Wall clock time and date at job start Mon Mar 30 2020 06:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.45215 * 2 1 4 4 N 1.46840 * 109.46529 * 240.02444 * 2 1 3 5 5 C 1.46847 * 111.20161 * 178.24520 * 4 2 1 6 6 C 1.53041 * 109.52239 * 61.73907 * 5 4 2 7 7 C 1.53120 * 109.28037 * 300.82317 * 6 5 4 8 8 C 1.53042 * 109.45776 * 119.97111 * 2 1 3 9 9 H 1.09000 * 109.53757 * 59.23673 * 8 2 1 10 10 N 1.46503 * 109.50540 * 299.13608 * 8 2 1 11 11 C 1.39674 * 119.99684 * 155.19964 * 10 8 2 12 12 C 1.39330 * 119.95811 * 0.02562 * 11 10 8 13 13 C 1.38481 * 120.42923 * 179.97438 * 12 11 10 14 14 C 1.37687 * 120.32201 * 359.74275 * 13 12 11 15 15 C 1.40749 * 119.89174 * 0.51315 * 14 13 12 16 16 C 1.41410 * 120.20637 * 179.76527 * 15 14 13 17 17 H 1.08002 * 119.99963 * 155.64263 * 16 15 14 18 18 C 1.39934 * 120.00077 * 335.36877 * 16 15 14 19 19 N 1.30828 * 119.99733 * 342.27000 * 18 16 15 20 20 Si 1.86795 * 119.99928 * 162.27003 * 18 16 15 21 21 H 1.48499 * 109.47324 * 60.00250 * 20 18 16 22 22 H 1.48508 * 109.47202 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47267 * 299.99741 * 20 18 16 24 24 C 1.38284 * 119.94698 * 179.97438 * 11 10 8 25 25 H 1.08997 * 109.46931 * 300.02642 * 1 2 3 26 26 H 1.08996 * 109.46793 * 60.02939 * 1 2 3 27 27 H 1.08996 * 109.47188 * 180.02562 * 1 2 3 28 28 H 1.00900 * 111.00289 * 54.14306 * 4 2 1 29 29 H 1.09005 * 109.45838 * 301.72701 * 5 4 2 30 30 H 1.08996 * 109.45331 * 181.75207 * 5 4 2 31 31 H 1.08997 * 109.50163 * 180.87839 * 6 5 4 32 32 H 1.09003 * 109.53158 * 60.78543 * 6 5 4 33 33 H 1.08999 * 109.52000 * 297.75130 * 7 6 5 34 34 H 1.08994 * 109.52056 * 177.55858 * 7 6 5 35 35 H 0.96997 * 119.99875 * 335.19663 * 10 8 2 36 36 H 1.08001 * 119.78438 * 0.02562 * 12 11 10 37 37 H 1.07995 * 119.83997 * 179.97438 * 13 12 11 38 38 H 1.07999 * 120.05395 * 180.27386 * 14 13 12 39 39 H 0.97006 * 119.99686 * 179.97438 * 19 18 16 40 40 H 1.07993 * 120.16416 * 0.04697 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 7 2.0194 -0.6917 -1.1993 5 6 3.4866 -0.6777 -1.2590 6 6 4.0548 -1.4188 -0.0465 7 6 3.5710 -0.7360 1.2358 8 6 2.0399 -0.7209 1.2501 9 1 1.6659 -1.7447 1.2585 10 7 1.5688 -0.0183 2.4462 11 6 1.4396 -0.7064 3.6548 12 6 1.7593 -2.0608 3.7219 13 6 1.6353 -2.7525 4.9152 14 6 1.1992 -2.1072 6.0506 15 6 0.8673 -0.7404 5.9969 16 6 0.4140 -0.0722 7.1578 17 1 0.5313 0.9978 7.2455 18 6 -0.1917 -0.7966 8.1905 19 7 -0.6534 -1.9993 7.9624 20 14 -0.3411 -0.0464 9.8947 21 1 -1.1393 1.2033 9.8171 22 1 -1.0153 -1.0095 10.8022 23 1 1.0131 0.2628 10.4199 24 6 0.9954 -0.0421 4.7833 25 1 -0.3633 0.5142 0.8897 26 1 -0.3633 0.5134 -0.8902 27 1 -0.3633 -1.0276 0.0005 28 1 1.6197 -0.2926 -2.0354 29 1 3.8404 0.3533 -1.2531 30 1 3.8174 -1.1701 -2.1734 31 1 5.1439 -1.3948 -0.0829 32 1 3.7131 -2.4538 -0.0589 33 1 3.9457 0.2870 1.2673 34 1 3.9379 -1.2863 2.1021 35 1 1.3468 0.9248 2.3988 36 1 2.1069 -2.5745 2.8377 37 1 1.8853 -3.8023 4.9563 38 1 1.1083 -2.6497 6.9799 39 1 -1.0729 -2.5017 8.6784 40 1 0.7473 1.0078 4.7326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396717634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:15 Heat of formation + Delta-G solvation = -6.589497 kcal Electronic energy + Delta-G solvation = -19376.950377 eV Core-core repulsion = 16575.447147 eV Total energy + Delta-G solvation = -2801.503230 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.52354 -39.06502 -36.32937 -34.81079 -33.70535 -31.88951 -31.55104 -28.89144 -27.47071 -27.05367 -24.25347 -23.03155 -22.40229 -21.85944 -20.62371 -19.18363 -17.55889 -17.34721 -16.76978 -16.36279 -15.90557 -15.64044 -15.17377 -15.03382 -14.84415 -14.45146 -14.20974 -13.94369 -13.64226 -13.27279 -13.11066 -13.07511 -12.83726 -12.73638 -12.54071 -12.22695 -11.97007 -11.81815 -11.80073 -11.62739 -11.29031 -11.17317 -11.00696 -10.40795 -9.40762 -9.32907 -8.59970 -7.92449 -6.31608 1.06448 1.35597 1.39548 1.50833 1.61457 2.23103 2.64666 2.81553 3.35615 3.72975 3.82755 3.93949 4.07452 4.19926 4.28155 4.43082 4.50145 4.56833 4.70973 4.72811 4.83456 4.90736 4.95998 4.98110 5.09691 5.15545 5.17256 5.23177 5.26395 5.31902 5.42814 5.44524 5.61107 5.93357 6.01980 6.07832 6.21509 6.32672 6.51867 6.64119 6.90597 7.02924 7.05765 7.26520 8.38228 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.040406 B = 0.004252 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.800702 B = 6582.944727 C = 6813.158361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.089 3.911 3 H 0.044 0.956 4 N -0.688 5.688 5 C 0.060 3.940 6 C -0.113 4.113 7 C -0.134 4.134 8 C 0.169 3.831 9 H 0.061 0.939 10 N -0.744 5.744 11 C 0.241 3.759 12 C -0.302 4.302 13 C -0.076 4.076 14 C -0.233 4.233 15 C 0.114 3.886 16 C -0.504 4.504 17 H 0.072 0.928 18 C 0.037 3.963 19 N -0.824 5.824 20 Si 0.982 3.018 21 H -0.259 1.259 22 H -0.267 1.267 23 H -0.261 1.261 24 C -0.312 4.312 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.356 0.644 29 H 0.035 0.965 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.393 0.607 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.287 0.713 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.318 3.282 -14.936 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 H 0.062 0.938 4 N -0.322 5.322 5 C -0.069 4.069 6 C -0.151 4.151 7 C -0.173 4.173 8 C 0.062 3.938 9 H 0.079 0.921 10 N -0.376 5.376 11 C 0.139 3.861 12 C -0.325 4.325 13 C -0.095 4.095 14 C -0.253 4.253 15 C 0.111 3.889 16 C -0.534 4.534 17 H 0.090 0.910 18 C -0.178 4.178 19 N -0.450 5.450 20 Si 0.802 3.198 21 H -0.183 1.183 22 H -0.191 1.191 23 H -0.186 1.186 24 C -0.336 4.336 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.177 0.823 29 H 0.053 0.947 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.227 0.773 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.208 2.327 -14.696 15.764 hybrid contribution -0.177 1.327 0.838 1.579 sum 5.031 3.654 -13.858 15.189 Atomic orbital electron populations 1.21756 0.93800 1.02163 1.02079 1.21489 0.95642 0.95012 0.90035 0.93789 1.60161 1.07968 1.59642 1.04421 1.21975 0.86969 0.98954 0.99021 1.21564 1.00683 0.99723 0.93162 1.22059 0.96051 1.00735 0.98450 1.20730 0.93114 0.96129 0.83786 0.92053 1.44454 1.75473 1.11372 1.06267 1.17447 0.92114 0.91187 0.85322 1.20131 1.20664 0.93615 0.98070 1.20711 0.97603 0.98049 0.93098 1.21087 1.10117 0.96268 0.97865 1.17687 0.86979 0.92338 0.91915 1.19787 1.36323 0.95552 1.01715 0.90958 1.26760 0.91928 0.94836 1.04301 1.69922 1.27234 1.12392 1.35402 0.85272 0.79504 0.79029 0.75964 1.18346 1.19101 1.18568 1.20505 1.21020 0.99242 0.92870 0.92848 0.90743 0.93076 0.82340 0.94680 0.88712 0.89982 0.91901 0.92321 0.93393 0.77263 0.87529 0.87683 0.88648 0.90276 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.28 71.98 0.67 -2.56 16 2 C 0.09 2.03 2.61 44.94 0.12 2.15 16 3 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 4 N -0.69 -13.12 6.50 -491.67 -3.20 -16.31 16 5 C 0.06 1.01 6.55 86.33 0.57 1.58 16 6 C -0.11 -2.34 6.09 30.65 0.19 -2.15 16 7 C -0.13 -3.62 5.52 30.68 0.17 -3.45 16 8 C 0.17 4.96 1.74 45.05 0.08 5.04 16 9 H 0.06 2.10 6.48 -2.39 -0.02 2.09 16 10 N -0.74 -26.18 4.58 -318.85 -1.46 -27.64 16 11 C 0.24 10.92 6.63 38.17 0.25 11.18 16 12 C -0.30 -13.92 8.87 22.59 0.20 -13.72 16 13 C -0.08 -3.76 10.02 22.20 0.22 -3.54 16 14 C -0.23 -13.04 8.69 22.75 0.20 -12.85 16 15 C 0.11 6.50 5.57 -21.31 -0.12 6.38 16 16 C -0.50 -28.54 9.05 23.46 0.21 -28.32 16 17 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 18 C 0.04 1.93 5.14 85.25 0.44 2.37 16 19 N -0.82 -45.00 10.96 21.82 0.24 -44.76 16 20 Si 0.98 39.56 29.60 68.60 2.03 41.59 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 24 C -0.31 -16.10 9.63 22.86 0.22 -15.88 16 25 H 0.05 1.37 7.50 -2.39 -0.02 1.36 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.36 5.18 8.79 -89.69 -0.79 4.39 16 29 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.05 1.53 7.67 -2.39 -0.02 1.51 16 35 H 0.39 12.65 8.44 -92.71 -0.78 11.87 16 36 H 0.11 4.44 6.04 -2.91 -0.02 4.43 16 37 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 38 H 0.10 5.58 6.16 -2.91 -0.02 5.56 16 39 H 0.29 14.15 8.30 -92.70 -0.77 13.38 16 40 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -62.56 316.88 0.49 -62.07 By element: Atomic # 1 Polarization: 39.37 SS G_CDS: -0.53 Total: 38.84 kcal Atomic # 6 Polarization: -57.20 SS G_CDS: 3.41 Total: -53.79 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -4.42 Total: -88.71 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -62.56 0.49 -62.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396717634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.477 kcal (2) G-P(sol) polarization free energy of solvation -62.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds