Wall clock time and date at job start Mon Mar 30 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.45433 * 2 1 4 4 N 1.46929 * 109.51586 * 119.99270 * 2 1 3 5 5 C 1.46849 * 111.22260 * 181.73913 * 4 2 1 6 6 C 1.53038 * 109.52272 * 298.25938 * 5 4 2 7 7 C 1.53111 * 109.28018 * 59.17604 * 6 5 4 8 8 C 1.53041 * 109.46562 * 240.02304 * 2 1 3 9 9 H 1.08999 * 109.49970 * 60.82424 * 8 2 1 10 10 N 1.46504 * 109.50315 * 300.75086 * 8 2 1 11 11 C 1.38855 * 120.00075 * 155.07625 * 10 8 2 12 12 C 1.39563 * 119.84043 * 179.97438 * 11 10 8 13 13 C 1.36342 * 120.16234 * 179.97438 * 12 11 10 14 14 C 1.40894 * 119.83206 * 0.02562 * 13 12 11 15 15 C 1.41133 * 120.15062 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00476 * 335.46173 * 15 14 13 17 17 C 1.39872 * 119.99829 * 155.18359 * 15 14 13 18 18 N 1.30910 * 119.99715 * 342.60470 * 17 15 14 19 19 Si 1.86797 * 120.00285 * 162.60489 * 17 15 14 20 20 H 1.48504 * 109.46630 * 60.00164 * 19 17 15 21 21 H 1.48498 * 109.47477 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46903 * 300.00349 * 19 17 15 23 23 C 1.40885 * 119.69047 * 0.25206 * 14 13 12 24 24 C 1.36339 * 119.83266 * 359.48615 * 23 14 13 25 25 H 1.08997 * 109.47408 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47160 * 299.97716 * 1 2 3 27 27 H 1.09004 * 109.47091 * 59.97756 * 1 2 3 28 28 H 1.00902 * 110.98981 * 305.84172 * 4 2 1 29 29 H 1.09001 * 109.46350 * 178.23798 * 5 4 2 30 30 H 1.09005 * 109.45053 * 58.26244 * 5 4 2 31 31 H 1.09007 * 109.50189 * 299.23365 * 6 5 4 32 32 H 1.09001 * 109.53714 * 179.14275 * 6 5 4 33 33 H 1.09005 * 109.52355 * 182.44352 * 7 6 5 34 34 H 1.08998 * 109.57602 * 62.28548 * 7 6 5 35 35 H 0.96998 * 119.99862 * 335.07164 * 10 8 2 36 36 H 1.07998 * 119.92209 * 359.97438 * 12 11 10 37 37 H 1.08000 * 120.08497 * 180.02562 * 13 12 11 38 38 H 0.97001 * 119.99686 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.07852 * 179.75525 * 23 14 13 40 40 H 1.08003 * 119.91597 * 180.27376 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 7 2.0208 -0.6923 1.1994 5 6 3.4880 -0.6783 1.2583 6 6 4.0556 -1.4191 0.0454 7 6 3.5710 -0.7361 -1.2364 8 6 2.0399 -0.7210 -1.2499 9 1 1.6889 -0.1987 -2.1399 10 7 1.5372 -2.0970 -1.2602 11 6 1.4064 -2.7794 -2.4624 12 6 0.9276 -4.0903 -2.4683 13 6 0.7961 -4.7663 -3.6450 14 6 1.1454 -4.1384 -4.8569 15 6 1.0124 -4.8320 -6.0788 16 1 1.0343 -5.9117 -6.0920 17 6 0.8465 -4.1213 -7.2720 18 7 0.4762 -2.8661 -7.2400 19 14 1.1533 -4.9631 -8.9110 20 1 0.2342 -6.1210 -9.0524 21 1 0.9095 -4.0006 -10.0152 22 1 2.5594 -5.4373 -8.9684 23 6 1.6336 -2.8169 -4.8427 24 6 1.7548 -2.1513 -3.6590 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5142 -0.8898 28 1 1.6216 -0.2933 2.0358 29 1 3.8196 -1.1706 2.1725 30 1 3.8417 0.3528 1.2522 31 1 3.7133 -2.4539 0.0581 32 1 5.1448 -1.3957 0.0808 33 1 3.9374 -1.2862 -2.1032 34 1 3.9457 0.2869 -1.2692 35 1 1.2957 -2.5314 -0.4272 36 1 0.6606 -4.5705 -1.5385 37 1 0.4251 -5.7806 -3.6481 38 1 0.3615 -2.3730 -8.0675 39 1 1.9069 -2.3309 -5.7676 40 1 2.1247 -1.1366 -3.6470 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396540668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:51 Heat of formation + Delta-G solvation = -0.454837 kcal Electronic energy + Delta-G solvation = -19591.546917 eV Core-core repulsion = 16790.309706 eV Total energy + Delta-G solvation = -2801.237211 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.61413 -39.09284 -36.09538 -34.49402 -33.64001 -31.89990 -31.27703 -29.79976 -27.72205 -26.13498 -24.25395 -23.23022 -22.32141 -22.09806 -19.82810 -19.11776 -18.11814 -17.01716 -16.67547 -16.45689 -15.76835 -15.61755 -15.09202 -15.03334 -14.60003 -14.44810 -14.07506 -13.75843 -13.59994 -13.46251 -13.22247 -12.85499 -12.76610 -12.72111 -12.65311 -12.28456 -12.20098 -11.75307 -11.61433 -11.54148 -11.19307 -11.08430 -10.96754 -10.21876 -9.36296 -9.33124 -8.51263 -8.05540 -5.96115 1.15148 1.22678 1.40160 1.51149 1.62404 2.28816 2.87875 2.94433 3.35092 3.79524 3.86725 3.97887 4.13459 4.22970 4.40732 4.43504 4.49439 4.55574 4.63294 4.73577 4.85903 4.89158 4.99598 5.02143 5.06340 5.11843 5.19335 5.31033 5.32071 5.43739 5.45245 5.50147 5.74876 5.85768 6.02126 6.11809 6.22321 6.44713 6.58186 6.73881 6.96184 7.11875 7.23462 7.46029 8.51471 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.037539 B = 0.004463 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.720319 B = 6272.052549 C = 6285.164781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.087 3.913 3 H 0.056 0.944 4 N -0.689 5.689 5 C 0.066 3.934 6 C -0.110 4.110 7 C -0.138 4.138 8 C 0.165 3.835 9 H 0.055 0.945 10 N -0.726 5.726 11 C 0.125 3.875 12 C -0.171 4.171 13 C -0.193 4.193 14 C 0.031 3.969 15 C -0.508 4.508 16 H 0.066 0.934 17 C 0.032 3.968 18 N -0.844 5.844 19 Si 0.975 3.025 20 H -0.262 1.262 21 H -0.270 1.270 22 H -0.264 1.264 23 C -0.140 4.140 24 C -0.176 4.176 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.354 0.646 29 H 0.086 0.914 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.398 0.602 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.281 0.719 39 H 0.096 0.904 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.165 7.864 14.391 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 H 0.074 0.926 4 N -0.323 5.323 5 C -0.063 4.063 6 C -0.148 4.148 7 C -0.177 4.177 8 C 0.058 3.942 9 H 0.073 0.927 10 N -0.360 5.360 11 C 0.025 3.975 12 C -0.194 4.194 13 C -0.213 4.213 14 C 0.028 3.972 15 C -0.540 4.540 16 H 0.084 0.916 17 C -0.179 4.179 18 N -0.473 5.473 19 Si 0.797 3.203 20 H -0.187 1.187 21 H -0.194 1.194 22 H -0.188 1.188 23 C -0.161 4.161 24 C -0.199 4.199 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.173 0.827 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.234 0.766 36 H 0.130 0.870 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.126 7.618 13.912 16.389 hybrid contribution 0.080 0.298 -0.685 0.752 sum 4.207 7.916 13.227 15.979 Atomic orbital electron populations 1.21726 0.93791 1.02258 1.01926 1.21617 0.95652 0.95069 0.89951 0.92595 1.60168 1.07659 1.59737 1.04692 1.21886 0.87231 0.98775 0.98450 1.21457 0.99801 0.99675 0.93858 1.22059 0.96604 1.00666 0.98359 1.20768 0.92754 0.83694 0.96984 0.92686 1.43811 1.74504 1.13203 1.04471 1.17463 1.01779 0.91739 0.86508 1.20056 1.07836 0.94265 0.97202 1.20737 1.07735 0.99839 0.93033 1.17778 0.93077 0.93259 0.93052 1.19553 1.47852 0.94208 0.92376 0.91626 1.26583 0.91771 0.95379 1.04187 1.69923 1.35587 1.11209 1.30577 0.85366 0.79702 0.78825 0.76405 1.18681 1.19440 1.18831 1.20846 1.02478 0.96354 0.96381 1.20205 1.08591 0.99078 0.91978 0.92911 0.90916 0.92911 0.82656 0.89557 0.94402 0.92910 0.91109 0.93970 0.90907 0.76604 0.86956 0.88822 0.90884 0.88576 0.88024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.27 71.98 0.67 -2.30 16 2 C 0.09 1.86 2.75 44.92 0.12 1.98 16 3 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 4 N -0.69 -12.65 5.98 -491.50 -2.94 -15.59 16 5 C 0.07 1.14 6.55 86.33 0.57 1.71 16 6 C -0.11 -2.51 5.93 30.64 0.18 -2.32 16 7 C -0.14 -3.66 5.59 30.67 0.17 -3.49 16 8 C 0.17 4.68 1.94 45.04 0.09 4.77 16 9 H 0.06 1.78 6.45 -2.39 -0.02 1.76 16 10 N -0.73 -24.26 3.84 -318.28 -1.22 -25.48 16 11 C 0.13 5.42 6.65 38.67 0.26 5.68 16 12 C -0.17 -7.76 9.82 22.15 0.22 -7.54 16 13 C -0.19 -9.99 9.74 22.48 0.22 -9.77 16 14 C 0.03 1.79 5.57 -21.27 -0.12 1.67 16 15 C -0.51 -29.37 9.03 23.38 0.21 -29.16 16 16 H 0.07 3.68 7.90 -2.91 -0.02 3.66 16 17 C 0.03 1.74 5.14 85.23 0.44 2.18 16 18 N -0.84 -47.22 10.96 21.82 0.24 -46.98 16 19 Si 0.98 41.10 29.59 68.60 2.03 43.13 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 21 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 23 C -0.14 -7.77 8.63 22.47 0.19 -7.58 16 24 C -0.18 -8.43 8.75 22.15 0.19 -8.23 16 25 H 0.05 1.32 7.40 -2.39 -0.02 1.30 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.35 4.94 8.79 -89.69 -0.79 4.15 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.05 1.44 7.73 -2.38 -0.02 1.43 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 1.37 7.73 -2.38 -0.02 1.35 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.40 12.57 7.91 -92.71 -0.73 11.83 16 36 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.09 4.61 8.06 -2.91 -0.02 4.59 16 38 H 0.28 14.34 8.30 -92.71 -0.77 13.57 16 39 H 0.10 5.61 6.17 -2.91 -0.02 5.59 16 40 H 0.10 4.45 6.11 -2.91 -0.02 4.44 16 Total: -1.00 -62.25 314.66 1.03 -61.22 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: -0.48 Total: 36.14 kcal Atomic # 6 Polarization: -55.84 SS G_CDS: 3.41 Total: -52.43 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -3.92 Total: -88.06 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -62.25 1.03 -61.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396540668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.765 kcal (2) G-P(sol) polarization free energy of solvation -62.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds