Wall clock time and date at job start Mon Mar 30 2020 07:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 S 1.75465 * 124.84993 * 50.76656 * 3 2 1 5 5 C 1.76042 * 91.79911 * 179.97438 * 4 3 2 6 6 C 1.39776 * 130.17435 * 180.02562 * 5 4 3 7 7 C 1.38096 * 121.53413 * 179.97438 * 6 5 4 8 8 C 1.37613 * 121.11828 * 359.97438 * 7 6 5 9 9 C 1.40370 * 120.09777 * 0.02562 * 8 7 6 10 10 C 1.40472 * 120.39501 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00392 * 212.88882 * 10 9 8 12 12 C 1.40001 * 119.99942 * 32.88452 * 10 9 8 13 13 N 1.30812 * 119.99734 * 9.79552 * 12 10 9 14 14 Si 1.86803 * 120.00012 * 189.79360 * 12 10 9 15 15 H 1.48495 * 109.47050 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.46768 * 120.00156 * 14 12 10 17 17 H 1.48498 * 109.46858 * 240.00137 * 14 12 10 18 18 C 1.39807 * 109.89899 * 359.97438 * 5 4 3 19 19 C 1.36683 * 124.85331 * 230.45247 * 3 2 1 20 20 S 1.76209 * 122.51274 * 0.02562 * 19 3 2 21 21 H 1.07997 * 119.23541 * 359.94358 * 6 5 4 22 22 H 1.07995 * 119.43877 * 180.02562 * 7 6 5 23 23 H 1.07996 * 119.95322 * 179.97438 * 8 7 6 24 24 H 0.96998 * 120.00013 * 179.97438 * 13 12 10 25 25 H 1.34492 * 103.00168 * 90.01609 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5710 -0.9097 -1.1154 5 6 5.0463 -0.3011 -0.3722 6 6 6.3847 -0.5550 -0.6852 7 6 7.4157 0.0272 0.0256 8 6 7.1628 0.8833 1.0729 9 6 5.8397 1.1787 1.4368 10 6 5.5744 2.0522 2.5045 11 1 4.7018 1.9002 3.1226 12 6 6.4411 3.1197 2.7676 13 7 7.3855 3.4209 1.9140 14 14 6.2490 4.1138 4.3374 15 1 5.1144 3.5743 5.1291 16 1 7.4972 4.0230 5.1366 17 1 5.9829 5.5339 3.9944 18 6 4.7278 0.5604 0.6818 19 6 3.3488 0.7152 0.8649 20 16 2.6702 1.7499 2.1194 21 1 6.6180 -1.2224 -1.5016 22 1 8.4377 -0.1924 -0.2456 23 1 7.9835 1.3278 1.6162 24 1 7.9858 4.1608 2.0961 25 1 2.5549 0.9170 3.1691 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396228686.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:11 Heat of formation + Delta-G solvation = 68.098579 kcal Electronic energy + Delta-G solvation = -14139.327797 eV Core-core repulsion = 11721.351082 eV Total energy + Delta-G solvation = -2417.976715 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -38.25534 -36.21113 -34.57767 -33.65889 -30.15958 -28.77863 -25.78210 -23.77940 -21.88969 -20.18808 -18.68767 -17.60702 -16.46436 -15.86361 -15.40673 -14.96615 -14.41807 -13.65553 -13.49546 -13.13233 -12.91146 -12.38702 -12.27391 -11.98082 -11.76302 -11.56744 -11.40154 -10.96349 -10.76874 -10.41624 -10.18806 -9.89296 -9.80167 -9.59510 -8.52077 -7.60814 -7.32788 -7.25912 -6.85744 -4.68697 0.87488 1.75441 2.26938 2.43801 2.62180 2.80828 2.87120 2.92740 2.95925 3.33171 3.60704 3.63731 3.92139 4.21016 4.69485 5.14148 5.89001 5.99706 6.10976 6.45053 6.58695 6.62418 6.78782 6.93469 7.27724 7.52737 7.60644 7.73784 8.02783 8.14527 8.27571 8.40974 9.62330 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.020719 B = 0.009142 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.117358 B = 3062.001121 C = 4321.753343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.306 3.694 3 C -0.203 4.203 4 S 0.092 5.908 5 C -0.057 4.057 6 C -0.226 4.226 7 C -0.054 4.054 8 C -0.176 4.176 9 C 0.149 3.851 10 C -0.382 4.382 11 H 0.109 0.891 12 C 0.067 3.933 13 N -0.754 5.754 14 Si 0.920 3.080 15 H -0.253 1.253 16 H -0.268 1.268 17 H -0.266 1.266 18 C -0.178 4.178 19 C 0.036 3.964 20 S -0.103 6.103 21 H 0.098 0.902 22 H 0.101 0.899 23 H 0.124 0.876 24 H 0.292 0.708 25 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 -1.584 0.951 2.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.007 4.007 3 C -0.324 4.324 4 S 0.356 5.644 5 C -0.174 4.174 6 C -0.254 4.254 7 C -0.075 4.075 8 C -0.198 4.198 9 C 0.142 3.858 10 C -0.409 4.409 11 H 0.127 0.873 12 C -0.157 4.157 13 N -0.376 5.376 14 Si 0.743 3.257 15 H -0.176 1.176 16 H -0.193 1.193 17 H -0.190 1.190 18 C -0.184 4.184 19 C -0.093 4.093 20 S 0.054 5.946 21 H 0.116 0.884 22 H 0.119 0.881 23 H 0.142 0.858 24 H 0.103 0.897 25 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -0.662 -1.674 0.202 1.812 hybrid contribution 1.178 0.180 1.586 1.984 sum 0.515 -1.495 1.788 2.387 Atomic orbital electron populations 1.81134 1.11247 1.10742 1.09585 1.24259 0.90923 0.92585 0.92960 1.19391 0.88145 1.14923 1.09974 1.83456 0.95378 1.49916 1.35643 1.22305 0.96372 1.00474 0.98282 1.19570 0.89259 1.10279 1.06291 1.20546 0.96740 0.95481 0.94768 1.21087 0.96396 1.01568 1.00723 1.18478 0.89267 0.88491 0.89555 1.20488 1.06624 1.05271 1.08496 0.87339 1.26221 0.93128 0.98088 0.98233 1.69791 1.11778 1.23357 1.32653 0.86014 0.79918 0.79569 0.80235 1.17613 1.19307 1.19049 1.18818 0.91060 1.07522 1.01035 1.20259 0.94056 0.97904 0.97109 1.85649 1.82052 1.17580 1.09355 0.88394 0.88074 0.85837 0.89661 0.96268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.11 18.54 41.84 0.78 -8.33 15 2 C 0.31 6.09 15.12 -22.47 -0.34 5.75 15 3 C -0.20 -4.06 6.28 -38.22 -0.24 -4.30 15 4 S 0.09 1.70 23.22 -107.50 -2.50 -0.80 15 5 C -0.06 -1.19 6.46 -38.42 -0.25 -1.44 15 6 C -0.23 -4.48 10.02 -39.06 -0.39 -4.88 15 7 C -0.05 -1.07 9.95 -39.86 -0.40 -1.46 15 8 C -0.18 -3.85 8.60 -39.01 -0.34 -4.19 15 9 C 0.15 3.42 5.68 -104.28 -0.59 2.82 15 10 C -0.38 -8.46 7.89 -38.08 -0.30 -8.76 15 11 H 0.11 2.32 5.29 -43.31 -0.23 2.09 15 12 C 0.07 1.40 5.24 -17.33 -0.09 1.31 15 13 N -0.75 -16.26 11.07 55.55 0.62 -15.65 15 14 Si 0.92 15.93 29.57 -169.99 -5.03 10.90 15 15 H -0.25 -4.37 7.11 56.52 0.40 -3.97 15 16 H -0.27 -4.53 7.11 56.52 0.40 -4.13 15 17 H -0.27 -4.61 7.11 56.52 0.40 -4.21 15 18 C -0.18 -3.98 6.02 -104.69 -0.63 -4.61 15 19 C 0.04 0.76 6.15 -39.49 -0.24 0.52 15 20 S -0.10 -2.03 21.70 -107.50 -2.33 -4.36 15 21 H 0.10 1.71 8.06 -52.49 -0.42 1.29 15 22 H 0.10 1.71 8.06 -52.49 -0.42 1.29 15 23 H 0.12 2.72 6.50 -52.49 -0.34 2.38 15 24 H 0.29 5.62 8.30 -40.82 -0.34 5.28 15 25 H 0.07 1.32 9.07 97.61 0.89 2.20 15 LS Contribution 258.09 15.07 3.89 3.89 Total: -1.00 -23.30 258.09 -8.05 -31.35 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: 0.34 Total: 2.23 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -3.81 Total: -19.23 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 1.39 Total: -23.98 kcal Atomic # 14 Polarization: 15.93 SS G_CDS: -5.03 Total: 10.90 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -4.83 Total: -5.16 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -23.30 -8.05 -31.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396228686.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.445 kcal (2) G-P(sol) polarization free energy of solvation -23.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds