Wall clock time and date at job start Mon Mar 30 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46001 * 2 1 4 4 N 1.46839 * 109.46806 * 240.01465 * 2 1 3 5 5 C 1.46843 * 111.19711 * 178.24074 * 4 2 1 6 6 C 1.53038 * 109.52500 * 61.74281 * 5 4 2 7 7 C 1.53115 * 109.27754 * 300.82124 * 6 5 4 8 8 C 1.53040 * 109.45767 * 119.95770 * 2 1 3 9 9 H 1.08999 * 109.50042 * 59.26616 * 8 2 1 10 10 N 1.46501 * 109.50724 * 299.13862 * 8 2 1 11 11 C 1.38857 * 119.99763 * 154.99781 * 10 8 2 12 12 C 1.39569 * 119.84289 * 359.73669 * 11 10 8 13 13 C 1.36339 * 120.15734 * 179.71904 * 12 11 10 14 14 C 1.40885 * 119.83711 * 0.54639 * 13 12 11 15 15 C 1.41141 * 120.15340 * 179.70643 * 14 13 12 16 16 H 1.08000 * 119.99697 * 204.62721 * 15 14 13 17 17 C 1.39863 * 120.00202 * 24.62104 * 15 14 13 18 18 N 1.30899 * 119.99989 * 17.96472 * 17 15 14 19 19 Si 1.86804 * 119.99991 * 197.96902 * 17 15 14 20 20 H 1.48497 * 109.47018 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46931 * 119.99979 * 19 17 15 22 22 H 1.48500 * 109.46989 * 240.00070 * 19 17 15 23 23 C 1.40882 * 119.69083 * 359.72163 * 14 13 12 24 24 C 1.36342 * 119.83325 * 0.02562 * 23 14 13 25 25 H 1.09006 * 109.46763 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46983 * 59.98874 * 1 2 3 27 27 H 1.08993 * 109.47403 * 299.98474 * 1 2 3 28 28 H 1.00903 * 111.00225 * 302.34075 * 4 2 1 29 29 H 1.09001 * 109.46140 * 181.75697 * 5 4 2 30 30 H 1.08998 * 109.46753 * 301.73474 * 5 4 2 31 31 H 1.09005 * 109.49974 * 60.76098 * 6 5 4 32 32 H 1.08996 * 109.50303 * 180.83511 * 6 5 4 33 33 H 1.09002 * 109.52483 * 177.55859 * 7 6 5 34 34 H 1.08995 * 109.52234 * 297.74550 * 7 6 5 35 35 H 0.97000 * 119.99987 * 335.00886 * 10 8 2 36 36 H 1.07994 * 119.91767 * 359.96973 * 12 11 10 37 37 H 1.08004 * 120.07818 * 180.26957 * 13 12 11 38 38 H 0.97001 * 119.99847 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.08348 * 179.97438 * 23 14 13 40 40 H 1.07998 * 119.91377 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0194 -0.6919 -1.1991 5 6 3.4866 -0.6778 -1.2587 6 6 4.0549 -1.4186 -0.0462 7 6 3.5709 -0.7356 1.2359 8 6 2.0398 -0.7206 1.2502 9 1 1.6659 -1.7444 1.2580 10 7 1.5688 -0.0178 2.4462 11 6 1.4363 -0.7026 3.6469 12 6 1.7475 -2.0617 3.7092 13 6 1.6252 -2.7391 4.8861 14 6 1.1724 -2.0665 6.0382 15 6 1.0375 -2.7627 7.2585 16 1 0.3491 -2.4059 8.0104 17 6 1.7949 -3.9146 7.4940 18 7 2.8597 -4.1567 6.7721 19 14 1.2871 -5.1077 8.8387 20 1 0.0569 -4.6089 9.5042 21 1 1.0207 -6.4414 8.2424 22 1 2.3797 -5.2216 9.8380 23 6 0.8548 -0.6958 5.9665 24 6 0.9868 -0.0300 4.7841 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 0.5136 0.8900 28 1 1.6648 -1.6356 -1.2422 29 1 3.8177 -1.1702 -2.1731 30 1 3.8404 0.3532 -1.2528 31 1 3.7126 -2.4534 -0.0588 32 1 5.1440 -1.3951 -0.0829 33 1 3.9378 -1.2857 2.1025 34 1 3.9456 0.2874 1.2674 35 1 1.3493 0.9259 2.3993 36 1 2.0899 -2.5771 2.8240 37 1 1.8706 -3.7898 4.9339 38 1 3.3852 -4.9555 6.9357 39 1 0.5067 -0.1741 6.8457 40 1 0.7440 1.0209 4.7277 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396541207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:01 Heat of formation + Delta-G solvation = 11.776737 kcal Electronic energy + Delta-G solvation = -19459.787093 eV Core-core repulsion = 16659.080283 eV Total energy + Delta-G solvation = -2800.706810 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.46177 -37.55923 -34.74228 -33.02499 -32.53719 -30.31606 -29.45157 -28.15180 -26.63113 -24.47712 -22.77080 -21.80157 -21.05535 -20.39205 -19.65251 -17.21405 -16.40260 -15.61696 -15.22676 -14.96884 -14.77270 -14.32440 -13.97657 -13.76590 -12.98691 -12.83005 -12.61223 -12.30233 -12.07337 -11.95399 -11.78752 -11.65678 -11.47403 -11.08688 -11.02925 -10.89745 -10.88818 -10.67274 -10.61927 -10.39633 -9.69133 -9.27636 -9.24393 -8.64068 -8.30805 -7.49254 -6.64480 -6.37749 -4.03108 2.90249 3.09822 3.15157 3.20629 3.34865 4.04592 4.06306 4.41341 4.74124 4.78259 4.95437 5.08562 5.13922 5.29636 5.41338 5.54024 5.65045 5.80454 5.82444 5.88165 5.96440 6.01799 6.11995 6.25896 6.28057 6.29063 6.38160 6.46717 6.87183 6.93361 7.01086 7.20403 7.30155 7.35747 7.56560 7.69114 7.84262 8.15451 8.29541 8.49941 8.70775 8.80659 9.06313 9.15412 10.37283 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.032004 B = 0.004593 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.689718 B = 6095.196662 C = 6561.395445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.078 3.922 3 H 0.078 0.922 4 N -0.678 5.678 5 C 0.056 3.944 6 C -0.156 4.156 7 C -0.137 4.137 8 C 0.137 3.863 9 H 0.070 0.930 10 N -0.752 5.752 11 C 0.095 3.905 12 C -0.164 4.164 13 C -0.124 4.124 14 C 0.074 3.926 15 C -0.467 4.467 16 H 0.073 0.927 17 C 0.075 3.925 18 N -0.809 5.809 19 Si 0.901 3.099 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.277 1.277 23 C -0.187 4.187 24 C -0.160 4.160 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.340 0.660 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.383 0.617 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.275 0.725 39 H 0.091 0.909 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.323 4.289 -12.527 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 H 0.096 0.904 4 N -0.307 5.307 5 C -0.073 4.073 6 C -0.196 4.196 7 C -0.177 4.177 8 C 0.028 3.972 9 H 0.088 0.912 10 N -0.386 5.386 11 C -0.002 4.002 12 C -0.186 4.186 13 C -0.144 4.144 14 C 0.071 3.929 15 C -0.498 4.498 16 H 0.091 0.909 17 C -0.140 4.140 18 N -0.436 5.436 19 Si 0.726 3.274 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.203 1.203 23 C -0.207 4.207 24 C -0.182 4.182 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.157 0.843 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.216 0.784 36 H 0.104 0.896 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.482 4.525 -13.045 13.816 hybrid contribution 0.242 -0.956 1.430 1.737 sum 0.724 3.568 -11.615 12.172 Atomic orbital electron populations 1.21749 0.93959 1.02216 1.01837 1.21785 0.95710 0.98233 0.87542 0.90386 1.60822 1.08689 1.22469 1.38745 1.22025 0.87533 1.00735 0.97032 1.22281 1.01181 0.99998 0.96129 1.22134 0.97207 1.00836 0.97499 1.21344 0.92731 0.97097 0.86012 0.91238 1.43824 1.77648 1.10554 1.06554 1.17330 1.05386 0.91935 0.85530 1.20088 1.08066 0.92688 0.97727 1.20932 1.02740 0.99732 0.91028 1.17495 0.91823 0.90529 0.93062 1.19402 1.21145 1.07787 1.01490 0.90926 1.25787 0.93414 0.97998 0.96815 1.69865 1.11548 1.24881 1.37309 0.86380 0.79638 0.80377 0.80956 1.18611 1.19974 1.20274 1.20544 1.09736 0.94584 0.95816 1.19802 1.07928 0.97424 0.93026 0.92809 0.92411 0.91565 0.84256 0.90895 0.91105 0.92014 0.91616 0.91133 0.92251 0.78438 0.89574 0.86493 0.91422 0.89110 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.32 37.16 0.35 -1.29 16 2 C 0.08 0.94 2.60 -67.72 -0.18 0.76 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 4 N -0.68 -7.43 6.50 -106.76 -0.69 -8.12 16 5 C 0.06 0.57 6.55 -3.84 -0.03 0.55 16 6 C -0.16 -1.79 6.08 -26.65 -0.16 -1.95 16 7 C -0.14 -1.96 5.52 -26.61 -0.15 -2.11 16 8 C 0.14 1.99 1.72 -67.85 -0.12 1.88 16 9 H 0.07 1.13 6.43 -51.93 -0.33 0.80 16 10 N -0.75 -12.67 4.54 -51.95 -0.24 -12.90 16 11 C 0.10 2.04 6.65 -83.69 -0.56 1.48 16 12 C -0.16 -3.82 8.79 -39.77 -0.35 -4.17 16 13 C -0.12 -3.27 8.64 -39.26 -0.34 -3.61 16 14 C 0.07 2.01 5.57 -106.79 -0.60 1.41 16 15 C -0.47 -12.78 9.03 -37.87 -0.34 -13.12 16 16 H 0.07 1.93 7.91 -52.49 -0.41 1.51 16 17 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 18 N -0.81 -21.62 10.96 55.54 0.61 -21.01 16 19 Si 0.90 19.33 29.60 -169.99 -5.03 14.30 16 20 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 C -0.19 -4.64 9.74 -39.26 -0.38 -5.02 16 24 C -0.16 -3.57 9.82 -39.77 -0.39 -3.96 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.82 7.50 -51.93 -0.39 0.43 16 28 H 0.34 3.55 8.79 -39.29 -0.35 3.21 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.21 7.71 -51.93 -0.40 0.81 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.38 5.83 8.44 -40.82 -0.34 5.49 16 36 H 0.09 1.86 6.05 -52.49 -0.32 1.54 16 37 H 0.12 3.20 6.16 -52.48 -0.32 2.88 16 38 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 39 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 40 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 316.64 15.07 4.77 4.77 Total: -1.00 -27.64 316.64 -10.14 -37.78 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -6.23 Total: 12.48 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -3.33 Total: -27.30 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: -0.32 Total: -42.04 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.64 -10.14 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396541207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.553 kcal (2) G-P(sol) polarization free energy of solvation -27.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds