Wall clock time and date at job start Mon Mar 30 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.45237 * 2 1 4 4 C 1.53034 * 109.46128 * 240.02750 * 2 1 3 5 5 C 1.53123 * 109.27516 * 180.80760 * 4 2 1 6 6 C 1.53114 * 109.16025 * 57.65360 * 5 4 2 7 7 H 1.08997 * 109.50546 * 62.32888 * 6 5 4 8 8 N 1.46504 * 109.50224 * 182.40499 * 6 5 4 9 9 C 1.38852 * 120.00029 * 205.00434 * 8 6 5 10 10 C 1.39572 * 119.84161 * 180.02562 * 9 8 6 11 11 C 1.36340 * 120.16222 * 179.97438 * 10 9 8 12 12 C 1.40888 * 119.83378 * 359.97438 * 11 10 9 13 13 C 1.41136 * 120.15399 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99921 * 334.76468 * 13 12 11 15 15 C 1.39862 * 120.00295 * 154.76855 * 13 12 11 16 16 N 1.30905 * 119.99781 * 334.23709 * 15 13 12 17 17 Si 1.86797 * 120.00298 * 154.23622 * 15 13 12 18 18 H 1.48503 * 109.47183 * 180.02562 * 17 15 13 19 19 H 1.48498 * 109.47231 * 299.99888 * 17 15 13 20 20 H 1.48499 * 109.47296 * 60.00054 * 17 15 13 21 21 C 1.40884 * 119.68921 * 0.25117 * 12 11 10 22 22 C 1.36342 * 119.83720 * 359.47065 * 21 12 11 23 23 C 1.53032 * 109.27933 * 302.34414 * 6 5 4 24 24 N 1.46842 * 109.52353 * 59.18283 * 23 6 5 25 25 H 1.08994 * 109.47130 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47486 * 299.97615 * 1 2 3 27 27 H 1.09008 * 109.46994 * 59.97421 * 1 2 3 28 28 H 1.09004 * 109.50592 * 60.86562 * 4 2 1 29 29 H 1.09004 * 109.50424 * 300.74432 * 4 2 1 30 30 H 1.09003 * 109.52214 * 297.74605 * 5 4 2 31 31 H 1.08999 * 109.57562 * 177.59165 * 5 4 2 32 32 H 0.97003 * 119.99600 * 24.99675 * 8 6 5 33 33 H 1.08001 * 119.92159 * 359.97110 * 10 9 8 34 34 H 1.07996 * 120.08360 * 180.02562 * 11 10 9 35 35 H 0.97003 * 120.00327 * 354.24659 * 16 15 13 36 36 H 1.08008 * 120.07915 * 179.72322 * 21 12 11 37 37 H 1.08001 * 119.92110 * 180.27345 * 22 21 12 38 38 H 1.09000 * 109.46328 * 179.19507 * 23 6 5 39 39 H 1.08996 * 109.46299 * 299.16229 * 23 6 5 40 40 H 1.00903 * 111.00067 * 174.15966 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7360 -1.2355 6 6 4.0547 -1.4188 0.0468 7 1 3.7131 -2.4538 0.0592 8 7 5.5186 -1.3864 0.0958 9 6 6.2099 -2.3406 0.8304 10 6 7.6045 -2.3063 0.8752 11 6 8.2899 -3.2398 1.5948 12 6 7.5869 -4.2403 2.2946 13 6 8.2896 -5.2102 3.0412 14 1 9.3072 -5.4600 2.7797 15 6 7.6681 -5.8479 4.1198 16 7 6.6926 -5.2527 4.7583 17 14 8.2300 -7.5489 4.6490 18 1 7.4169 -8.0010 5.8065 19 1 8.0574 -8.5002 3.5219 20 1 9.6620 -7.4982 5.0390 21 6 6.1794 -4.2715 2.2409 22 6 5.5069 -3.3283 1.5219 23 6 3.4864 -0.6777 1.2591 24 7 2.0193 -0.6918 1.1994 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5134 0.8901 27 1 -0.3633 0.5143 -0.8898 28 1 1.6895 -0.1981 -2.1400 29 1 1.6659 -1.7447 -1.2576 30 1 3.9457 0.2871 -1.2671 31 1 3.9390 -1.2856 -2.1019 32 1 6.0048 -0.6984 -0.3849 33 1 8.1420 -1.5386 0.3386 34 1 9.3689 -3.2118 1.6290 35 1 6.4561 -4.3379 4.5388 36 1 5.6343 -5.0384 2.7713 37 1 4.4278 -3.3483 1.4833 38 1 3.8174 -1.1699 2.1736 39 1 3.8403 0.3532 1.2533 40 1 1.6195 -0.2926 2.0354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399121478.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:36 Heat of formation + Delta-G solvation = 6.653460 kcal Electronic energy + Delta-G solvation = -19232.951040 eV Core-core repulsion = 16432.022069 eV Total energy + Delta-G solvation = -2800.928972 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.22596 -37.74653 -35.18163 -33.26608 -31.87128 -30.97187 -29.58174 -28.18382 -26.13249 -24.23308 -23.35412 -21.87724 -21.02599 -20.17435 -19.47974 -17.76811 -16.50902 -16.12667 -15.12473 -14.74834 -14.30053 -14.17570 -14.02792 -13.74637 -13.53446 -13.13951 -12.65040 -12.37192 -12.34522 -12.09395 -11.91770 -11.84227 -11.49388 -11.14061 -10.99578 -10.95659 -10.76041 -10.52817 -10.31166 -10.28741 -9.57637 -9.36147 -9.09196 -8.58318 -8.40436 -7.67402 -7.00937 -6.52328 -4.06829 2.93695 2.96709 3.25789 3.39665 3.46481 3.94457 4.17184 4.44589 4.70059 4.74066 4.85137 4.91476 5.15381 5.31739 5.45185 5.50891 5.57393 5.64164 5.68648 5.77461 5.82678 5.93164 6.00011 6.04410 6.17006 6.22057 6.32607 6.43009 6.77669 6.86180 7.03626 7.13354 7.37045 7.43493 7.51135 7.66625 7.92989 7.98886 8.24879 8.39515 8.50309 8.69906 8.98366 9.11992 10.27601 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.031878 B = 0.004307 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.131102 B = 6498.763809 C = 7079.508647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.081 3.919 3 H 0.033 0.967 4 C -0.108 4.108 5 C -0.127 4.127 6 C 0.168 3.832 7 H 0.080 0.920 8 N -0.756 5.756 9 C 0.080 3.920 10 C -0.146 4.146 11 C -0.192 4.192 12 C 0.068 3.932 13 C -0.536 4.536 14 H 0.069 0.931 15 C 0.039 3.961 16 N -0.812 5.812 17 Si 1.062 2.938 18 H -0.276 1.276 19 H -0.277 1.277 20 H -0.279 1.279 21 C -0.180 4.180 22 C -0.144 4.144 23 C 0.044 3.956 24 N -0.684 5.684 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.383 0.617 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.296 0.704 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.025 0.975 40 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.233 8.941 -8.005 15.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.028 4.028 3 H 0.051 0.949 4 C -0.146 4.146 5 C -0.165 4.165 6 C 0.060 3.940 7 H 0.098 0.902 8 N -0.391 5.391 9 C -0.017 4.017 10 C -0.168 4.168 11 C -0.212 4.212 12 C 0.064 3.936 13 C -0.565 4.565 14 H 0.087 0.913 15 C -0.180 4.180 16 N -0.437 5.437 17 Si 0.887 3.113 18 H -0.201 1.201 19 H -0.203 1.203 20 H -0.204 1.204 21 C -0.200 4.200 22 C -0.166 4.166 23 C -0.087 4.087 24 N -0.316 5.316 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.215 0.785 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.043 0.957 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.778 7.018 -7.147 13.998 hybrid contribution 0.741 2.601 -0.969 2.873 sum -9.037 9.619 -8.115 15.494 Atomic orbital electron populations 1.21822 0.94519 1.02629 1.01369 1.21491 0.94942 0.95033 0.91381 0.94881 1.21572 0.94991 1.01612 0.96458 1.21844 0.95754 1.00594 0.98346 1.20520 0.81513 0.99631 0.92303 0.90220 1.43869 1.03108 1.33816 1.58281 1.17268 0.90510 0.93768 1.00141 1.19876 0.91821 1.00940 1.04121 1.20510 0.97628 0.97408 1.05676 1.17568 0.91651 0.91574 0.92789 1.20305 1.01705 1.20548 1.13968 0.91294 1.26829 0.93329 1.04758 0.93131 1.70483 1.23662 1.14909 1.34635 0.83689 0.76542 0.74133 0.76968 1.20105 1.20253 1.20445 1.20774 0.94619 1.00295 1.04340 1.20084 0.97410 0.97264 1.01817 1.22503 0.86394 0.98758 1.01044 1.60264 1.07681 1.59202 1.04468 0.91640 0.92893 0.92329 0.91619 0.90871 0.92391 0.91369 0.78485 0.89518 0.89023 0.89102 0.87687 0.88769 0.90130 0.95669 0.84149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.43 37.16 0.35 -0.92 16 2 C 0.08 0.86 3.04 -67.72 -0.21 0.66 16 3 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 4 C -0.11 -1.15 5.37 -26.65 -0.14 -1.30 16 5 C -0.13 -1.55 5.47 -26.61 -0.15 -1.69 16 6 C 0.17 2.56 2.30 -67.85 -0.16 2.40 16 7 H 0.08 1.39 6.45 -51.93 -0.33 1.06 16 8 N -0.76 -13.09 5.22 -51.96 -0.27 -13.36 16 9 C 0.08 1.73 6.65 -83.69 -0.56 1.17 16 10 C -0.15 -3.28 9.82 -39.77 -0.39 -3.67 16 11 C -0.19 -4.82 9.74 -39.26 -0.38 -5.20 16 12 C 0.07 1.84 5.30 -106.79 -0.57 1.27 16 13 C -0.54 -14.84 8.96 -37.88 -0.34 -15.18 16 14 H 0.07 1.87 7.96 -52.49 -0.42 1.45 16 15 C 0.04 1.04 4.92 -17.34 -0.09 0.95 16 16 N -0.81 -22.46 12.32 55.54 0.68 -21.78 16 17 Si 1.06 22.59 30.00 -169.99 -5.10 17.49 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 19 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 C -0.18 -4.73 7.90 -39.26 -0.31 -5.04 16 22 C -0.14 -3.36 8.76 -39.77 -0.35 -3.71 16 23 C 0.04 0.64 6.05 -3.84 -0.02 0.62 16 24 N -0.68 -8.56 6.50 -106.77 -0.69 -9.25 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.38 5.95 8.60 -40.82 -0.35 5.60 16 33 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 35 H 0.30 8.40 6.71 -40.82 -0.27 8.12 16 36 H 0.11 2.87 6.50 -52.48 -0.34 2.53 16 37 H 0.09 2.06 6.04 -52.49 -0.32 1.74 16 38 H 0.08 1.38 7.68 -51.93 -0.40 0.98 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.34 3.79 8.79 -39.29 -0.35 3.45 16 LS Contribution 317.22 15.07 4.78 4.78 Total: -1.00 -28.28 317.22 -10.13 -38.41 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -6.23 Total: 13.34 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: -3.30 Total: -29.63 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.28 Total: -44.39 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.10 Total: 17.49 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.28 -10.13 -38.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399121478.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.064 kcal (2) G-P(sol) polarization free energy of solvation -28.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds