Wall clock time and date at job start Mon Mar 30 2020 07:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.33905 * 122.87549 * 276.82231 * 3 2 1 5 5 S 1.75207 * 111.21776 * 180.02562 * 4 3 2 6 6 C 1.76010 * 92.49402 * 0.02562 * 5 4 3 7 7 C 1.40862 * 129.82113 * 180.02562 * 6 5 4 8 8 C 1.35563 * 121.16332 * 179.97438 * 7 6 5 9 9 C 1.41041 * 120.13344 * 359.95747 * 8 7 6 10 10 C 1.40869 * 120.19212 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99997 * 205.99225 * 10 9 8 12 12 C 1.39744 * 120.00173 * 25.99259 * 10 9 8 13 13 N 1.31019 * 119.99901 * 16.93348 * 12 10 9 14 14 Si 1.86796 * 120.00166 * 196.93162 * 12 10 9 15 15 H 1.48498 * 109.47426 * 265.19414 * 14 12 10 16 16 H 1.48498 * 109.47011 * 25.19506 * 14 12 10 17 17 H 1.48504 * 109.47294 * 145.19785 * 14 12 10 18 18 C 1.41028 * 119.61558 * 0.27308 * 9 8 7 19 19 S 1.76202 * 120.09302 * 179.75220 * 18 9 8 20 20 C 1.39283 * 110.00912 * 359.97438 * 6 5 4 21 21 H 1.07997 * 124.39218 * 0.04214 * 4 3 2 22 22 H 1.08000 * 119.41916 * 359.95740 * 7 6 5 23 23 H 1.08003 * 119.93375 * 179.97438 * 8 7 6 24 24 H 0.96996 * 119.99799 * 180.02562 * 13 12 10 25 25 H 1.40997 * 100.00363 * 89.99851 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2950 -0.1326 1.1166 5 16 5.0109 -0.0891 0.7652 6 6 4.7305 0.1183 -0.9600 7 6 5.6549 0.2455 -2.0153 8 6 5.2399 0.3989 -3.2967 9 6 3.8619 0.4330 -3.5954 10 6 3.4293 0.5929 -4.9265 11 1 2.4628 1.0291 -5.1315 12 6 4.2507 0.1872 -5.9817 13 7 5.2517 -0.6277 -5.7567 14 14 3.9217 0.8066 -7.7130 15 1 3.0891 -0.1829 -8.4429 16 1 3.2033 2.1045 -7.6461 17 1 5.2111 0.9906 -8.4263 18 6 2.9196 0.3123 -2.5531 19 16 1.1950 0.3598 -2.9113 20 6 3.3625 0.1480 -1.2203 21 1 2.8777 -0.2518 2.1056 22 1 6.7128 0.2206 -1.7997 23 1 5.9659 0.4950 -4.0904 24 1 5.8220 -0.9091 -6.4891 25 1 0.9513 -1.0125 -3.1244 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396228325.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:53 Heat of formation + Delta-G solvation = 51.742547 kcal Electronic energy + Delta-G solvation = -14128.767147 eV Core-core repulsion = 11710.081181 eV Total energy + Delta-G solvation = -2418.685966 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.02986 -37.85532 -36.33877 -34.73357 -31.92616 -30.21402 -27.56793 -25.23306 -23.39626 -22.47058 -19.79582 -18.80552 -17.86923 -17.37537 -17.18891 -16.14377 -15.76329 -15.29830 -15.14081 -14.50135 -14.22100 -14.16468 -13.81810 -13.50420 -13.17917 -13.04932 -12.74976 -12.59397 -12.56237 -11.95277 -11.84069 -11.66896 -11.16040 -11.04752 -10.08159 -9.31233 -8.93315 -8.62016 -8.50736 -6.52522 -0.25823 0.54538 0.74874 0.90143 1.07875 1.37904 1.39681 1.45341 1.54755 1.86218 2.06799 2.16318 2.41342 2.67839 3.35335 3.48663 3.84538 4.38964 4.61456 4.68134 4.91568 5.06823 5.16690 5.35633 5.44129 5.63977 5.86121 6.06539 6.43012 6.67529 6.70234 6.74342 8.08967 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.024418 B = 0.007848 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.410300 B = 3566.762960 C = 4627.441137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.300 3.700 3 C -0.076 4.076 4 C -0.117 4.117 5 S 0.172 5.828 6 C -0.260 4.260 7 C -0.058 4.058 8 C -0.134 4.134 9 C 0.125 3.875 10 C -0.450 4.450 11 H 0.094 0.906 12 C 0.041 3.959 13 N -0.797 5.797 14 Si 0.982 3.018 15 H -0.266 1.266 16 H -0.257 1.257 17 H -0.257 1.257 18 C -0.259 4.259 19 S -0.155 6.155 20 C 0.019 3.981 21 H 0.211 0.789 22 H 0.133 0.867 23 H 0.126 0.874 24 H 0.299 0.701 25 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.820 0.615 6.259 7.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.017 4.017 3 C -0.095 4.095 4 C -0.256 4.256 5 S 0.437 5.563 6 C -0.376 4.376 7 C -0.079 4.079 8 C -0.157 4.157 9 C 0.119 3.881 10 C -0.478 4.478 11 H 0.112 0.888 12 C -0.178 4.178 13 N -0.421 5.421 14 Si 0.802 3.198 15 H -0.191 1.191 16 H -0.181 1.181 17 H -0.181 1.181 18 C -0.377 4.377 19 S 0.003 5.997 20 C 0.008 3.992 21 H 0.228 0.772 22 H 0.151 0.849 23 H 0.143 0.857 24 H 0.110 0.890 25 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 3.668 0.616 6.886 7.826 hybrid contribution -0.188 -0.818 -1.927 2.102 sum 3.480 -0.202 4.959 6.062 Atomic orbital electron populations 1.81056 1.12505 1.10468 1.09661 1.24978 0.92065 0.92836 0.91784 1.15876 0.85195 1.14738 0.93667 1.25850 0.97897 1.00136 1.01761 1.83181 1.01000 1.75052 0.97050 1.22190 0.95107 1.21609 0.98734 1.20224 0.98097 0.98646 0.90933 1.21123 0.95635 1.03227 0.95697 1.17954 0.91727 0.85701 0.92747 1.20144 1.03889 1.33054 0.90672 0.88816 1.26858 0.92894 0.92180 1.05880 1.69878 1.13540 1.21586 1.37099 0.85157 0.79450 0.79885 0.75271 1.19079 1.18066 1.18096 1.20722 0.92623 1.30312 0.94013 1.85925 1.08743 1.11629 1.93415 1.18789 0.91613 0.97472 0.91329 0.77211 0.84934 0.85661 0.88983 0.99024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -18.70 18.31 19.00 0.35 -18.35 15 2 C 0.30 11.56 13.02 88.33 1.15 12.71 15 3 C -0.08 -2.72 5.81 -20.91 -0.12 -2.84 15 4 C -0.12 -3.08 10.84 66.83 0.72 -2.36 15 5 S 0.17 4.56 23.21 -56.49 -1.31 3.25 15 6 C -0.26 -9.90 6.47 23.16 0.15 -9.75 15 7 C -0.06 -2.27 9.98 22.29 0.22 -2.05 15 8 C -0.13 -6.15 8.58 22.34 0.19 -5.96 15 9 C 0.13 6.27 5.56 -21.26 -0.12 6.15 15 10 C -0.45 -22.40 8.42 23.28 0.20 -22.20 15 11 H 0.09 4.72 6.99 -2.91 -0.02 4.70 15 12 C 0.04 1.86 5.14 85.18 0.44 2.30 15 13 N -0.80 -36.47 10.99 21.80 0.24 -36.23 15 14 Si 0.98 34.74 29.59 68.60 2.03 36.77 15 15 H -0.27 -9.32 7.11 99.48 0.71 -8.62 15 16 H -0.26 -9.16 7.11 99.48 0.71 -8.45 15 17 H -0.26 -8.40 7.11 99.48 0.71 -7.69 15 18 C -0.26 -12.62 6.25 23.73 0.15 -12.47 15 19 S -0.16 -7.31 21.51 -56.49 -1.22 -8.52 15 20 C 0.02 0.79 6.00 -20.13 -0.12 0.67 15 21 H 0.21 3.62 8.06 -2.91 -0.02 3.59 15 22 H 0.13 4.31 8.06 -2.91 -0.02 4.29 15 23 H 0.13 5.77 6.21 -2.91 -0.02 5.75 15 24 H 0.30 12.13 8.30 -92.71 -0.77 11.36 15 25 H 0.04 2.14 9.55 73.80 0.70 2.84 15 Total: -1.00 -56.04 258.17 4.92 -51.12 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 1.97 Total: 7.76 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 2.86 Total: -35.80 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.59 Total: -54.57 kcal Atomic # 14 Polarization: 34.74 SS G_CDS: 2.03 Total: 36.77 kcal Atomic # 16 Polarization: -2.75 SS G_CDS: -2.53 Total: -5.28 kcal Total: -56.04 4.92 -51.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396228325.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.859 kcal (2) G-P(sol) polarization free energy of solvation -56.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds