.30 -40.82 -0.34 5.50 15 25 H 0.06 1.35 9.55 96.90 0.93 2.28 15 LS Contribution 258.17 15.07 3.89 3.89 Total: -1.00 -24.96 258.17 -7.76 -32.72 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: 0.25 Total: 2.38 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -3.44 Total: -18.68 kcal Atomic # 7 Polarization: -26.22 SS G_CDS: 1.38 Total: -24.84 kcal Atomic # 14 Polarization: 16.74 SS G_CDS: -5.03 Total: 11.71 kcal Atomic # 16 Polarization: -2.36 SS G_CDS: -4.81 Total: -7.17 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -24.96 -7.76 -32.72 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396228325.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.335 kcal (2) G-P(sol) polarization free energy of solvation -24.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds