Wall clock time and date at job start Mon Mar 30 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46148 * 2 1 4 4 C 1.53033 * 109.46401 * 119.98708 * 2 1 3 5 5 C 1.53123 * 109.27715 * 179.19654 * 4 2 1 6 6 C 1.53124 * 109.15604 * 302.33770 * 5 4 2 7 7 H 1.09000 * 109.50915 * 297.67506 * 6 5 4 8 8 N 1.46499 * 109.49882 * 177.59667 * 6 5 4 9 9 C 1.38855 * 119.99817 * 155.00638 * 8 6 5 10 10 C 1.39567 * 119.84752 * 180.02562 * 9 8 6 11 11 C 1.36340 * 120.16693 * 180.02562 * 10 9 8 12 12 C 1.40886 * 119.83523 * 359.97438 * 11 10 9 13 13 C 1.41135 * 120.15672 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99872 * 205.63694 * 13 12 11 15 15 C 1.39861 * 119.99959 * 25.35803 * 13 12 11 16 16 N 1.30906 * 120.00055 * 17.16141 * 15 13 12 17 17 Si 1.86801 * 120.00065 * 197.15733 * 15 13 12 18 18 H 1.48496 * 109.47003 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47131 * 120.00172 * 17 15 13 20 20 H 1.48493 * 109.47261 * 240.00145 * 17 15 13 21 21 C 1.40888 * 119.68759 * 0.25155 * 12 11 10 22 22 C 1.36337 * 119.83565 * 359.47027 * 21 12 11 23 23 C 1.53038 * 109.27795 * 57.66018 * 6 5 4 24 24 N 1.46844 * 109.52309 * 300.82035 * 23 6 5 25 25 H 1.09004 * 109.46589 * 300.01426 * 1 2 3 26 26 H 1.09000 * 109.47303 * 60.01397 * 1 2 3 27 27 H 1.08997 * 109.47355 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.50991 * 59.25188 * 4 2 1 29 29 H 1.09000 * 109.53265 * 299.14971 * 4 2 1 30 30 H 1.08997 * 109.52111 * 182.43803 * 5 4 2 31 31 H 1.08994 * 109.58000 * 62.27383 * 5 4 2 32 32 H 0.96994 * 120.00474 * 334.99849 * 8 6 5 33 33 H 1.08006 * 119.91323 * 0.02562 * 10 9 8 34 34 H 1.07997 * 120.07878 * 179.97438 * 11 10 9 35 35 H 0.97003 * 119.99852 * 179.97438 * 16 15 13 36 36 H 1.08005 * 120.08336 * 179.72309 * 21 12 11 37 37 H 1.08007 * 119.91951 * 180.26856 * 22 21 12 38 38 H 1.09008 * 109.46309 * 60.83336 * 23 6 5 39 39 H 1.08998 * 109.46463 * 180.79928 * 23 6 5 40 40 H 1.00903 * 111.00114 * 297.64454 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7212 1.2497 5 6 3.5710 -0.7362 1.2353 6 6 4.0547 -1.4189 -0.0472 7 1 3.7130 -2.4539 -0.0598 8 7 5.5185 -1.3864 -0.0962 9 6 6.2099 -2.3404 -0.8310 10 6 7.6044 -2.3069 -0.8751 11 6 8.2898 -3.2401 -1.5950 12 6 7.5868 -4.2403 -2.2951 13 6 8.2894 -5.2094 -3.0429 14 1 7.8113 -5.6966 -3.8798 15 6 9.6067 -5.5344 -2.7038 16 7 10.0777 -5.2125 -1.5256 17 14 10.6941 -6.4281 -3.9320 18 1 9.9302 -6.6753 -5.1812 19 1 11.8848 -5.5947 -4.2371 20 1 11.1319 -7.7241 -3.3543 21 6 6.1788 -4.2652 -2.2500 22 6 5.5069 -3.3290 -1.5214 23 6 3.4864 -0.6775 -1.2594 24 7 2.0192 -0.6915 -1.1996 25 1 -0.3633 0.5141 0.8899 26 1 -0.3634 0.5136 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.6660 -1.7449 1.2573 29 1 1.6896 -0.1992 2.1402 30 1 3.9380 -1.2866 2.1016 31 1 3.9467 0.2864 1.2676 32 1 6.0048 -0.6985 0.3846 33 1 8.1420 -1.5397 -0.3375 34 1 9.3689 -3.2125 -1.6285 35 1 10.9913 -5.4384 -1.2902 36 1 5.6333 -5.0265 -2.7880 37 1 4.4278 -3.3494 -1.4823 38 1 3.8403 0.3535 -1.2533 39 1 3.8173 -1.1695 -2.1740 40 1 1.6645 -1.6351 -1.2429 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399121487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:39 Heat of formation + Delta-G solvation = 10.491348 kcal Electronic energy + Delta-G solvation = -19122.876283 eV Core-core repulsion = 16322.113735 eV Total energy + Delta-G solvation = -2800.762549 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.39157 -37.63551 -35.00963 -33.12351 -31.67224 -31.08164 -29.45087 -28.39030 -26.25290 -24.25314 -23.28002 -21.81771 -21.05693 -20.23968 -19.83033 -17.18735 -16.10738 -15.73615 -15.26342 -15.11280 -14.90307 -14.57346 -13.86726 -13.75070 -13.08713 -12.81959 -12.43666 -12.39480 -12.18393 -12.02858 -11.85277 -11.75664 -11.44581 -11.18977 -11.06492 -11.05804 -10.93699 -10.81656 -10.44224 -10.34771 -9.67074 -9.38973 -9.26513 -8.76492 -8.16903 -7.48834 -6.62824 -6.37234 -4.03121 2.90749 3.10177 3.16079 3.21597 3.34985 4.04479 4.06924 4.39988 4.66938 4.76107 4.80031 4.98790 5.15268 5.26737 5.35715 5.42590 5.56169 5.62123 5.76449 5.79183 5.83476 5.96912 6.02115 6.08043 6.15221 6.24541 6.31045 6.42130 6.84616 7.03190 7.06487 7.20828 7.32466 7.38414 7.60451 7.67126 7.80403 8.15892 8.34419 8.49432 8.68068 8.80719 9.06924 9.15651 10.38625 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.052077 B = 0.003790 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.537341 B = 7385.380160 C = 7686.387869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.080 3.920 3 H 0.078 0.922 4 C -0.148 4.148 5 C -0.127 4.127 6 C 0.131 3.869 7 H 0.069 0.931 8 N -0.754 5.754 9 C 0.093 3.907 10 C -0.164 4.164 11 C -0.122 4.122 12 C 0.075 3.925 13 C -0.467 4.467 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.809 5.809 17 Si 0.902 3.098 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.277 1.277 21 C -0.188 4.188 22 C -0.160 4.160 23 C 0.043 3.957 24 N -0.680 5.680 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.384 0.616 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.275 0.725 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.092 8.428 4.577 15.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 H 0.096 0.904 4 C -0.188 4.188 5 C -0.165 4.165 6 C 0.023 3.977 7 H 0.087 0.913 8 N -0.389 5.389 9 C -0.004 4.004 10 C -0.185 4.185 11 C -0.142 4.142 12 C 0.072 3.928 13 C -0.498 4.498 14 H 0.091 0.909 15 C -0.141 4.141 16 N -0.437 5.437 17 Si 0.728 3.272 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.203 1.203 21 C -0.208 4.208 22 C -0.182 4.182 23 C -0.089 4.089 24 N -0.309 5.309 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.216 0.784 33 H 0.104 0.896 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.115 8.870 4.243 15.603 hybrid contribution 1.066 -0.899 0.533 1.493 sum -11.049 7.971 4.777 14.437 Atomic orbital electron populations 1.21797 0.94552 1.01954 1.01881 1.21594 0.95009 0.98401 0.87994 0.90373 1.22294 0.95589 1.01349 0.99526 1.21838 0.95378 1.01031 0.98275 1.21337 0.82920 0.99169 0.94313 0.91297 1.43857 1.02844 1.33859 1.58312 1.17349 0.90696 0.93081 0.99264 1.20041 0.91574 1.01707 1.05217 1.20919 0.99687 0.93856 0.99700 1.17495 0.90711 0.92112 0.92473 1.19401 0.96895 1.19994 1.13520 0.90917 1.25795 0.98411 0.95017 0.94870 1.69860 1.16377 1.39112 1.18333 0.86362 0.80032 0.79185 0.81656 1.18627 1.19985 1.20293 1.20567 0.94631 1.00617 1.04984 1.19865 0.96733 0.98138 1.03458 1.22598 0.86056 1.01076 0.99124 1.60769 1.09188 1.22288 1.38672 0.92396 0.91893 0.92774 0.91837 0.91497 0.91590 0.91860 0.78369 0.89588 0.86376 0.91409 0.89145 0.89536 0.91295 0.90015 0.84385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.47 37.16 0.35 -0.84 16 2 C 0.08 0.80 3.03 -67.72 -0.21 0.59 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.15 -1.45 5.36 -26.65 -0.14 -1.59 16 5 C -0.13 -1.48 5.47 -26.60 -0.15 -1.62 16 6 C 0.13 1.88 2.28 -67.85 -0.15 1.72 16 7 H 0.07 1.09 6.44 -51.93 -0.33 0.76 16 8 N -0.75 -12.92 5.22 -51.95 -0.27 -13.19 16 9 C 0.09 2.01 6.65 -83.69 -0.56 1.45 16 10 C -0.16 -3.83 9.82 -39.77 -0.39 -4.22 16 11 C -0.12 -3.20 8.63 -39.26 -0.34 -3.54 16 12 C 0.07 2.04 5.57 -106.79 -0.59 1.44 16 13 C -0.47 -12.78 9.03 -37.88 -0.34 -13.12 16 14 H 0.07 1.93 7.90 -52.49 -0.41 1.51 16 15 C 0.07 1.92 5.14 -17.34 -0.09 1.83 16 16 N -0.81 -21.64 10.96 55.54 0.61 -21.03 16 17 Si 0.90 19.37 29.59 -169.99 -5.03 14.34 16 18 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 C -0.19 -4.67 9.74 -39.26 -0.38 -5.05 16 22 C -0.16 -3.58 8.77 -39.77 -0.35 -3.93 16 23 C 0.04 0.59 6.06 -3.83 -0.02 0.56 16 24 N -0.68 -8.00 6.50 -106.76 -0.69 -8.69 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.38 6.03 8.60 -40.82 -0.35 5.68 16 33 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 34 H 0.12 3.23 6.19 -52.49 -0.32 2.90 16 35 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 36 H 0.09 2.14 8.06 -52.48 -0.42 1.71 16 37 H 0.09 1.73 6.05 -52.48 -0.32 1.41 16 38 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.08 1.31 7.69 -51.93 -0.40 0.91 16 40 H 0.34 3.80 8.79 -39.29 -0.35 3.46 16 LS Contribution 317.98 15.07 4.79 4.79 Total: -1.00 -27.70 317.98 -10.23 -37.93 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -6.27 Total: 12.15 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -3.36 Total: -26.30 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: -0.36 Total: -42.91 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.70 -10.23 -37.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399121487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.426 kcal (2) G-P(sol) polarization free energy of solvation -27.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds