Wall clock time and date at job start Mon Mar 30 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.45237 * 2 1 4 4 C 1.53034 * 109.46128 * 240.02750 * 2 1 3 5 5 C 1.53123 * 109.27516 * 180.80760 * 4 2 1 6 6 C 1.53114 * 109.16025 * 57.65360 * 5 4 2 7 7 H 1.08997 * 109.50546 * 62.32888 * 6 5 4 8 8 N 1.46504 * 109.50224 * 182.40499 * 6 5 4 9 9 C 1.38852 * 120.00029 * 205.00434 * 8 6 5 10 10 C 1.39572 * 119.84161 * 180.02562 * 9 8 6 11 11 C 1.36340 * 120.16222 * 179.97438 * 10 9 8 12 12 C 1.40888 * 119.83378 * 359.97438 * 11 10 9 13 13 C 1.41136 * 120.15399 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99921 * 334.76468 * 13 12 11 15 15 C 1.39862 * 120.00295 * 154.76855 * 13 12 11 16 16 N 1.30905 * 119.99781 * 334.23709 * 15 13 12 17 17 Si 1.86797 * 120.00298 * 154.23622 * 15 13 12 18 18 H 1.48503 * 109.47183 * 180.02562 * 17 15 13 19 19 H 1.48498 * 109.47231 * 299.99888 * 17 15 13 20 20 H 1.48499 * 109.47296 * 60.00054 * 17 15 13 21 21 C 1.40884 * 119.68921 * 0.25117 * 12 11 10 22 22 C 1.36342 * 119.83720 * 359.47065 * 21 12 11 23 23 C 1.53032 * 109.27933 * 302.34414 * 6 5 4 24 24 N 1.46842 * 109.52353 * 59.18283 * 23 6 5 25 25 H 1.08994 * 109.47130 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47486 * 299.97615 * 1 2 3 27 27 H 1.09008 * 109.46994 * 59.97421 * 1 2 3 28 28 H 1.09004 * 109.50592 * 60.86562 * 4 2 1 29 29 H 1.09004 * 109.50424 * 300.74432 * 4 2 1 30 30 H 1.09003 * 109.52214 * 297.74605 * 5 4 2 31 31 H 1.08999 * 109.57562 * 177.59165 * 5 4 2 32 32 H 0.97003 * 119.99600 * 24.99675 * 8 6 5 33 33 H 1.08001 * 119.92159 * 359.97110 * 10 9 8 34 34 H 1.07996 * 120.08360 * 180.02562 * 11 10 9 35 35 H 0.97003 * 120.00327 * 354.24659 * 16 15 13 36 36 H 1.08008 * 120.07915 * 179.72322 * 21 12 11 37 37 H 1.08001 * 119.92110 * 180.27345 * 22 21 12 38 38 H 1.09000 * 109.46328 * 179.19507 * 23 6 5 39 39 H 1.08996 * 109.46299 * 299.16229 * 23 6 5 40 40 H 1.00903 * 111.00067 * 174.15966 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7360 -1.2355 6 6 4.0547 -1.4188 0.0468 7 1 3.7131 -2.4538 0.0592 8 7 5.5186 -1.3864 0.0958 9 6 6.2099 -2.3406 0.8304 10 6 7.6045 -2.3063 0.8752 11 6 8.2899 -3.2398 1.5948 12 6 7.5869 -4.2403 2.2946 13 6 8.2896 -5.2102 3.0412 14 1 9.3072 -5.4600 2.7797 15 6 7.6681 -5.8479 4.1198 16 7 6.6926 -5.2527 4.7583 17 14 8.2300 -7.5489 4.6490 18 1 7.4169 -8.0010 5.8065 19 1 8.0574 -8.5002 3.5219 20 1 9.6620 -7.4982 5.0390 21 6 6.1794 -4.2715 2.2409 22 6 5.5069 -3.3283 1.5219 23 6 3.4864 -0.6777 1.2591 24 7 2.0193 -0.6918 1.1994 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5134 0.8901 27 1 -0.3633 0.5143 -0.8898 28 1 1.6895 -0.1981 -2.1400 29 1 1.6659 -1.7447 -1.2576 30 1 3.9457 0.2871 -1.2671 31 1 3.9390 -1.2856 -2.1019 32 1 6.0048 -0.6984 -0.3849 33 1 8.1420 -1.5386 0.3386 34 1 9.3689 -3.2118 1.6290 35 1 6.4561 -4.3379 4.5388 36 1 5.6343 -5.0384 2.7713 37 1 4.4278 -3.3483 1.4833 38 1 3.8174 -1.1699 2.1736 39 1 3.8403 0.3532 1.2533 40 1 1.6195 -0.2926 2.0354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399121478.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:35 Heat of formation + Delta-G solvation = -10.725564 kcal Electronic energy + Delta-G solvation = -19233.704652 eV Core-core repulsion = 16432.022069 eV Total energy + Delta-G solvation = -2801.682583 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.53212 -39.37013 -36.77100 -34.97131 -32.87136 -32.31484 -31.51014 -29.85492 -27.37584 -25.98209 -24.46475 -23.39513 -22.59960 -21.74115 -20.66370 -19.74944 -17.83764 -17.62955 -16.51327 -16.11075 -15.87434 -15.48903 -15.33788 -15.02252 -14.91123 -14.66858 -14.09805 -14.01853 -13.87588 -13.46547 -13.31251 -12.93950 -12.87578 -12.77443 -12.61710 -12.16381 -11.95075 -11.87319 -11.56048 -11.51953 -11.35091 -11.26178 -10.90567 -10.42291 -9.63127 -9.42780 -9.06691 -8.33088 -6.11024 0.96761 1.07825 1.52184 1.68148 1.81630 2.40380 2.67261 2.78418 3.33805 3.65105 3.77853 3.85639 3.96449 4.18132 4.28701 4.33188 4.36713 4.44627 4.58392 4.64525 4.80055 4.82981 4.84746 4.92853 4.99500 5.03114 5.05950 5.18574 5.24186 5.30818 5.40835 5.49370 5.57312 5.73992 5.89775 5.93052 6.05456 6.31062 6.39928 6.43606 6.69916 6.95757 7.09440 7.23877 8.19213 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.031878 B = 0.004307 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.131102 B = 6498.763809 C = 7079.508647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.079 3.921 3 H 0.040 0.960 4 C -0.106 4.106 5 C -0.119 4.119 6 C 0.164 3.836 7 H 0.056 0.944 8 N -0.744 5.744 9 C 0.107 3.893 10 C -0.151 4.151 11 C -0.199 4.199 12 C 0.031 3.969 13 C -0.574 4.574 14 H 0.063 0.937 15 C 0.001 3.999 16 N -0.836 5.836 17 Si 1.115 2.885 18 H -0.273 1.273 19 H -0.267 1.267 20 H -0.260 1.260 21 C -0.192 4.192 22 C -0.154 4.154 23 C 0.053 3.947 24 N -0.692 5.692 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.398 0.602 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.278 0.722 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.049 0.951 39 H 0.032 0.968 40 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.025 10.510 -9.808 17.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.030 4.030 3 H 0.058 0.942 4 C -0.145 4.145 5 C -0.157 4.157 6 C 0.058 3.942 7 H 0.074 0.926 8 N -0.378 5.378 9 C 0.008 3.992 10 C -0.173 4.173 11 C -0.219 4.219 12 C 0.028 3.972 13 C -0.604 4.604 14 H 0.081 0.919 15 C -0.212 4.212 16 N -0.461 5.461 17 Si 0.932 3.068 18 H -0.197 1.197 19 H -0.192 1.192 20 H -0.184 1.184 21 C -0.212 4.212 22 C -0.176 4.176 23 C -0.078 4.078 24 N -0.325 5.325 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.232 0.768 33 H 0.140 0.860 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.592 8.643 -8.988 16.361 hybrid contribution 0.885 2.324 -0.577 2.553 sum -9.707 10.966 -9.565 17.492 Atomic orbital electron populations 1.21786 0.92934 1.02482 1.02640 1.21612 0.96200 0.94995 0.90238 0.94194 1.21605 0.93710 1.01486 0.97655 1.21791 0.96874 1.00894 0.96165 1.20652 0.79999 0.98952 0.94634 0.92627 1.43916 1.04208 1.32787 1.56914 1.17378 0.90644 0.93043 0.98111 1.20185 0.92232 1.01075 1.03807 1.20730 0.98161 0.97443 1.05522 1.17860 0.92289 0.92856 0.94244 1.20499 1.01970 1.22591 1.15351 0.91876 1.28260 0.92621 1.07792 0.92574 1.70606 1.25488 1.14189 1.35804 0.83043 0.77097 0.69686 0.76924 1.19749 1.19154 1.18404 1.20679 0.94543 1.00868 1.05155 1.20176 0.98025 0.97419 1.02009 1.22249 0.88025 0.98429 0.99100 1.60248 1.06199 1.60230 1.05871 0.92482 0.92278 0.90465 0.88929 0.91929 0.90914 0.91043 0.76765 0.85961 0.88486 0.91031 0.89917 0.87755 0.93284 0.95030 0.83300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.43 71.98 0.68 -1.36 16 2 C 0.08 1.44 3.04 44.94 0.14 1.58 16 3 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 4 C -0.11 -1.93 5.37 30.65 0.16 -1.77 16 5 C -0.12 -2.52 5.47 30.67 0.17 -2.35 16 6 C 0.16 4.73 2.30 45.04 0.10 4.83 16 7 H 0.06 1.91 6.45 -2.39 -0.02 1.89 16 8 N -0.74 -24.06 5.22 -318.30 -1.66 -25.72 16 9 C 0.11 4.54 6.65 38.67 0.26 4.79 16 10 C -0.15 -6.57 9.82 22.15 0.22 -6.35 16 11 C -0.20 -10.03 9.74 22.48 0.22 -9.81 16 12 C 0.03 1.73 5.30 -21.27 -0.11 1.62 16 13 C -0.57 -33.13 8.96 23.37 0.21 -32.92 16 14 H 0.06 3.56 7.96 -2.91 -0.02 3.54 16 15 C 0.00 0.04 4.92 85.22 0.42 0.46 16 16 N -0.84 -48.35 12.32 21.82 0.27 -48.09 16 17 Si 1.11 46.41 30.00 68.60 2.06 48.47 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 20 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 21 C -0.19 -10.53 7.90 22.48 0.18 -10.35 16 22 C -0.15 -7.32 8.76 22.15 0.19 -7.13 16 23 C 0.05 1.50 6.05 86.33 0.52 2.02 16 24 N -0.69 -16.27 6.50 -491.70 -3.20 -19.46 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.40 10.93 8.60 -92.71 -0.80 10.13 16 33 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 34 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 35 H 0.28 16.75 6.71 -92.71 -0.62 16.13 16 36 H 0.08 4.81 6.50 -2.91 -0.02 4.79 16 37 H 0.10 4.67 6.04 -2.91 -0.02 4.65 16 38 H 0.05 1.68 7.68 -2.39 -0.02 1.66 16 39 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.35 7.28 8.79 -89.69 -0.79 6.49 16 Total: -1.00 -63.68 317.22 0.42 -63.26 By element: Atomic # 1 Polarization: 38.67 SS G_CDS: -0.40 Total: 38.27 kcal Atomic # 6 Polarization: -60.09 SS G_CDS: 3.36 Total: -56.73 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -4.59 Total: -93.27 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.06 Total: 48.47 kcal Total: -63.68 0.42 -63.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399121478.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.534 kcal (2) G-P(sol) polarization free energy of solvation -63.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds