Wall clock time and date at job start Mon Mar 30 2020 06:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.45559 * 2 1 4 4 N 1.46842 * 109.46004 * 119.97791 * 2 1 3 5 5 C 1.46847 * 111.19743 * 181.75602 * 4 2 1 6 6 C 1.53032 * 109.52307 * 298.25577 * 5 4 2 7 7 C 1.53120 * 109.27889 * 59.17789 * 6 5 4 8 8 C 1.53043 * 109.46023 * 240.02761 * 2 1 3 9 9 H 1.09002 * 109.50349 * 300.78617 * 8 2 1 10 10 N 1.46496 * 109.50238 * 60.86629 * 8 2 1 11 11 C 1.39687 * 119.99830 * 204.99975 * 10 8 2 12 12 C 1.39337 * 119.95119 * 0.02562 * 11 10 8 13 13 C 1.38472 * 120.42131 * 180.02562 * 12 11 10 14 14 C 1.37683 * 120.33100 * 359.97438 * 13 12 11 15 15 C 1.40756 * 119.88992 * 0.02562 * 14 13 12 16 16 C 1.41411 * 120.20642 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99739 * 204.49110 * 16 15 14 18 18 C 1.39925 * 119.99740 * 24.77218 * 16 15 14 19 19 N 1.30826 * 120.00340 * 17.45619 * 18 16 15 20 20 Si 1.86801 * 119.99902 * 197.45155 * 18 16 15 21 21 H 1.48501 * 109.47079 * 59.99802 * 20 18 16 22 22 H 1.48497 * 109.47237 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47165 * 300.00228 * 20 18 16 24 24 C 1.38286 * 119.94984 * 180.30250 * 11 10 8 25 25 H 1.08994 * 109.47450 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47296 * 299.97456 * 1 2 3 27 27 H 1.09000 * 109.47182 * 59.96917 * 1 2 3 28 28 H 1.00901 * 110.99941 * 305.85124 * 4 2 1 29 29 H 1.09004 * 109.46289 * 58.26993 * 5 4 2 30 30 H 1.09001 * 109.46557 * 178.24627 * 5 4 2 31 31 H 1.09001 * 109.50744 * 179.11845 * 6 5 4 32 32 H 1.08997 * 109.50779 * 299.19875 * 6 5 4 33 33 H 1.09005 * 109.52427 * 182.43618 * 7 6 5 34 34 H 1.09003 * 109.52243 * 62.25507 * 7 6 5 35 35 H 0.96995 * 120.00444 * 25.00012 * 10 8 2 36 36 H 1.08002 * 119.78568 * 0.04244 * 12 11 10 37 37 H 1.08008 * 119.83650 * 179.97438 * 13 12 11 38 38 H 1.08003 * 120.05911 * 179.97438 * 14 13 12 39 39 H 0.97006 * 120.00218 * 180.02562 * 19 18 16 40 40 H 1.07991 * 120.16163 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 7 2.0192 -0.6918 1.1993 5 6 3.4864 -0.6778 1.2590 6 6 4.0546 -1.4189 0.0467 7 6 3.5708 -0.7361 -1.2356 8 6 2.0399 -0.7209 -1.2500 9 1 1.6652 -1.7445 -1.2581 10 7 1.5689 -0.0183 -2.4461 11 6 1.4356 -0.7074 -3.6538 12 6 1.7504 -2.0631 -3.7196 13 6 1.6224 -2.7556 -4.9119 14 6 1.1818 -2.1115 -6.0462 15 6 0.8601 -0.7422 -5.9951 16 6 0.4064 -0.0741 -7.1559 17 1 0.5330 0.9944 -7.2482 18 6 -0.2118 -0.7967 -8.1824 19 7 -0.6785 -1.9964 -7.9486 20 14 -0.3709 -0.0485 -9.8866 21 1 0.9807 0.2524 -10.4232 22 1 -1.0590 -1.0086 -10.7865 23 1 -1.1613 1.2060 -9.8045 24 6 0.9970 -0.0417 -4.7838 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5134 0.8902 27 1 -0.3633 0.5143 -0.8897 28 1 1.6195 -0.2926 2.0353 29 1 3.8403 0.3531 1.2531 30 1 3.8174 -1.1702 2.1734 31 1 5.1438 -1.3949 0.0831 32 1 3.7129 -2.4538 0.0597 33 1 3.9379 -1.2863 -2.1021 34 1 3.9457 0.2870 -1.2673 35 1 1.3496 0.9254 -2.3995 36 1 2.0962 -2.5771 -2.8349 37 1 1.8695 -3.8063 -4.9523 38 1 1.0840 -2.6558 -6.9739 39 1 -1.1067 -2.4975 -8.6603 40 1 0.7566 1.0100 -4.7349 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396717633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:11 Heat of formation + Delta-G solvation = -6.564066 kcal Electronic energy + Delta-G solvation = -19377.124992 eV Core-core repulsion = 16575.622865 eV Total energy + Delta-G solvation = -2801.502127 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.52331 -39.06555 -36.32849 -34.81018 -33.70498 -31.88923 -31.55070 -28.89147 -27.46980 -27.05477 -24.25372 -23.03050 -22.40308 -21.85914 -20.62311 -19.18283 -17.55928 -17.34680 -16.76934 -16.36148 -15.90516 -15.64040 -15.17556 -15.03333 -14.84429 -14.45060 -14.20962 -13.94282 -13.64260 -13.27217 -13.11013 -13.07344 -12.83647 -12.73730 -12.54133 -12.22720 -11.96896 -11.81873 -11.80102 -11.62662 -11.29041 -11.17217 -11.00948 -10.40683 -9.40767 -9.32860 -8.59645 -7.92407 -6.31654 1.06446 1.35650 1.39538 1.50857 1.61403 2.23171 2.64661 2.81750 3.35625 3.72930 3.82741 3.93951 4.07466 4.19907 4.28168 4.43103 4.50108 4.56780 4.71003 4.72775 4.83457 4.90715 4.96007 4.98106 5.09676 5.15547 5.17302 5.23191 5.26386 5.31910 5.42829 5.44524 5.61122 5.93351 6.01968 6.07840 6.21489 6.32704 6.51851 6.64202 6.90594 7.02951 7.05781 7.26486 8.38495 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.040396 B = 0.004253 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.977043 B = 6582.616854 C = 6811.505527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.089 3.911 3 H 0.044 0.956 4 N -0.688 5.688 5 C 0.060 3.940 6 C -0.113 4.113 7 C -0.134 4.134 8 C 0.168 3.832 9 H 0.062 0.938 10 N -0.744 5.744 11 C 0.240 3.760 12 C -0.302 4.302 13 C -0.076 4.076 14 C -0.232 4.232 15 C 0.114 3.886 16 C -0.504 4.504 17 H 0.072 0.928 18 C 0.037 3.963 19 N -0.824 5.824 20 Si 0.982 3.018 21 H -0.261 1.261 22 H -0.267 1.267 23 H -0.259 1.259 24 C -0.312 4.312 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.356 0.644 29 H 0.035 0.965 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.393 0.607 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.287 0.713 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 3.275 14.928 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 H 0.062 0.938 4 N -0.322 5.322 5 C -0.069 4.069 6 C -0.151 4.151 7 C -0.173 4.173 8 C 0.062 3.938 9 H 0.080 0.920 10 N -0.376 5.376 11 C 0.139 3.861 12 C -0.325 4.325 13 C -0.095 4.095 14 C -0.253 4.253 15 C 0.111 3.889 16 C -0.534 4.534 17 H 0.090 0.910 18 C -0.178 4.178 19 N -0.450 5.450 20 Si 0.802 3.198 21 H -0.186 1.186 22 H -0.191 1.191 23 H -0.184 1.184 24 C -0.336 4.336 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.177 0.823 29 H 0.053 0.947 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.227 0.773 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.237 2.321 14.689 15.767 hybrid contribution -0.182 1.328 -0.837 1.581 sum 5.055 3.649 13.852 15.190 Atomic orbital electron populations 1.21755 0.93807 1.02159 1.02077 1.21491 0.95637 0.95014 0.90042 0.93790 1.60165 1.07969 1.59632 1.04421 1.21974 0.86970 0.98956 0.99024 1.21562 1.00684 0.99724 0.93161 1.22058 0.96043 1.00738 0.98447 1.20727 0.93115 0.96138 0.83783 0.92040 1.44454 1.75509 1.11265 1.06339 1.17452 0.92122 0.91181 0.85328 1.20133 1.20682 0.93574 0.98070 1.20711 0.97583 0.98065 0.93116 1.21088 1.10073 0.96212 0.97922 1.17689 0.86976 0.92345 0.91915 1.19784 1.35949 0.95695 1.01948 0.90959 1.26754 0.91998 0.94824 1.04253 1.69919 1.27059 1.12522 1.35497 0.85272 0.79480 0.79025 0.75991 1.18556 1.19107 1.18366 1.20503 1.21119 0.99117 0.92869 0.93079 0.90746 0.92854 0.82345 0.94680 0.88713 0.89979 0.91900 0.93396 0.92315 0.77265 0.87524 0.87678 0.88641 0.90284 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.28 71.98 0.67 -2.56 16 2 C 0.09 2.03 2.61 44.94 0.12 2.14 16 3 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 4 N -0.69 -13.12 6.50 -491.68 -3.20 -16.32 16 5 C 0.06 1.01 6.55 86.32 0.57 1.57 16 6 C -0.11 -2.34 6.09 30.65 0.19 -2.15 16 7 C -0.13 -3.61 5.53 30.67 0.17 -3.45 16 8 C 0.17 4.96 1.74 45.04 0.08 5.04 16 9 H 0.06 2.11 6.47 -2.39 -0.02 2.09 16 10 N -0.74 -26.17 4.57 -318.87 -1.46 -27.63 16 11 C 0.24 10.91 6.63 38.17 0.25 11.17 16 12 C -0.30 -13.91 8.90 22.59 0.20 -13.71 16 13 C -0.08 -3.77 10.01 22.19 0.22 -3.55 16 14 C -0.23 -13.02 8.69 22.75 0.20 -12.82 16 15 C 0.11 6.49 5.57 -21.31 -0.12 6.37 16 16 C -0.50 -28.54 9.05 23.46 0.21 -28.32 16 17 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 18 C 0.04 1.92 5.14 85.25 0.44 2.36 16 19 N -0.82 -45.03 10.95 21.82 0.24 -44.79 16 20 Si 0.98 39.58 29.59 68.60 2.03 41.61 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 22 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 23 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 24 C -0.31 -16.08 9.63 22.86 0.22 -15.86 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.05 1.37 7.51 -2.39 -0.02 1.36 16 28 H 0.36 5.18 8.79 -89.69 -0.79 4.39 16 29 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.52 7.72 -2.38 -0.02 1.51 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.39 12.65 8.45 -92.71 -0.78 11.87 16 36 H 0.11 4.44 6.06 -2.91 -0.02 4.43 16 37 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 38 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16 39 H 0.29 14.15 8.30 -92.70 -0.77 13.38 16 40 H 0.09 4.46 8.06 -2.92 -0.02 4.44 16 Total: -1.00 -62.55 316.98 0.49 -62.06 By element: Atomic # 1 Polarization: 39.37 SS G_CDS: -0.53 Total: 38.83 kcal Atomic # 6 Polarization: -57.17 SS G_CDS: 3.41 Total: -53.76 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -4.42 Total: -88.74 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -62.55 0.49 -62.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396717633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.495 kcal (2) G-P(sol) polarization free energy of solvation -62.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds