Wall clock time and date at job start Mon Mar 30 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.45433 * 2 1 4 4 N 1.46929 * 109.51586 * 119.99270 * 2 1 3 5 5 C 1.46849 * 111.22260 * 181.73913 * 4 2 1 6 6 C 1.53038 * 109.52272 * 298.25938 * 5 4 2 7 7 C 1.53111 * 109.28018 * 59.17604 * 6 5 4 8 8 C 1.53041 * 109.46562 * 240.02304 * 2 1 3 9 9 H 1.08999 * 109.49970 * 60.82424 * 8 2 1 10 10 N 1.46504 * 109.50315 * 300.75086 * 8 2 1 11 11 C 1.38855 * 120.00075 * 155.07625 * 10 8 2 12 12 C 1.39563 * 119.84043 * 179.97438 * 11 10 8 13 13 C 1.36342 * 120.16234 * 179.97438 * 12 11 10 14 14 C 1.40894 * 119.83206 * 0.02562 * 13 12 11 15 15 C 1.41133 * 120.15062 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00476 * 335.46173 * 15 14 13 17 17 C 1.39872 * 119.99829 * 155.18359 * 15 14 13 18 18 N 1.30910 * 119.99715 * 342.60470 * 17 15 14 19 19 Si 1.86797 * 120.00285 * 162.60489 * 17 15 14 20 20 H 1.48504 * 109.46630 * 60.00164 * 19 17 15 21 21 H 1.48498 * 109.47477 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46903 * 300.00349 * 19 17 15 23 23 C 1.40885 * 119.69047 * 0.25206 * 14 13 12 24 24 C 1.36339 * 119.83266 * 359.48615 * 23 14 13 25 25 H 1.08997 * 109.47408 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47160 * 299.97716 * 1 2 3 27 27 H 1.09004 * 109.47091 * 59.97756 * 1 2 3 28 28 H 1.00902 * 110.98981 * 305.84172 * 4 2 1 29 29 H 1.09001 * 109.46350 * 178.23798 * 5 4 2 30 30 H 1.09005 * 109.45053 * 58.26244 * 5 4 2 31 31 H 1.09007 * 109.50189 * 299.23365 * 6 5 4 32 32 H 1.09001 * 109.53714 * 179.14275 * 6 5 4 33 33 H 1.09005 * 109.52355 * 182.44352 * 7 6 5 34 34 H 1.08998 * 109.57602 * 62.28548 * 7 6 5 35 35 H 0.96998 * 119.99862 * 335.07164 * 10 8 2 36 36 H 1.07998 * 119.92209 * 359.97438 * 12 11 10 37 37 H 1.08000 * 120.08497 * 180.02562 * 13 12 11 38 38 H 0.97001 * 119.99686 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.07852 * 179.75525 * 23 14 13 40 40 H 1.08003 * 119.91597 * 180.27376 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 7 2.0208 -0.6923 1.1994 5 6 3.4880 -0.6783 1.2583 6 6 4.0556 -1.4191 0.0454 7 6 3.5710 -0.7361 -1.2364 8 6 2.0399 -0.7210 -1.2499 9 1 1.6889 -0.1987 -2.1399 10 7 1.5372 -2.0970 -1.2602 11 6 1.4064 -2.7794 -2.4624 12 6 0.9276 -4.0903 -2.4683 13 6 0.7961 -4.7663 -3.6450 14 6 1.1454 -4.1384 -4.8569 15 6 1.0124 -4.8320 -6.0788 16 1 1.0343 -5.9117 -6.0920 17 6 0.8465 -4.1213 -7.2720 18 7 0.4762 -2.8661 -7.2400 19 14 1.1533 -4.9631 -8.9110 20 1 0.2342 -6.1210 -9.0524 21 1 0.9095 -4.0006 -10.0152 22 1 2.5594 -5.4373 -8.9684 23 6 1.6336 -2.8169 -4.8427 24 6 1.7548 -2.1513 -3.6590 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5142 -0.8898 28 1 1.6216 -0.2933 2.0358 29 1 3.8196 -1.1706 2.1725 30 1 3.8417 0.3528 1.2522 31 1 3.7133 -2.4539 0.0581 32 1 5.1448 -1.3957 0.0808 33 1 3.9374 -1.2862 -2.1032 34 1 3.9457 0.2869 -1.2692 35 1 1.2957 -2.5314 -0.4272 36 1 0.6606 -4.5705 -1.5385 37 1 0.4251 -5.7806 -3.6481 38 1 0.3615 -2.3730 -8.0675 39 1 1.9069 -2.3309 -5.7676 40 1 2.1247 -1.1366 -3.6470 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396540668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:51 Heat of formation + Delta-G solvation = 15.827975 kcal Electronic energy + Delta-G solvation = -19590.840841 eV Core-core repulsion = 16790.309706 eV Total energy + Delta-G solvation = -2800.531135 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.36376 -37.38867 -34.43656 -32.81886 -32.63949 -30.48668 -29.36049 -28.09694 -26.61086 -24.33658 -23.09416 -21.85508 -20.81738 -20.38289 -18.54256 -17.13339 -16.75914 -15.63319 -15.25407 -14.87184 -14.58886 -14.12519 -13.88965 -13.74307 -13.06787 -12.90332 -12.52167 -12.34014 -12.07023 -11.99008 -11.68344 -11.56190 -11.39167 -11.25577 -10.96565 -10.79018 -10.65976 -10.56668 -10.27189 -10.10034 -9.62757 -9.19566 -9.12322 -8.53855 -8.36889 -7.40703 -6.56243 -6.25491 -3.95174 2.99108 3.16942 3.18574 3.21365 3.43415 4.06209 4.10588 4.55748 4.82076 4.84411 4.98046 5.15269 5.20761 5.39997 5.44482 5.57034 5.75044 5.80233 5.88167 5.91958 5.93941 6.08494 6.17436 6.34254 6.36820 6.43262 6.48546 6.53577 6.97994 7.02055 7.09524 7.28183 7.33230 7.44248 7.67128 7.78169 7.95479 8.22719 8.39828 8.62454 8.83209 8.97490 9.13523 9.24927 10.44619 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.037539 B = 0.004463 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.720319 B = 6272.052549 C = 6285.164781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.078 3.922 3 H 0.040 0.960 4 N -0.683 5.683 5 C 0.061 3.939 6 C -0.112 4.112 7 C -0.140 4.140 8 C 0.173 3.827 9 H 0.073 0.927 10 N -0.741 5.741 11 C 0.102 3.898 12 C -0.163 4.163 13 C -0.185 4.185 14 C 0.071 3.929 15 C -0.469 4.469 16 H 0.070 0.930 17 C 0.075 3.925 18 N -0.811 5.811 19 Si 0.902 3.098 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.267 1.267 23 C -0.122 4.122 24 C -0.169 4.169 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.338 0.662 29 H 0.069 0.931 30 H 0.024 0.976 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.391 0.609 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.275 0.725 39 H 0.116 0.884 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.730 6.914 12.442 14.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 H 0.058 0.942 4 N -0.315 5.315 5 C -0.068 4.068 6 C -0.150 4.150 7 C -0.179 4.179 8 C 0.065 3.935 9 H 0.090 0.910 10 N -0.375 5.375 11 C 0.004 3.996 12 C -0.185 4.185 13 C -0.205 4.205 14 C 0.068 3.932 15 C -0.500 4.500 16 H 0.089 0.911 17 C -0.140 4.140 18 N -0.439 5.439 19 Si 0.727 3.273 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.192 1.192 23 C -0.142 4.142 24 C -0.191 4.191 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.155 0.845 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.226 0.774 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.134 0.866 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.689 6.643 11.901 14.120 hybrid contribution 0.197 0.511 -0.289 0.619 sum 3.885 7.154 11.612 14.182 Atomic orbital electron populations 1.21762 0.93933 1.03240 1.01046 1.21775 0.95662 0.94802 0.90969 0.94243 1.60246 1.07183 1.59544 1.04521 1.21907 0.87696 0.98184 0.99017 1.21477 0.98835 1.00951 0.93711 1.22114 0.97557 0.99704 0.98550 1.20563 0.91995 0.85251 0.95708 0.90953 1.43802 1.75545 1.12362 1.05841 1.17387 1.04699 0.92028 0.85465 1.19791 1.07987 0.93841 0.96876 1.20543 1.07847 0.99413 0.92688 1.17463 0.91290 0.92362 0.92051 1.19320 1.45495 0.94201 0.90994 0.91142 1.25765 0.92646 0.94736 1.00807 1.69854 1.34818 1.09818 1.29368 0.86489 0.79874 0.79806 0.81138 1.19335 1.20652 1.19158 1.20921 1.01154 0.96127 0.96031 1.20096 1.08367 0.98407 0.92210 0.91079 0.93437 0.92044 0.84456 0.91231 0.95779 0.90651 0.92405 0.90989 0.92873 0.77438 0.89724 0.89258 0.91416 0.86591 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.27 37.15 0.34 -1.35 16 2 C 0.08 0.95 2.75 -67.68 -0.19 0.76 16 3 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 4 N -0.68 -7.52 5.98 -106.70 -0.64 -8.16 16 5 C 0.06 0.65 6.55 -3.83 -0.03 0.62 16 6 C -0.11 -1.41 5.93 -26.65 -0.16 -1.57 16 7 C -0.14 -1.98 5.59 -26.61 -0.15 -2.12 16 8 C 0.17 2.59 1.94 -67.85 -0.13 2.46 16 9 H 0.07 1.20 6.45 -51.93 -0.33 0.86 16 10 N -0.74 -12.87 3.84 -51.95 -0.20 -13.07 16 11 C 0.10 2.21 6.65 -83.69 -0.56 1.66 16 12 C -0.16 -3.72 9.82 -39.77 -0.39 -4.11 16 13 C -0.18 -4.67 9.74 -39.26 -0.38 -5.05 16 14 C 0.07 1.96 5.57 -106.79 -0.59 1.36 16 15 C -0.47 -12.98 9.03 -37.87 -0.34 -13.32 16 16 H 0.07 1.89 7.90 -52.49 -0.41 1.47 16 17 C 0.08 1.97 5.14 -17.33 -0.09 1.88 16 18 N -0.81 -21.90 10.96 55.54 0.61 -21.29 16 19 Si 0.90 19.59 29.59 -169.99 -5.03 14.56 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 23 C -0.12 -3.24 8.63 -39.26 -0.34 -3.58 16 24 C -0.17 -3.96 8.75 -39.77 -0.35 -4.30 16 25 H 0.07 0.97 7.40 -51.93 -0.38 0.58 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.34 3.08 8.79 -39.29 -0.35 2.74 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 1.10 7.73 -51.92 -0.40 0.70 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.18 7.73 -51.93 -0.40 0.78 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.39 6.58 7.91 -40.82 -0.32 6.26 16 36 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 37 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 39 H 0.12 3.20 6.17 -52.49 -0.32 2.88 16 40 H 0.09 1.87 6.11 -52.48 -0.32 1.55 16 LS Contribution 314.66 15.07 4.74 4.74 Total: -1.00 -27.76 314.66 -10.05 -37.82 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -6.19 Total: 12.05 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -3.35 Total: -26.66 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: -0.23 Total: -42.51 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.76 -10.05 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396540668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.647 kcal (2) G-P(sol) polarization free energy of solvation -27.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds