Wall clock time and date at job start Mon Mar 30 2020 06:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46154 * 2 1 4 4 N 1.46843 * 109.45629 * 240.02167 * 2 1 3 5 5 C 1.46846 * 111.19907 * 178.24973 * 4 2 1 6 6 C 1.53036 * 109.52537 * 61.73990 * 5 4 2 7 7 C 1.53113 * 109.28045 * 300.82349 * 6 5 4 8 8 C 1.53035 * 109.46133 * 119.97511 * 2 1 3 9 9 H 1.09003 * 109.50484 * 299.12737 * 8 2 1 10 10 N 1.46497 * 109.50554 * 59.24190 * 8 2 1 11 11 C 1.39684 * 120.00459 * 205.00000 * 10 8 2 12 12 C 1.39335 * 119.94791 * 359.72488 * 11 10 8 13 13 C 1.38485 * 120.42211 * 179.75896 * 12 11 10 14 14 C 1.37688 * 120.32462 * 0.51668 * 13 12 11 15 15 C 1.40751 * 119.89295 * 359.74404 * 14 13 12 16 16 C 1.41404 * 120.20963 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00647 * 204.47495 * 16 15 14 18 18 C 1.39939 * 119.99442 * 24.47727 * 16 15 14 19 19 N 1.30825 * 120.00281 * 17.86610 * 18 16 15 20 20 Si 1.86806 * 119.99753 * 197.86768 * 18 16 15 21 21 H 1.48497 * 109.47033 * 59.99950 * 20 18 16 22 22 H 1.48498 * 109.47157 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47042 * 300.00124 * 20 18 16 24 24 C 1.38280 * 119.95191 * 180.02562 * 11 10 8 25 25 H 1.08996 * 109.47072 * 300.00964 * 1 2 3 26 26 H 1.09008 * 109.46701 * 60.00295 * 1 2 3 27 27 H 1.08998 * 109.47192 * 180.02562 * 1 2 3 28 28 H 1.00896 * 111.00133 * 302.34495 * 4 2 1 29 29 H 1.09008 * 109.46333 * 301.72240 * 5 4 2 30 30 H 1.09000 * 109.45773 * 181.75635 * 5 4 2 31 31 H 1.08997 * 109.50503 * 180.87807 * 6 5 4 32 32 H 1.08999 * 109.53242 * 60.78059 * 6 5 4 33 33 H 1.09004 * 109.52241 * 297.75171 * 7 6 5 34 34 H 1.09000 * 109.57493 * 177.58724 * 7 6 5 35 35 H 0.97003 * 119.99451 * 25.00411 * 10 8 2 36 36 H 1.08000 * 119.78818 * 0.02562 * 12 11 10 37 37 H 1.07997 * 119.83804 * 180.25861 * 13 12 11 38 38 H 1.07996 * 120.04982 * 179.71397 * 14 13 12 39 39 H 0.97006 * 120.00122 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.16526 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 7 2.0191 -0.6918 -1.1993 5 6 3.4863 -0.6780 -1.2591 6 6 4.0546 -1.4191 -0.0467 7 6 3.5710 -0.7363 1.2355 8 6 2.0399 -0.7209 1.2499 9 1 1.6896 -0.1981 2.1399 10 7 1.5370 -2.0968 1.2604 11 6 1.4038 -2.7827 2.4699 12 6 1.7550 -2.1592 3.6654 13 6 1.6222 -2.8282 4.8707 14 6 1.1513 -4.1217 4.8995 15 6 0.7977 -4.7664 3.6994 16 6 0.3138 -6.0949 3.7212 17 1 0.4135 -6.7204 2.8465 18 6 -0.2942 -6.5991 4.8763 19 7 -0.7319 -5.7787 5.7965 20 14 -0.4809 -8.4438 5.1043 21 1 0.8601 -9.0816 5.0972 22 1 -1.1515 -8.7169 6.4008 23 1 -1.2992 -8.9992 3.9965 24 6 0.9295 -4.0816 2.4785 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.6644 -1.6354 -1.2424 29 1 3.8404 0.3529 -1.2533 30 1 3.8171 -1.1704 -2.1736 31 1 5.1437 -1.3952 -0.0832 32 1 3.7127 -2.4540 -0.0591 33 1 3.9458 0.2868 1.2671 34 1 3.9379 -1.2857 2.1025 35 1 1.2965 -2.5316 0.4272 36 1 2.1291 -1.1461 3.6525 37 1 1.8933 -2.3344 5.7921 38 1 1.0539 -4.6409 5.8415 39 1 -1.1538 -6.1282 6.5971 40 1 0.6620 -4.5677 1.5520 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396717632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:08 Heat of formation + Delta-G solvation = 10.826402 kcal Electronic energy + Delta-G solvation = -19626.906543 eV Core-core repulsion = 16826.158523 eV Total energy + Delta-G solvation = -2800.748019 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.65328 -37.33862 -34.43954 -32.95140 -32.52758 -30.57141 -29.67975 -27.45066 -26.26699 -25.16102 -23.24767 -21.63355 -20.84237 -20.64292 -19.13925 -17.27368 -15.98558 -15.73691 -15.33642 -15.03094 -14.57127 -14.38192 -14.07519 -13.59658 -13.24387 -12.83038 -12.66268 -12.29511 -12.06838 -11.95354 -11.86818 -11.57191 -11.31188 -11.18134 -11.07038 -10.96380 -10.70327 -10.66805 -10.41449 -10.34741 -9.73797 -9.29948 -9.18963 -8.76568 -8.31221 -7.37739 -6.70240 -6.19579 -4.30227 2.87844 3.09373 3.12318 3.23715 3.38419 3.96442 4.04832 4.38213 4.72287 4.87484 4.93025 5.05238 5.12525 5.33425 5.46561 5.57151 5.74971 5.81180 5.85572 5.89200 5.93640 6.04509 6.15218 6.29962 6.31848 6.34568 6.39309 6.56771 6.98152 7.04235 7.10062 7.12560 7.32045 7.36130 7.40058 7.79830 7.91888 8.15075 8.26226 8.51763 8.61889 8.79769 9.00826 9.13020 10.25663 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.032642 B = 0.004630 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.587586 B = 6045.844359 C = 6162.891636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.077 3.923 3 H 0.084 0.916 4 N -0.680 5.680 5 C 0.058 3.942 6 C -0.153 4.153 7 C -0.135 4.135 8 C 0.129 3.871 9 H 0.078 0.922 10 N -0.751 5.751 11 C 0.228 3.772 12 C -0.301 4.301 13 C -0.075 4.075 14 C -0.200 4.200 15 C 0.142 3.858 16 C -0.465 4.465 17 H 0.074 0.926 18 C 0.078 3.922 19 N -0.792 5.792 20 Si 0.906 3.094 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.290 4.290 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.338 0.662 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.382 0.618 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.279 0.721 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.886 8.170 -8.490 12.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.033 4.033 3 H 0.102 0.898 4 N -0.310 5.310 5 C -0.072 4.072 6 C -0.192 4.192 7 C -0.174 4.174 8 C 0.020 3.980 9 H 0.096 0.904 10 N -0.384 5.384 11 C 0.130 3.870 12 C -0.324 4.324 13 C -0.094 4.094 14 C -0.220 4.220 15 C 0.139 3.861 16 C -0.495 4.495 17 H 0.092 0.908 18 C -0.139 4.139 19 N -0.417 5.417 20 Si 0.730 3.270 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.314 4.314 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.157 0.843 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.215 0.785 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.131 0.869 39 H 0.090 0.910 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.729 8.904 -8.604 13.255 hybrid contribution 0.051 -1.650 0.685 1.787 sum 4.780 7.254 -7.919 11.755 Atomic orbital electron populations 1.21746 0.93894 1.02724 1.01579 1.21838 0.95834 0.97920 0.87713 0.89766 1.60794 1.08678 1.22341 1.39206 1.22009 0.87563 1.00492 0.97143 1.22151 1.00516 1.00635 0.95904 1.22040 0.96914 1.00064 0.98365 1.21322 0.92636 0.85065 0.98950 0.90423 1.44388 1.75082 1.12863 1.06108 1.17424 0.94001 0.90970 0.84593 1.19861 1.20849 0.99955 0.91753 1.20439 0.98629 0.95213 0.95163 1.21162 1.06934 0.95045 0.98885 1.17324 0.86442 0.91986 0.90360 1.19512 1.34023 0.97458 0.98531 0.90751 1.25883 0.93090 0.99888 0.95075 1.69853 1.27269 1.36634 1.07948 0.86422 0.79405 0.82961 0.78204 1.18902 1.20396 1.19097 1.20372 1.19248 0.94122 0.97674 0.92124 0.92335 0.92098 0.84335 0.91248 0.91081 0.92120 0.91498 0.92322 0.91107 0.78466 0.89700 0.89804 0.86866 0.90995 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.30 37.16 0.35 -1.38 16 2 C 0.08 0.93 2.80 -67.72 -0.19 0.74 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 4 N -0.68 -7.84 6.49 -106.76 -0.69 -8.53 16 5 C 0.06 0.61 6.55 -3.83 -0.03 0.59 16 6 C -0.15 -1.85 5.91 -26.65 -0.16 -2.01 16 7 C -0.13 -1.82 5.61 -26.61 -0.15 -1.97 16 8 C 0.13 1.84 1.95 -67.85 -0.13 1.71 16 9 H 0.08 1.23 6.48 -51.93 -0.34 0.89 16 10 N -0.75 -12.75 3.87 -52.14 -0.20 -12.95 16 11 C 0.23 5.01 6.63 -83.86 -0.56 4.46 16 12 C -0.30 -6.77 8.87 -39.08 -0.35 -7.12 16 13 C -0.08 -1.82 10.02 -39.69 -0.40 -2.21 16 14 C -0.20 -5.34 8.70 -38.83 -0.34 -5.67 16 15 C 0.14 3.86 5.57 -106.85 -0.60 3.26 16 16 C -0.47 -12.60 9.05 -37.74 -0.34 -12.94 16 17 H 0.07 1.94 7.91 -52.49 -0.41 1.53 16 18 C 0.08 2.01 5.14 -17.34 -0.09 1.92 16 19 N -0.79 -20.89 10.96 55.55 0.61 -20.28 16 20 Si 0.91 18.96 29.60 -169.99 -5.03 13.93 16 21 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 C -0.29 -7.17 9.63 -38.67 -0.37 -7.54 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 27 H 0.06 0.82 7.40 -51.93 -0.38 0.44 16 28 H 0.34 3.99 7.23 -39.29 -0.28 3.70 16 29 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.93 7.73 -51.93 -0.40 0.53 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.13 7.76 -51.93 -0.40 0.73 16 35 H 0.38 6.07 6.86 -40.82 -0.28 5.79 16 36 H 0.08 1.73 6.13 -52.49 -0.32 1.41 16 37 H 0.08 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.11 3.13 6.15 -52.49 -0.32 2.80 16 39 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 40 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 312.99 15.07 4.72 4.72 Total: -1.00 -27.33 312.99 -10.03 -37.36 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -6.09 Total: 13.92 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: -3.34 Total: -28.17 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: -0.29 Total: -41.76 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.33 -10.03 -37.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396717632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.189 kcal (2) G-P(sol) polarization free energy of solvation -27.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds