Wall clock time and date at job start Mon Mar 30 2020 07:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 S 1.75465 * 124.84993 * 50.76656 * 3 2 1 5 5 C 1.76042 * 91.79911 * 179.97438 * 4 3 2 6 6 C 1.39776 * 130.17435 * 180.02562 * 5 4 3 7 7 C 1.38096 * 121.53413 * 179.97438 * 6 5 4 8 8 C 1.37613 * 121.11828 * 359.97438 * 7 6 5 9 9 C 1.40370 * 120.09777 * 0.02562 * 8 7 6 10 10 C 1.40472 * 120.39501 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00392 * 212.88882 * 10 9 8 12 12 C 1.40001 * 119.99942 * 32.88452 * 10 9 8 13 13 N 1.30812 * 119.99734 * 9.79552 * 12 10 9 14 14 Si 1.86803 * 120.00012 * 189.79360 * 12 10 9 15 15 H 1.48495 * 109.47050 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.46768 * 120.00156 * 14 12 10 17 17 H 1.48498 * 109.46858 * 240.00137 * 14 12 10 18 18 C 1.39807 * 109.89899 * 359.97438 * 5 4 3 19 19 C 1.36683 * 124.85331 * 230.45247 * 3 2 1 20 20 S 1.76209 * 122.51274 * 0.02562 * 19 3 2 21 21 H 1.07997 * 119.23541 * 359.94358 * 6 5 4 22 22 H 1.07995 * 119.43877 * 180.02562 * 7 6 5 23 23 H 1.07996 * 119.95322 * 179.97438 * 8 7 6 24 24 H 0.96998 * 120.00013 * 179.97438 * 13 12 10 25 25 H 1.34492 * 103.00168 * 90.01609 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5710 -0.9097 -1.1154 5 6 5.0463 -0.3011 -0.3722 6 6 6.3847 -0.5550 -0.6852 7 6 7.4157 0.0272 0.0256 8 6 7.1628 0.8833 1.0729 9 6 5.8397 1.1787 1.4368 10 6 5.5744 2.0522 2.5045 11 1 4.7018 1.9002 3.1226 12 6 6.4411 3.1197 2.7676 13 7 7.3855 3.4209 1.9140 14 14 6.2490 4.1138 4.3374 15 1 5.1144 3.5743 5.1291 16 1 7.4972 4.0230 5.1366 17 1 5.9829 5.5339 3.9944 18 6 4.7278 0.5604 0.6818 19 6 3.3488 0.7152 0.8649 20 16 2.6702 1.7499 2.1194 21 1 6.6180 -1.2224 -1.5016 22 1 8.4377 -0.1924 -0.2456 23 1 7.9835 1.3278 1.6162 24 1 7.9858 4.1608 2.0961 25 1 2.5549 0.9170 3.1691 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396228686.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:10 Heat of formation + Delta-G solvation = 58.790359 kcal Electronic energy + Delta-G solvation = -14139.731432 eV Core-core repulsion = 11721.351082 eV Total energy + Delta-G solvation = -2418.380350 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.84592 -37.82706 -36.16282 -35.23666 -31.75762 -30.37959 -27.38483 -25.37299 -23.48675 -21.78847 -20.25795 -19.19685 -18.02629 -17.44360 -16.92936 -16.53458 -15.94428 -15.26065 -15.07209 -14.63648 -14.48349 -13.98223 -13.86130 -13.57599 -13.29889 -13.10600 -12.86169 -12.51833 -12.18150 -11.98707 -11.73603 -11.44274 -11.35720 -11.13977 -10.10614 -9.20689 -8.87357 -8.80591 -8.41959 -6.31414 -0.72183 0.20318 0.70589 0.87094 1.03318 1.22158 1.44685 1.54504 1.58454 1.76732 2.02448 2.18803 2.32500 2.64326 3.08308 3.51353 4.31657 4.44967 4.54513 4.89054 5.01605 5.05511 5.19060 5.34895 5.67210 5.92520 6.03213 6.13115 6.41720 6.54157 6.67038 6.80130 8.11472 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.020719 B = 0.009142 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.117358 B = 3062.001121 C = 4321.753343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.313 3.687 3 C -0.205 4.205 4 S 0.154 5.846 5 C -0.080 4.080 6 C -0.229 4.229 7 C -0.050 4.050 8 C -0.199 4.199 9 C 0.125 3.875 10 C -0.407 4.407 11 H 0.109 0.891 12 C 0.038 3.962 13 N -0.783 5.783 14 Si 0.977 3.023 15 H -0.254 1.254 16 H -0.260 1.260 17 H -0.265 1.265 18 C -0.200 4.200 19 C 0.019 3.981 20 S -0.108 6.108 21 H 0.125 0.875 22 H 0.130 0.870 23 H 0.115 0.885 24 H 0.300 0.700 25 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.562 -2.073 0.631 2.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.001 4.001 3 C -0.327 4.327 4 S 0.419 5.581 5 C -0.198 4.198 6 C -0.256 4.256 7 C -0.072 4.072 8 C -0.221 4.221 9 C 0.119 3.881 10 C -0.434 4.434 11 H 0.127 0.873 12 C -0.183 4.183 13 N -0.405 5.405 14 Si 0.797 3.203 15 H -0.177 1.177 16 H -0.184 1.184 17 H -0.189 1.189 18 C -0.207 4.207 19 C -0.110 4.110 20 S 0.049 5.951 21 H 0.143 0.857 22 H 0.148 0.852 23 H 0.132 0.868 24 H 0.111 0.889 25 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.824 -2.182 -0.136 2.336 hybrid contribution 1.167 0.233 1.582 1.980 sum 0.343 -1.949 1.445 2.450 Atomic orbital electron populations 1.81143 1.11381 1.10869 1.09762 1.24180 0.90779 0.92374 0.92738 1.19618 0.88353 1.14615 1.10068 1.83178 0.92927 1.48225 1.33776 1.22682 0.97992 1.00621 0.98469 1.19917 0.88820 1.10202 1.06676 1.20877 0.98411 0.94213 0.93694 1.21109 0.95951 1.02975 1.02061 1.18798 0.89977 0.89101 0.90262 1.20644 1.07472 1.06160 1.09110 0.87310 1.26870 0.92573 0.98453 1.00413 1.69810 1.12557 1.24215 1.33966 0.85175 0.79982 0.78053 0.77040 1.17699 1.18424 1.18919 1.19053 0.91520 1.08286 1.01793 1.20371 0.93994 0.98656 0.98005 1.85557 1.81572 1.18173 1.09830 0.85749 0.85198 0.86753 0.88889 0.94962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -17.63 18.54 19.00 0.35 -17.28 15 2 C 0.31 11.93 15.12 88.33 1.34 13.27 15 3 C -0.20 -7.91 6.28 23.15 0.15 -7.77 15 4 S 0.15 5.33 23.22 -56.49 -1.31 4.02 15 5 C -0.08 -3.23 6.46 23.02 0.15 -3.08 15 6 C -0.23 -8.63 10.02 22.61 0.23 -8.40 15 7 C -0.05 -1.94 9.95 22.09 0.22 -1.72 15 8 C -0.20 -8.77 8.60 22.64 0.19 -8.58 15 9 C 0.13 5.81 5.68 -19.64 -0.11 5.70 15 10 C -0.41 -18.29 7.89 23.24 0.18 -18.11 15 11 H 0.11 4.72 5.29 -8.74 -0.05 4.67 15 12 C 0.04 1.59 5.24 85.27 0.45 2.04 15 13 N -0.78 -34.16 11.07 21.84 0.24 -33.92 15 14 Si 0.98 32.41 29.57 68.60 2.03 34.44 15 15 H -0.25 -8.34 7.11 99.48 0.71 -7.63 15 16 H -0.26 -8.19 7.11 99.48 0.71 -7.48 15 17 H -0.26 -8.64 7.11 99.48 0.71 -7.94 15 18 C -0.20 -8.90 6.02 -19.91 -0.12 -9.02 15 19 C 0.02 0.81 6.15 22.33 0.14 0.95 15 20 S -0.11 -4.20 21.70 -56.49 -1.23 -5.43 15 21 H 0.12 3.96 8.06 -2.91 -0.02 3.94 15 22 H 0.13 4.13 8.06 -2.91 -0.02 4.10 15 23 H 0.11 5.15 6.50 -2.91 -0.02 5.13 15 24 H 0.30 11.63 8.30 -92.71 -0.77 10.86 15 25 H 0.09 3.05 9.07 73.35 0.67 3.72 15 Total: -1.00 -48.32 258.09 4.80 -43.52 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.91 Total: 9.37 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 2.81 Total: -34.72 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.59 Total: -51.20 kcal Atomic # 14 Polarization: 32.41 SS G_CDS: 2.03 Total: 34.44 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.54 Total: -1.41 kcal Total: -48.32 4.80 -43.52 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396228686.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.311 kcal (2) G-P(sol) polarization free energy of solvation -48.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds