Wall clock time and date at job start Mon Mar 30 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46001 * 2 1 4 4 N 1.46839 * 109.46806 * 240.01465 * 2 1 3 5 5 C 1.46843 * 111.19711 * 178.24074 * 4 2 1 6 6 C 1.53038 * 109.52500 * 61.74281 * 5 4 2 7 7 C 1.53115 * 109.27754 * 300.82124 * 6 5 4 8 8 C 1.53040 * 109.45767 * 119.95770 * 2 1 3 9 9 H 1.08999 * 109.50042 * 59.26616 * 8 2 1 10 10 N 1.46501 * 109.50724 * 299.13862 * 8 2 1 11 11 C 1.38857 * 119.99763 * 154.99781 * 10 8 2 12 12 C 1.39569 * 119.84289 * 359.73669 * 11 10 8 13 13 C 1.36339 * 120.15734 * 179.71904 * 12 11 10 14 14 C 1.40885 * 119.83711 * 0.54639 * 13 12 11 15 15 C 1.41141 * 120.15340 * 179.70643 * 14 13 12 16 16 H 1.08000 * 119.99697 * 204.62721 * 15 14 13 17 17 C 1.39863 * 120.00202 * 24.62104 * 15 14 13 18 18 N 1.30899 * 119.99989 * 17.96472 * 17 15 14 19 19 Si 1.86804 * 119.99991 * 197.96902 * 17 15 14 20 20 H 1.48497 * 109.47018 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46931 * 119.99979 * 19 17 15 22 22 H 1.48500 * 109.46989 * 240.00070 * 19 17 15 23 23 C 1.40882 * 119.69083 * 359.72163 * 14 13 12 24 24 C 1.36342 * 119.83325 * 0.02562 * 23 14 13 25 25 H 1.09006 * 109.46763 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46983 * 59.98874 * 1 2 3 27 27 H 1.08993 * 109.47403 * 299.98474 * 1 2 3 28 28 H 1.00903 * 111.00225 * 302.34075 * 4 2 1 29 29 H 1.09001 * 109.46140 * 181.75697 * 5 4 2 30 30 H 1.08998 * 109.46753 * 301.73474 * 5 4 2 31 31 H 1.09005 * 109.49974 * 60.76098 * 6 5 4 32 32 H 1.08996 * 109.50303 * 180.83511 * 6 5 4 33 33 H 1.09002 * 109.52483 * 177.55859 * 7 6 5 34 34 H 1.08995 * 109.52234 * 297.74550 * 7 6 5 35 35 H 0.97000 * 119.99987 * 335.00886 * 10 8 2 36 36 H 1.07994 * 119.91767 * 359.96973 * 12 11 10 37 37 H 1.08004 * 120.07818 * 180.26957 * 13 12 11 38 38 H 0.97001 * 119.99847 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.08348 * 179.97438 * 23 14 13 40 40 H 1.07998 * 119.91377 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0194 -0.6919 -1.1991 5 6 3.4866 -0.6778 -1.2587 6 6 4.0549 -1.4186 -0.0462 7 6 3.5709 -0.7356 1.2359 8 6 2.0398 -0.7206 1.2502 9 1 1.6659 -1.7444 1.2580 10 7 1.5688 -0.0178 2.4462 11 6 1.4363 -0.7026 3.6469 12 6 1.7475 -2.0617 3.7092 13 6 1.6252 -2.7391 4.8861 14 6 1.1724 -2.0665 6.0382 15 6 1.0375 -2.7627 7.2585 16 1 0.3491 -2.4059 8.0104 17 6 1.7949 -3.9146 7.4940 18 7 2.8597 -4.1567 6.7721 19 14 1.2871 -5.1077 8.8387 20 1 0.0569 -4.6089 9.5042 21 1 1.0207 -6.4414 8.2424 22 1 2.3797 -5.2216 9.8380 23 6 0.8548 -0.6958 5.9665 24 6 0.9868 -0.0300 4.7841 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 0.5136 0.8900 28 1 1.6648 -1.6356 -1.2422 29 1 3.8177 -1.1702 -2.1731 30 1 3.8404 0.3532 -1.2528 31 1 3.7126 -2.4534 -0.0588 32 1 5.1440 -1.3951 -0.0829 33 1 3.9378 -1.2857 2.1025 34 1 3.9456 0.2874 1.2674 35 1 1.3493 0.9259 2.3993 36 1 2.0899 -2.5771 2.8240 37 1 1.8706 -3.7898 4.9339 38 1 3.3852 -4.9555 6.9357 39 1 0.5067 -0.1741 6.8457 40 1 0.7440 1.0209 4.7277 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396541207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:01 Heat of formation + Delta-G solvation = -4.760464 kcal Electronic energy + Delta-G solvation = -19460.504200 eV Core-core repulsion = 16659.080283 eV Total energy + Delta-G solvation = -2801.423917 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.68075 -39.23539 -36.34584 -34.70573 -33.57991 -31.75245 -31.33897 -29.76529 -27.73569 -26.21436 -24.01566 -23.28732 -22.35969 -21.85838 -21.10163 -19.17073 -17.98473 -16.94522 -16.73754 -16.22920 -15.90352 -15.75932 -15.36340 -15.05718 -14.63718 -14.42458 -13.93278 -13.72537 -13.62827 -13.58841 -13.13268 -12.83398 -12.82694 -12.75905 -12.54950 -12.31860 -12.11964 -11.95758 -11.75703 -11.69719 -11.56161 -11.15007 -11.04792 -10.32268 -9.42409 -9.35394 -8.56416 -8.14983 -6.01614 1.09094 1.17313 1.38812 1.53179 1.56981 2.26282 2.79427 2.84097 3.36122 3.70079 3.82848 3.97148 4.02616 4.17219 4.26895 4.37512 4.46220 4.50037 4.55047 4.67641 4.88818 4.90441 4.99983 5.01955 5.03281 5.11925 5.15410 5.23907 5.25600 5.33518 5.35087 5.44603 5.67304 5.79503 5.95407 6.04685 6.17970 6.38444 6.43310 6.66531 6.86906 7.07526 7.14461 7.32011 8.47149 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.032004 B = 0.004593 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.689718 B = 6095.196662 C = 6561.395445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.090 3.910 3 H 0.085 0.915 4 N -0.675 5.675 5 C 0.061 3.939 6 C -0.150 4.150 7 C -0.134 4.134 8 C 0.136 3.864 9 H 0.052 0.948 10 N -0.739 5.739 11 C 0.119 3.881 12 C -0.173 4.173 13 C -0.144 4.144 14 C 0.034 3.966 15 C -0.506 4.506 16 H 0.067 0.933 17 C 0.032 3.968 18 N -0.844 5.844 19 Si 0.976 3.024 20 H -0.260 1.260 21 H -0.267 1.267 22 H -0.268 1.268 23 C -0.195 4.195 24 C -0.166 4.166 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.344 0.656 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.281 0.719 39 H 0.096 0.904 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.246 5.248 -14.261 15.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.021 4.021 3 H 0.103 0.897 4 N -0.304 5.304 5 C -0.069 4.069 6 C -0.190 4.190 7 C -0.174 4.174 8 C 0.028 3.972 9 H 0.070 0.930 10 N -0.373 5.373 11 C 0.019 3.981 12 C -0.195 4.195 13 C -0.164 4.164 14 C 0.031 3.969 15 C -0.537 4.537 16 H 0.086 0.914 17 C -0.180 4.180 18 N -0.472 5.472 19 Si 0.797 3.203 20 H -0.184 1.184 21 H -0.192 1.192 22 H -0.193 1.193 23 C -0.215 4.215 24 C -0.188 4.188 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.162 0.838 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.231 0.769 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.408 5.516 -14.829 15.827 hybrid contribution 0.293 -1.122 1.795 2.137 sum 0.701 4.394 -13.034 13.772 Atomic orbital electron populations 1.21719 0.93589 1.01915 1.02212 1.21674 0.95898 0.98216 0.86348 0.89654 1.60856 1.09308 1.22777 1.37447 1.22072 0.86754 1.01057 0.97007 1.22251 1.01909 0.99625 0.95206 1.22061 0.96714 1.00856 0.97734 1.21517 0.93026 0.96423 0.86231 0.92981 1.43855 1.76609 1.11133 1.05737 1.17407 1.02407 0.91323 0.86968 1.20187 1.08328 0.93730 0.97225 1.20846 1.04259 0.99122 0.92172 1.17810 0.93688 0.91851 0.93514 1.19623 1.22374 1.09748 1.02004 0.91436 1.26606 0.92890 0.99174 0.99291 1.69931 1.12481 1.25679 1.39132 0.85262 0.79289 0.77831 0.77890 1.18361 1.19150 1.19328 1.20761 1.09498 0.94066 0.97189 1.20105 1.07453 0.98966 0.92315 0.93468 0.90973 0.92247 0.83810 0.88831 0.90580 0.92403 0.90562 0.94653 0.91802 0.76906 0.88390 0.88585 0.90835 0.88553 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.32 71.98 0.67 -2.18 16 2 C 0.09 1.91 2.60 44.94 0.12 2.03 16 3 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 4 N -0.67 -12.71 6.50 -491.69 -3.20 -15.91 16 5 C 0.06 1.03 6.55 86.33 0.57 1.59 16 6 C -0.15 -3.12 6.08 30.65 0.19 -2.94 16 7 C -0.13 -3.66 5.52 30.67 0.17 -3.49 16 8 C 0.14 3.74 1.72 45.05 0.08 3.82 16 9 H 0.05 1.65 6.43 -2.39 -0.02 1.63 16 10 N -0.74 -23.57 4.54 -318.28 -1.45 -25.01 16 11 C 0.12 5.00 6.65 38.67 0.26 5.25 16 12 C -0.17 -8.18 8.79 22.15 0.19 -7.98 16 13 C -0.14 -7.89 8.64 22.47 0.19 -7.69 16 14 C 0.03 1.93 5.57 -21.27 -0.12 1.81 16 15 C -0.51 -28.86 9.03 23.38 0.21 -28.65 16 16 H 0.07 3.74 7.91 -2.91 -0.02 3.72 16 17 C 0.03 1.71 5.13 85.23 0.44 2.15 16 18 N -0.84 -46.83 10.96 21.81 0.24 -46.59 16 19 Si 0.98 40.61 29.60 68.60 2.03 42.64 16 20 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 21 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 22 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 23 C -0.19 -9.85 9.74 22.47 0.22 -9.63 16 24 C -0.17 -7.27 9.82 22.15 0.22 -7.05 16 25 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.06 1.32 7.50 -2.39 -0.02 1.30 16 28 H 0.34 6.26 8.79 -89.69 -0.79 5.47 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.03 1.20 7.71 -2.39 -0.02 1.19 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 35 H 0.40 10.92 8.44 -92.71 -0.78 10.14 16 36 H 0.10 4.31 6.05 -2.91 -0.02 4.29 16 37 H 0.10 5.57 6.16 -2.91 -0.02 5.56 16 38 H 0.28 14.18 8.30 -92.71 -0.77 13.41 16 39 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -61.60 316.64 0.49 -61.10 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: -0.53 Total: 36.73 kcal Atomic # 6 Polarization: -56.36 SS G_CDS: 3.40 Total: -52.96 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -4.40 Total: -87.51 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -61.60 0.49 -61.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396541207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.344 kcal (2) G-P(sol) polarization free energy of solvation -61.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds