Wall clock time and date at job start Mon Mar 30 2020 06:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46154 * 2 1 4 4 N 1.46843 * 109.45629 * 240.02167 * 2 1 3 5 5 C 1.46846 * 111.19907 * 178.24973 * 4 2 1 6 6 C 1.53036 * 109.52537 * 61.73990 * 5 4 2 7 7 C 1.53113 * 109.28045 * 300.82349 * 6 5 4 8 8 C 1.53035 * 109.46133 * 119.97511 * 2 1 3 9 9 H 1.09003 * 109.50484 * 299.12737 * 8 2 1 10 10 N 1.46497 * 109.50554 * 59.24190 * 8 2 1 11 11 C 1.39684 * 120.00459 * 205.00000 * 10 8 2 12 12 C 1.39335 * 119.94791 * 359.72488 * 11 10 8 13 13 C 1.38485 * 120.42211 * 179.75896 * 12 11 10 14 14 C 1.37688 * 120.32462 * 0.51668 * 13 12 11 15 15 C 1.40751 * 119.89295 * 359.74404 * 14 13 12 16 16 C 1.41404 * 120.20963 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00647 * 204.47495 * 16 15 14 18 18 C 1.39939 * 119.99442 * 24.47727 * 16 15 14 19 19 N 1.30825 * 120.00281 * 17.86610 * 18 16 15 20 20 Si 1.86806 * 119.99753 * 197.86768 * 18 16 15 21 21 H 1.48497 * 109.47033 * 59.99950 * 20 18 16 22 22 H 1.48498 * 109.47157 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47042 * 300.00124 * 20 18 16 24 24 C 1.38280 * 119.95191 * 180.02562 * 11 10 8 25 25 H 1.08996 * 109.47072 * 300.00964 * 1 2 3 26 26 H 1.09008 * 109.46701 * 60.00295 * 1 2 3 27 27 H 1.08998 * 109.47192 * 180.02562 * 1 2 3 28 28 H 1.00896 * 111.00133 * 302.34495 * 4 2 1 29 29 H 1.09008 * 109.46333 * 301.72240 * 5 4 2 30 30 H 1.09000 * 109.45773 * 181.75635 * 5 4 2 31 31 H 1.08997 * 109.50503 * 180.87807 * 6 5 4 32 32 H 1.08999 * 109.53242 * 60.78059 * 6 5 4 33 33 H 1.09004 * 109.52241 * 297.75171 * 7 6 5 34 34 H 1.09000 * 109.57493 * 177.58724 * 7 6 5 35 35 H 0.97003 * 119.99451 * 25.00411 * 10 8 2 36 36 H 1.08000 * 119.78818 * 0.02562 * 12 11 10 37 37 H 1.07997 * 119.83804 * 180.25861 * 13 12 11 38 38 H 1.07996 * 120.04982 * 179.71397 * 14 13 12 39 39 H 0.97006 * 120.00122 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.16526 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 7 2.0191 -0.6918 -1.1993 5 6 3.4863 -0.6780 -1.2591 6 6 4.0546 -1.4191 -0.0467 7 6 3.5710 -0.7363 1.2355 8 6 2.0399 -0.7209 1.2499 9 1 1.6896 -0.1981 2.1399 10 7 1.5370 -2.0968 1.2604 11 6 1.4038 -2.7827 2.4699 12 6 1.7550 -2.1592 3.6654 13 6 1.6222 -2.8282 4.8707 14 6 1.1513 -4.1217 4.8995 15 6 0.7977 -4.7664 3.6994 16 6 0.3138 -6.0949 3.7212 17 1 0.4135 -6.7204 2.8465 18 6 -0.2942 -6.5991 4.8763 19 7 -0.7319 -5.7787 5.7965 20 14 -0.4809 -8.4438 5.1043 21 1 0.8601 -9.0816 5.0972 22 1 -1.1515 -8.7169 6.4008 23 1 -1.2992 -8.9992 3.9965 24 6 0.9295 -4.0816 2.4785 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.6644 -1.6354 -1.2424 29 1 3.8404 0.3529 -1.2533 30 1 3.8171 -1.1704 -2.1736 31 1 5.1437 -1.3952 -0.0832 32 1 3.7127 -2.4540 -0.0591 33 1 3.9458 0.2868 1.2671 34 1 3.9379 -1.2857 2.1025 35 1 1.2965 -2.5316 0.4272 36 1 2.1291 -1.1461 3.6525 37 1 1.8933 -2.3344 5.7921 38 1 1.0539 -4.6409 5.8415 39 1 -1.1538 -6.1282 6.5971 40 1 0.6620 -4.5677 1.5520 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396717632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:08 Heat of formation + Delta-G solvation = -4.960969 kcal Electronic energy + Delta-G solvation = -19627.591135 eV Core-core repulsion = 16826.158523 eV Total energy + Delta-G solvation = -2801.432611 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.84867 -39.06769 -36.10413 -34.57689 -33.56792 -31.95646 -31.51285 -28.94657 -27.51990 -27.06786 -24.29718 -22.93042 -22.48844 -22.20061 -20.50489 -19.05239 -17.48339 -17.29320 -16.69123 -16.24287 -16.21084 -15.75159 -15.25100 -14.94984 -14.73353 -14.31398 -14.09845 -13.91075 -13.64960 -13.20220 -13.05495 -12.95094 -12.80621 -12.76573 -12.50611 -12.19522 -12.11969 -12.02650 -11.72808 -11.63058 -11.50083 -11.18145 -11.01414 -10.44878 -9.34789 -9.30771 -8.61216 -7.91393 -6.32915 1.05275 1.34689 1.38420 1.49518 1.60329 2.21827 2.71187 2.80488 3.33689 3.81107 3.84355 3.95195 4.01863 4.13680 4.34843 4.45962 4.51438 4.57390 4.69808 4.78209 4.84079 4.88695 4.98145 5.04906 5.13286 5.15462 5.16097 5.21893 5.23172 5.33357 5.38029 5.43164 5.59003 5.94246 6.01435 6.09515 6.20144 6.31441 6.38212 6.62445 6.89665 7.01473 7.03911 7.24112 8.36753 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.032642 B = 0.004630 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.587586 B = 6045.844359 C = 6162.891636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.087 3.913 3 H 0.103 0.897 4 N -0.679 5.679 5 C 0.062 3.938 6 C -0.148 4.148 7 C -0.132 4.132 8 C 0.125 3.875 9 H 0.067 0.933 10 N -0.737 5.737 11 C 0.242 3.758 12 C -0.301 4.301 13 C -0.076 4.076 14 C -0.234 4.234 15 C 0.113 3.887 16 C -0.504 4.504 17 H 0.071 0.929 18 C 0.037 3.963 19 N -0.824 5.824 20 Si 0.981 3.019 21 H -0.262 1.262 22 H -0.266 1.266 23 H -0.259 1.259 24 C -0.312 4.312 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.336 0.664 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.388 0.612 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.287 0.713 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.524 9.334 -9.826 14.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 H 0.121 0.879 4 N -0.308 5.308 5 C -0.067 4.067 6 C -0.188 4.188 7 C -0.171 4.171 8 C 0.018 3.982 9 H 0.085 0.915 10 N -0.369 5.369 11 C 0.140 3.860 12 C -0.324 4.324 13 C -0.095 4.095 14 C -0.255 4.255 15 C 0.110 3.890 16 C -0.534 4.534 17 H 0.089 0.911 18 C -0.178 4.178 19 N -0.449 5.449 20 Si 0.801 3.199 21 H -0.186 1.186 22 H -0.191 1.191 23 H -0.184 1.184 24 C -0.337 4.337 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.154 0.846 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.223 0.777 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.379 10.109 -9.983 15.192 hybrid contribution -0.097 -1.843 1.019 2.108 sum 5.282 8.266 -8.965 13.289 Atomic orbital electron populations 1.21722 0.94050 1.01748 1.02183 1.21797 0.95640 0.98418 0.86490 0.87897 1.60831 1.09383 1.22173 1.38460 1.22055 0.86680 1.01208 0.96792 1.22119 1.01346 0.99361 0.95950 1.21995 0.95857 1.01229 0.97992 1.21554 0.93429 0.83241 1.00019 0.91494 1.44401 1.73993 1.13799 1.04730 1.17444 0.91941 0.90224 0.86343 1.20132 1.20105 1.00889 0.91285 1.20718 0.97542 0.94437 0.96830 1.21082 1.09826 0.96440 0.98108 1.17690 0.87099 0.92736 0.91463 1.19773 1.35869 0.98116 0.99622 0.91074 1.26749 0.92057 1.04809 0.94179 1.69915 1.27655 1.38846 1.08522 0.85285 0.79464 0.76447 0.78660 1.18615 1.19069 1.18360 1.20479 1.20655 0.95465 0.97054 0.92334 0.90967 0.93825 0.84621 0.89825 0.89784 0.90907 0.93714 0.89939 0.93857 0.77687 0.87217 0.87733 0.88765 0.90287 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.30 71.98 0.67 -2.43 16 2 C 0.09 1.85 2.80 44.94 0.13 1.98 16 3 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 4 N -0.68 -13.67 6.49 -491.68 -3.19 -16.86 16 5 C 0.06 1.11 6.55 86.33 0.57 1.67 16 6 C -0.15 -3.24 5.91 30.64 0.18 -3.06 16 7 C -0.13 -3.25 5.61 30.67 0.17 -3.07 16 8 C 0.13 3.32 1.95 45.04 0.09 3.41 16 9 H 0.07 1.97 6.48 -2.39 -0.02 1.95 16 10 N -0.74 -24.36 3.87 -318.87 -1.23 -25.59 16 11 C 0.24 10.62 6.63 38.16 0.25 10.87 16 12 C -0.30 -13.40 8.87 22.59 0.20 -13.20 16 13 C -0.08 -3.72 10.02 22.20 0.22 -3.50 16 14 C -0.23 -12.98 8.70 22.75 0.20 -12.78 16 15 C 0.11 6.41 5.57 -21.31 -0.12 6.29 16 16 C -0.50 -28.43 9.05 23.46 0.21 -28.22 16 17 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 18 C 0.04 1.94 5.14 85.25 0.44 2.38 16 19 N -0.82 -44.81 10.96 21.82 0.24 -44.57 16 20 Si 0.98 39.49 29.60 68.60 2.03 41.52 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 22 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 23 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 24 C -0.31 -15.88 9.63 22.86 0.22 -15.66 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.04 1.11 7.40 -2.39 -0.02 1.09 16 28 H 0.34 7.18 7.23 -89.70 -0.65 6.53 16 29 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.18 7.73 -2.39 -0.02 1.16 16 33 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.04 1.31 7.76 -2.39 -0.02 1.29 16 35 H 0.39 12.03 6.86 -92.71 -0.64 11.40 16 36 H 0.11 4.30 6.13 -2.91 -0.02 4.28 16 37 H 0.10 4.53 8.06 -2.91 -0.02 4.50 16 38 H 0.09 5.48 6.15 -2.91 -0.02 5.46 16 39 H 0.29 14.09 8.30 -92.70 -0.77 13.32 16 40 H 0.09 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -60.82 312.99 1.03 -59.79 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: -0.24 Total: 41.02 kcal Atomic # 6 Polarization: -58.74 SS G_CDS: 3.43 Total: -55.31 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -4.19 Total: -87.02 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -60.82 1.03 -59.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396717632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.833 kcal (2) G-P(sol) polarization free energy of solvation -60.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds