Wall clock time and date at job start Mon Mar 30 2020 06:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.45215 * 2 1 4 4 N 1.46840 * 109.46529 * 240.02444 * 2 1 3 5 5 C 1.46847 * 111.20161 * 178.24520 * 4 2 1 6 6 C 1.53041 * 109.52239 * 61.73907 * 5 4 2 7 7 C 1.53120 * 109.28037 * 300.82317 * 6 5 4 8 8 C 1.53042 * 109.45776 * 119.97111 * 2 1 3 9 9 H 1.09000 * 109.53757 * 59.23673 * 8 2 1 10 10 N 1.46503 * 109.50540 * 299.13608 * 8 2 1 11 11 C 1.39674 * 119.99684 * 155.19964 * 10 8 2 12 12 C 1.39330 * 119.95811 * 0.02562 * 11 10 8 13 13 C 1.38481 * 120.42923 * 179.97438 * 12 11 10 14 14 C 1.37687 * 120.32201 * 359.74275 * 13 12 11 15 15 C 1.40749 * 119.89174 * 0.51315 * 14 13 12 16 16 C 1.41410 * 120.20637 * 179.76527 * 15 14 13 17 17 H 1.08002 * 119.99963 * 155.64263 * 16 15 14 18 18 C 1.39934 * 120.00077 * 335.36877 * 16 15 14 19 19 N 1.30828 * 119.99733 * 342.27000 * 18 16 15 20 20 Si 1.86795 * 119.99928 * 162.27003 * 18 16 15 21 21 H 1.48499 * 109.47324 * 60.00250 * 20 18 16 22 22 H 1.48508 * 109.47202 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47267 * 299.99741 * 20 18 16 24 24 C 1.38284 * 119.94698 * 179.97438 * 11 10 8 25 25 H 1.08997 * 109.46931 * 300.02642 * 1 2 3 26 26 H 1.08996 * 109.46793 * 60.02939 * 1 2 3 27 27 H 1.08996 * 109.47188 * 180.02562 * 1 2 3 28 28 H 1.00900 * 111.00289 * 54.14306 * 4 2 1 29 29 H 1.09005 * 109.45838 * 301.72701 * 5 4 2 30 30 H 1.08996 * 109.45331 * 181.75207 * 5 4 2 31 31 H 1.08997 * 109.50163 * 180.87839 * 6 5 4 32 32 H 1.09003 * 109.53158 * 60.78543 * 6 5 4 33 33 H 1.08999 * 109.52000 * 297.75130 * 7 6 5 34 34 H 1.08994 * 109.52056 * 177.55858 * 7 6 5 35 35 H 0.96997 * 119.99875 * 335.19663 * 10 8 2 36 36 H 1.08001 * 119.78438 * 0.02562 * 12 11 10 37 37 H 1.07995 * 119.83997 * 179.97438 * 13 12 11 38 38 H 1.07999 * 120.05395 * 180.27386 * 14 13 12 39 39 H 0.97006 * 119.99686 * 179.97438 * 19 18 16 40 40 H 1.07993 * 120.16416 * 0.04697 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 7 2.0194 -0.6917 -1.1993 5 6 3.4866 -0.6777 -1.2590 6 6 4.0548 -1.4188 -0.0465 7 6 3.5710 -0.7360 1.2358 8 6 2.0399 -0.7209 1.2501 9 1 1.6659 -1.7447 1.2585 10 7 1.5688 -0.0183 2.4462 11 6 1.4396 -0.7064 3.6548 12 6 1.7593 -2.0608 3.7219 13 6 1.6353 -2.7525 4.9152 14 6 1.1992 -2.1072 6.0506 15 6 0.8673 -0.7404 5.9969 16 6 0.4140 -0.0722 7.1578 17 1 0.5313 0.9978 7.2455 18 6 -0.1917 -0.7966 8.1905 19 7 -0.6534 -1.9993 7.9624 20 14 -0.3411 -0.0464 9.8947 21 1 -1.1393 1.2033 9.8171 22 1 -1.0153 -1.0095 10.8022 23 1 1.0131 0.2628 10.4199 24 6 0.9954 -0.0421 4.7833 25 1 -0.3633 0.5142 0.8897 26 1 -0.3633 0.5134 -0.8902 27 1 -0.3633 -1.0276 0.0005 28 1 1.6197 -0.2926 -2.0354 29 1 3.8404 0.3533 -1.2531 30 1 3.8174 -1.1701 -2.1734 31 1 5.1439 -1.3948 -0.0829 32 1 3.7131 -2.4538 -0.0589 33 1 3.9457 0.2870 1.2673 34 1 3.9379 -1.2863 2.1021 35 1 1.3468 0.9248 2.3988 36 1 2.1069 -2.5745 2.8377 37 1 1.8853 -3.8023 4.9563 38 1 1.1083 -2.6497 6.9799 39 1 -1.0729 -2.5017 8.6784 40 1 0.7473 1.0078 4.7326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396717634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:15 Heat of formation + Delta-G solvation = 10.422291 kcal Electronic energy + Delta-G solvation = -19376.212690 eV Core-core repulsion = 16575.447147 eV Total energy + Delta-G solvation = -2800.765543 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.27548 -37.37022 -34.71037 -33.07703 -32.68181 -30.45451 -29.65936 -27.41394 -26.20151 -25.12277 -23.08359 -21.70274 -20.78874 -20.18629 -19.37218 -17.33831 -16.40286 -15.57052 -15.18802 -14.82886 -14.65981 -14.17944 -13.98579 -13.83332 -13.52809 -12.75690 -12.65698 -12.33917 -12.08785 -12.03365 -11.87189 -11.65021 -11.33802 -11.06007 -11.02233 -10.79957 -10.69657 -10.41327 -10.39449 -10.23566 -9.68504 -9.25681 -9.14608 -8.68600 -8.52451 -7.33565 -6.67007 -6.15304 -4.26674 2.90856 3.11324 3.14362 3.27433 3.42155 3.88255 4.00595 4.46119 4.75445 4.80868 4.93670 5.03919 5.17356 5.31153 5.39155 5.59717 5.66411 5.83266 5.86175 5.91164 5.92783 6.05373 6.11756 6.31710 6.38432 6.41226 6.49323 6.65776 6.91838 7.08900 7.14832 7.16033 7.28144 7.39553 7.45522 7.84616 7.96487 8.19274 8.30615 8.56019 8.69040 8.83895 9.04441 9.17269 10.29025 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.040406 B = 0.004252 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.800702 B = 6582.944727 C = 6813.158361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.079 3.921 3 H 0.035 0.965 4 N -0.683 5.683 5 C 0.058 3.942 6 C -0.116 4.116 7 C -0.137 4.137 8 C 0.171 3.829 9 H 0.083 0.917 10 N -0.756 5.756 11 C 0.228 3.772 12 C -0.300 4.300 13 C -0.075 4.075 14 C -0.200 4.200 15 C 0.142 3.858 16 C -0.466 4.466 17 H 0.074 0.926 18 C 0.078 3.922 19 N -0.792 5.792 20 Si 0.905 3.095 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.291 4.291 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.341 0.659 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.385 0.615 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.279 0.721 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.770 2.563 -13.273 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.031 4.031 3 H 0.053 0.947 4 N -0.315 5.315 5 C -0.071 4.071 6 C -0.155 4.155 7 C -0.177 4.177 8 C 0.064 3.936 9 H 0.101 0.899 10 N -0.388 5.388 11 C 0.130 3.870 12 C -0.323 4.323 13 C -0.094 4.094 14 C -0.221 4.221 15 C 0.139 3.861 16 C -0.496 4.496 17 H 0.092 0.908 18 C -0.139 4.139 19 N -0.418 5.418 20 Si 0.730 3.270 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.189 1.189 24 C -0.314 4.314 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.159 0.841 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.218 0.782 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.131 0.869 39 H 0.090 0.910 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.653 1.594 -12.966 13.867 hybrid contribution -0.042 1.583 0.493 1.658 sum 4.611 3.177 -12.473 13.672 Atomic orbital electron populations 1.21793 0.93857 1.02943 1.01490 1.21670 0.95694 0.95000 0.90714 0.94672 1.60222 1.07170 1.59639 1.04497 1.21931 0.87738 0.98464 0.98951 1.21569 0.99493 1.00382 0.94031 1.22130 0.97217 1.00555 0.97752 1.20580 0.92233 0.97153 0.83623 0.89913 1.44424 1.76510 1.10999 1.06892 1.17423 0.94075 0.91162 0.84347 1.19894 1.21218 0.93304 0.97892 1.20441 0.98674 0.96944 0.93348 1.21161 1.07322 0.96007 0.97563 1.17320 0.86358 0.91667 0.90769 1.19512 1.34558 0.95306 1.00227 0.90769 1.25876 0.93030 0.94513 1.00511 1.69859 1.26952 1.11091 1.33853 0.86428 0.79389 0.79672 0.81513 1.19138 1.20423 1.18907 1.20387 1.19680 0.98913 0.92460 0.91391 0.93320 0.91659 0.84091 0.95502 0.90963 0.91756 0.91089 0.92682 0.90903 0.78241 0.89529 0.89755 0.86871 0.91027 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.28 37.16 0.35 -1.43 16 2 C 0.08 1.00 2.61 -67.72 -0.18 0.83 16 3 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 4 N -0.68 -7.59 6.50 -106.76 -0.69 -8.28 16 5 C 0.06 0.60 6.55 -3.83 -0.03 0.57 16 6 C -0.12 -1.35 6.09 -26.65 -0.16 -1.52 16 7 C -0.14 -1.96 5.52 -26.60 -0.15 -2.11 16 8 C 0.17 2.63 1.74 -67.84 -0.12 2.52 16 9 H 0.08 1.46 6.48 -51.93 -0.34 1.12 16 10 N -0.76 -13.54 4.58 -52.13 -0.24 -13.77 16 11 C 0.23 5.15 6.63 -83.86 -0.56 4.59 16 12 C -0.30 -6.91 8.87 -39.09 -0.35 -7.26 16 13 C -0.07 -1.83 10.02 -39.69 -0.40 -2.23 16 14 C -0.20 -5.39 8.69 -38.83 -0.34 -5.73 16 15 C 0.14 3.90 5.57 -106.85 -0.60 3.30 16 16 C -0.47 -12.72 9.05 -37.74 -0.34 -13.06 16 17 H 0.07 1.95 7.91 -52.49 -0.42 1.53 16 18 C 0.08 2.02 5.14 -17.34 -0.09 1.93 16 19 N -0.79 -21.04 10.96 55.55 0.61 -20.44 16 20 Si 0.91 19.08 29.60 -169.99 -5.03 14.05 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 24 C -0.29 -7.29 9.63 -38.67 -0.37 -7.66 16 25 H 0.07 0.92 7.50 -51.93 -0.39 0.53 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.34 3.11 8.79 -39.29 -0.35 2.77 16 29 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.19 7.67 -51.93 -0.40 0.79 16 35 H 0.38 6.37 8.44 -40.82 -0.34 6.02 16 36 H 0.09 1.83 6.04 -52.49 -0.32 1.52 16 37 H 0.08 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.11 3.15 6.16 -52.49 -0.32 2.83 16 39 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 40 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -28.12 316.88 -10.13 -38.25 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -6.23 Total: 12.69 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -3.32 Total: -27.27 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: -0.32 Total: -42.49 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.12 -10.13 -38.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396717634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.669 kcal (2) G-P(sol) polarization free energy of solvation -28.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds