Wall clock time and date at job start Mon Mar 30 2020 07:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.42068 * 120.18821 * 104.48592 * 3 2 1 5 5 C 1.45459 * 129.13739 * 359.96241 * 4 3 2 6 6 S 1.76201 * 122.63256 * 0.02562 * 5 4 3 7 7 C 1.32478 * 114.73671 * 180.26918 * 5 4 3 8 8 S 1.75251 * 111.38638 * 359.63185 * 7 5 4 9 9 C 1.39952 * 118.93961 * 179.97438 * 4 3 2 10 10 C 1.40615 * 120.24350 * 0.02562 * 9 4 3 11 11 C 1.35630 * 121.26378 * 359.97438 * 10 9 4 12 12 C 1.41050 * 120.28964 * 0.02562 * 11 10 9 13 13 C 1.40537 * 120.17590 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00126 * 205.29027 * 13 12 11 15 15 C 1.40223 * 120.00247 * 25.28706 * 13 12 11 16 16 N 1.30686 * 119.99829 * 17.52600 * 15 13 12 17 17 Si 1.86796 * 120.00020 * 197.53013 * 15 13 12 18 18 H 1.48500 * 109.46913 * 94.69137 * 17 15 13 19 19 H 1.48499 * 109.47177 * 214.69062 * 17 15 13 20 20 H 1.48503 * 109.47406 * 334.69269 * 17 15 13 21 21 H 1.34503 * 103.00020 * 89.99606 * 6 5 4 22 22 H 1.07996 * 124.30205 * 179.71757 * 7 5 4 23 23 H 1.08000 * 119.37248 * 179.97438 * 10 9 4 24 24 H 1.07995 * 119.85403 * 179.97438 * 11 10 9 25 25 H 0.97001 * 120.00420 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2823 0.3081 -1.1890 5 6 2.7686 0.6476 -2.5068 6 16 1.0448 0.7377 -2.8604 7 6 3.6985 0.8788 -3.4216 8 16 5.3093 0.7123 -2.7517 9 6 4.6815 0.3017 -1.1593 10 6 5.3632 -0.0057 0.0315 11 6 4.6905 -0.3006 1.1717 12 6 3.2801 -0.3051 1.1846 13 6 2.5854 -0.6105 2.3676 14 1 1.5837 -1.0111 2.3175 15 6 3.1929 -0.3952 3.6129 16 7 4.2351 0.3879 3.7048 17 14 2.5126 -1.2277 5.1404 18 1 3.2538 -2.4906 5.3875 19 1 2.6705 -0.3244 6.3084 20 1 1.0726 -1.5301 4.9396 21 1 0.7480 2.0222 -2.5938 22 1 3.4903 1.1382 -4.4491 23 1 6.4432 -0.0070 0.0384 24 1 5.2372 -0.5337 2.0734 25 1 4.6552 0.5372 4.5663 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396228377.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:08 Heat of formation + Delta-G solvation = 60.647854 kcal Electronic energy + Delta-G solvation = -14172.523016 eV Core-core repulsion = 11754.223213 eV Total energy + Delta-G solvation = -2418.299803 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.50409 -35.38399 -34.90445 -33.29750 -30.42164 -28.77689 -25.96656 -23.00039 -22.36155 -20.35305 -18.51372 -17.48677 -16.73340 -15.73753 -15.56927 -14.94003 -14.06850 -13.82039 -13.59291 -13.10577 -12.66227 -12.09317 -11.89650 -11.78821 -11.66450 -11.54514 -11.33740 -11.02110 -10.72250 -10.49772 -10.34721 -9.94616 -9.87789 -9.51434 -8.56151 -7.73386 -7.54801 -7.36056 -7.06435 -4.84076 1.21248 1.69780 2.17859 2.37331 2.58856 2.85686 2.88410 2.93340 2.97193 3.46327 3.63316 4.00987 4.21398 4.47665 5.14290 5.33940 5.47640 5.93566 5.96737 6.14970 6.44297 6.60112 6.71467 7.02620 7.09577 7.25844 7.50631 7.68882 8.04571 8.31284 8.37756 9.03063 9.63141 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.007640 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.919856 B = 3663.854227 C = 4722.804131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.303 3.697 3 C -0.164 4.164 4 C 0.027 3.973 5 C -0.111 4.111 6 S -0.107 6.107 7 C -0.143 4.143 8 S 0.068 5.932 9 C -0.231 4.231 10 C -0.062 4.062 11 C -0.111 4.111 12 C 0.152 3.848 13 C -0.423 4.423 14 H 0.091 0.909 15 C 0.076 3.924 16 N -0.763 5.763 17 Si 0.918 3.082 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.255 1.255 21 H 0.066 0.934 22 H 0.165 0.835 23 H 0.104 0.896 24 H 0.135 0.865 25 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.681 0.135 -4.733 6.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.174 5.174 2 C -0.007 4.007 3 C -0.174 4.174 4 C 0.017 3.983 5 C -0.238 4.238 6 S 0.048 5.952 7 C -0.281 4.281 8 S 0.330 5.670 9 C -0.347 4.347 10 C -0.085 4.085 11 C -0.132 4.132 12 C 0.146 3.854 13 C -0.450 4.450 14 H 0.109 0.891 15 C -0.147 4.147 16 N -0.386 5.386 17 Si 0.740 3.260 18 H -0.185 1.185 19 H -0.197 1.197 20 H -0.179 1.179 21 H 0.031 0.969 22 H 0.183 0.817 23 H 0.122 0.878 24 H 0.153 0.847 25 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.660 0.257 -5.447 6.567 hybrid contribution -0.238 0.647 1.637 1.776 sum 3.422 0.905 -3.810 5.201 Atomic orbital electron populations 1.80933 1.12505 1.13531 1.10443 1.25260 0.92407 0.91986 0.91083 1.15565 0.83805 1.23547 0.94450 1.18579 0.91345 0.97761 0.90630 1.20910 0.95296 1.11876 0.95734 1.85783 1.05178 1.16278 1.88000 1.25425 0.95949 1.04196 1.02557 1.83476 1.05980 1.73986 1.03548 1.21816 0.94913 1.20769 0.97213 1.19884 0.97883 1.00033 0.90681 1.21064 0.94039 1.01345 0.96735 1.17281 0.91638 0.86055 0.90471 1.19826 1.01939 1.33473 0.89771 0.89073 1.26160 0.93879 0.92815 1.01885 1.69705 1.16558 1.23687 1.28602 0.86093 0.81123 0.79907 0.78830 1.18539 1.19662 1.17888 0.96941 0.81732 0.87780 0.84719 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.15 18.16 41.84 0.76 -11.39 15 2 C 0.30 7.36 11.64 -22.47 -0.26 7.10 15 3 C -0.16 -3.90 5.87 -105.24 -0.62 -4.52 15 4 C 0.03 0.60 6.00 -104.91 -0.63 -0.03 15 5 C -0.11 -2.15 6.20 -38.63 -0.24 -2.39 15 6 S -0.11 -2.02 23.21 -107.50 -2.50 -4.51 15 7 C -0.14 -2.33 10.83 28.82 0.31 -2.02 15 8 S 0.07 1.10 23.23 -107.50 -2.50 -1.39 15 9 C -0.23 -4.65 6.50 -38.04 -0.25 -4.90 15 10 C -0.06 -1.25 9.96 -39.62 -0.39 -1.64 15 11 C -0.11 -2.42 8.58 -39.45 -0.34 -2.76 15 12 C 0.15 3.61 5.58 -106.70 -0.59 3.02 15 13 C -0.42 -10.07 8.45 -37.97 -0.32 -10.39 15 14 H 0.09 2.22 7.25 -52.49 -0.38 1.84 15 15 C 0.08 1.66 5.13 -17.29 -0.09 1.57 15 16 N -0.76 -16.71 10.97 55.56 0.61 -16.10 15 17 Si 0.92 16.62 29.60 -169.99 -5.03 11.59 15 18 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 19 H -0.27 -4.80 7.11 56.52 0.40 -4.40 15 20 H -0.26 -4.79 7.11 56.52 0.40 -4.39 15 21 H 0.07 1.21 9.07 97.61 0.89 2.10 15 22 H 0.17 2.13 8.06 -52.49 -0.42 1.71 15 23 H 0.10 1.78 8.06 -52.49 -0.42 1.36 15 24 H 0.14 2.91 6.18 -52.49 -0.32 2.58 15 25 H 0.29 5.71 8.29 -40.82 -0.34 5.37 15 LS Contribution 258.13 15.07 3.89 3.89 Total: -1.00 -24.90 258.13 -7.98 -32.88 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: 0.20 Total: 1.99 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -3.42 Total: -16.96 kcal Atomic # 7 Polarization: -28.85 SS G_CDS: 1.37 Total: -27.48 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.03 Total: 11.59 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -4.99 Total: -5.91 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -24.90 -7.98 -32.88 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396228377.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.532 kcal (2) G-P(sol) polarization free energy of solvation -24.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds