Wall clock time and date at job start Mon Mar 30 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46148 * 2 1 4 4 C 1.53033 * 109.46401 * 119.98708 * 2 1 3 5 5 C 1.53123 * 109.27715 * 179.19654 * 4 2 1 6 6 C 1.53124 * 109.15604 * 302.33770 * 5 4 2 7 7 H 1.09000 * 109.50915 * 297.67506 * 6 5 4 8 8 N 1.46499 * 109.49882 * 177.59667 * 6 5 4 9 9 C 1.38855 * 119.99817 * 155.00638 * 8 6 5 10 10 C 1.39567 * 119.84752 * 180.02562 * 9 8 6 11 11 C 1.36340 * 120.16693 * 180.02562 * 10 9 8 12 12 C 1.40886 * 119.83523 * 359.97438 * 11 10 9 13 13 C 1.41135 * 120.15672 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99872 * 205.63694 * 13 12 11 15 15 C 1.39861 * 119.99959 * 25.35803 * 13 12 11 16 16 N 1.30906 * 120.00055 * 17.16141 * 15 13 12 17 17 Si 1.86801 * 120.00065 * 197.15733 * 15 13 12 18 18 H 1.48496 * 109.47003 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47131 * 120.00172 * 17 15 13 20 20 H 1.48493 * 109.47261 * 240.00145 * 17 15 13 21 21 C 1.40888 * 119.68759 * 0.25155 * 12 11 10 22 22 C 1.36337 * 119.83565 * 359.47027 * 21 12 11 23 23 C 1.53038 * 109.27795 * 57.66018 * 6 5 4 24 24 N 1.46844 * 109.52309 * 300.82035 * 23 6 5 25 25 H 1.09004 * 109.46589 * 300.01426 * 1 2 3 26 26 H 1.09000 * 109.47303 * 60.01397 * 1 2 3 27 27 H 1.08997 * 109.47355 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.50991 * 59.25188 * 4 2 1 29 29 H 1.09000 * 109.53265 * 299.14971 * 4 2 1 30 30 H 1.08997 * 109.52111 * 182.43803 * 5 4 2 31 31 H 1.08994 * 109.58000 * 62.27383 * 5 4 2 32 32 H 0.96994 * 120.00474 * 334.99849 * 8 6 5 33 33 H 1.08006 * 119.91323 * 0.02562 * 10 9 8 34 34 H 1.07997 * 120.07878 * 179.97438 * 11 10 9 35 35 H 0.97003 * 119.99852 * 179.97438 * 16 15 13 36 36 H 1.08005 * 120.08336 * 179.72309 * 21 12 11 37 37 H 1.08007 * 119.91951 * 180.26856 * 22 21 12 38 38 H 1.09008 * 109.46309 * 60.83336 * 23 6 5 39 39 H 1.08998 * 109.46463 * 180.79928 * 23 6 5 40 40 H 1.00903 * 111.00114 * 297.64454 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7212 1.2497 5 6 3.5710 -0.7362 1.2353 6 6 4.0547 -1.4189 -0.0472 7 1 3.7130 -2.4539 -0.0598 8 7 5.5185 -1.3864 -0.0962 9 6 6.2099 -2.3404 -0.8310 10 6 7.6044 -2.3069 -0.8751 11 6 8.2898 -3.2401 -1.5950 12 6 7.5868 -4.2403 -2.2951 13 6 8.2894 -5.2094 -3.0429 14 1 7.8113 -5.6966 -3.8798 15 6 9.6067 -5.5344 -2.7038 16 7 10.0777 -5.2125 -1.5256 17 14 10.6941 -6.4281 -3.9320 18 1 9.9302 -6.6753 -5.1812 19 1 11.8848 -5.5947 -4.2371 20 1 11.1319 -7.7241 -3.3543 21 6 6.1788 -4.2652 -2.2500 22 6 5.5069 -3.3290 -1.5214 23 6 3.4864 -0.6775 -1.2594 24 7 2.0192 -0.6915 -1.1996 25 1 -0.3633 0.5141 0.8899 26 1 -0.3634 0.5136 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.6660 -1.7449 1.2573 29 1 1.6896 -0.1992 2.1402 30 1 3.9380 -1.2866 2.1016 31 1 3.9467 0.2864 1.2676 32 1 6.0048 -0.6985 0.3846 33 1 8.1420 -1.5397 -0.3375 34 1 9.3689 -3.2125 -1.6285 35 1 10.9913 -5.4384 -1.2902 36 1 5.6333 -5.0265 -2.7880 37 1 4.4278 -3.3494 -1.4823 38 1 3.8403 0.3535 -1.2533 39 1 3.8173 -1.1695 -2.1740 40 1 1.6645 -1.6351 -1.2429 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399121487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:39 Heat of formation + Delta-G solvation = -6.193800 kcal Electronic energy + Delta-G solvation = -19123.599805 eV Core-core repulsion = 16322.113735 eV Total energy + Delta-G solvation = -2801.486071 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.56895 -39.27351 -36.54399 -34.83499 -32.60783 -32.44540 -31.26533 -30.06984 -27.43598 -25.94680 -24.31230 -23.31277 -22.40451 -21.69656 -21.19778 -19.12174 -17.71729 -17.19630 -16.64886 -16.17452 -16.13453 -15.76369 -15.46301 -14.78774 -14.71465 -14.35721 -13.90425 -13.79247 -13.54819 -13.38065 -13.27785 -12.87551 -12.76973 -12.70597 -12.63329 -12.34657 -12.12866 -11.95143 -11.75351 -11.53462 -11.41486 -11.23151 -11.09989 -10.46383 -9.41673 -9.29921 -8.54481 -8.12944 -6.01543 1.09146 1.17970 1.40033 1.54325 1.57486 2.27442 2.78109 2.84343 3.39706 3.74540 3.82893 3.87366 4.11563 4.15752 4.28492 4.43715 4.45885 4.48680 4.51438 4.73727 4.83603 4.90639 4.98611 4.99631 5.06963 5.11007 5.17043 5.23031 5.31198 5.34561 5.39098 5.42908 5.72951 5.75930 5.91767 6.10757 6.18290 6.40691 6.46670 6.67721 6.87824 7.08325 7.12773 7.29597 8.48557 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.052077 B = 0.003790 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.537341 B = 7385.380160 C = 7686.387869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.079 3.921 3 H 0.077 0.923 4 C -0.141 4.141 5 C -0.120 4.120 6 C 0.130 3.870 7 H 0.056 0.944 8 N -0.745 5.745 9 C 0.116 3.884 10 C -0.175 4.175 11 C -0.140 4.140 12 C 0.036 3.964 13 C -0.506 4.506 14 H 0.067 0.933 15 C 0.031 3.969 16 N -0.843 5.843 17 Si 0.977 3.023 18 H -0.261 1.261 19 H -0.266 1.266 20 H -0.268 1.268 21 C -0.197 4.197 22 C -0.165 4.165 23 C 0.054 3.946 24 N -0.683 5.683 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.394 0.606 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.282 0.718 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.574 9.482 5.452 17.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 H 0.095 0.905 4 C -0.181 4.181 5 C -0.159 4.159 6 C 0.022 3.978 7 H 0.075 0.925 8 N -0.379 5.379 9 C 0.016 3.984 10 C -0.197 4.197 11 C -0.161 4.161 12 C 0.033 3.967 13 C -0.538 4.538 14 H 0.085 0.915 15 C -0.180 4.180 16 N -0.472 5.472 17 Si 0.799 3.201 18 H -0.185 1.185 19 H -0.191 1.191 20 H -0.193 1.193 21 C -0.217 4.217 22 C -0.187 4.187 23 C -0.078 4.078 24 N -0.312 5.312 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.228 0.772 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.130 0.870 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.643 9.959 5.145 17.657 hybrid contribution 1.348 -1.089 0.361 1.770 sum -12.295 8.870 5.506 16.129 Atomic orbital electron populations 1.21759 0.93030 1.02368 1.02540 1.21677 0.96172 0.98012 0.87173 0.90463 1.22255 0.93898 1.01663 1.00251 1.21788 0.96807 1.01039 0.96229 1.21515 0.80877 0.99027 0.96370 0.92549 1.43945 1.04245 1.32731 1.56980 1.17427 0.90357 0.92844 0.97737 1.20240 0.92614 1.01731 1.05165 1.20854 0.99016 0.95019 1.01162 1.17805 0.91904 0.93015 0.93947 1.19616 0.98501 1.21367 1.14272 0.91514 1.26609 0.99224 0.95697 0.96515 1.69920 1.17031 1.40360 1.19839 0.85243 0.77903 0.78099 0.78903 1.18466 1.19129 1.19347 1.20764 0.94158 1.01418 1.05387 1.20086 0.98033 0.97668 1.02886 1.22356 0.87481 1.00457 0.97486 1.60769 1.07611 1.22734 1.40094 0.90731 0.92290 0.92490 0.91830 0.89441 0.91807 0.90928 0.77172 0.87507 0.88269 0.90789 0.88774 0.87024 0.91305 0.92514 0.83991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.47 71.98 0.68 -1.19 16 2 C 0.08 1.34 3.03 44.93 0.14 1.48 16 3 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.14 -2.27 5.36 30.65 0.16 -2.11 16 5 C -0.12 -2.44 5.47 30.68 0.17 -2.27 16 6 C 0.13 3.44 2.28 45.05 0.10 3.54 16 7 H 0.06 1.67 6.44 -2.39 -0.02 1.66 16 8 N -0.75 -24.11 5.22 -318.28 -1.66 -25.77 16 9 C 0.12 4.90 6.65 38.67 0.26 5.16 16 10 C -0.18 -8.22 9.82 22.15 0.22 -8.01 16 11 C -0.14 -7.64 8.63 22.48 0.19 -7.44 16 12 C 0.04 2.04 5.57 -21.27 -0.12 1.92 16 13 C -0.51 -28.85 9.03 23.37 0.21 -28.64 16 14 H 0.07 3.71 7.90 -2.91 -0.02 3.68 16 15 C 0.03 1.66 5.14 85.22 0.44 2.10 16 16 N -0.84 -46.48 10.96 21.81 0.24 -46.24 16 17 Si 0.98 40.58 29.59 68.60 2.03 42.61 16 18 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 19 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 20 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 21 C -0.20 -10.02 9.74 22.48 0.22 -9.81 16 22 C -0.16 -7.30 8.77 22.15 0.19 -7.11 16 23 C 0.05 1.39 6.06 86.33 0.52 1.91 16 24 N -0.68 -14.60 6.50 -491.68 -3.20 -17.80 16 25 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.39 11.41 8.60 -92.71 -0.80 10.61 16 33 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.10 5.68 6.19 -2.91 -0.02 5.66 16 35 H 0.28 14.09 8.30 -92.71 -0.77 13.33 16 36 H 0.09 4.57 8.06 -2.91 -0.02 4.54 16 37 H 0.11 4.33 6.05 -2.91 -0.02 4.31 16 38 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.06 1.76 7.69 -2.39 -0.02 1.74 16 40 H 0.34 6.99 8.79 -89.69 -0.79 6.20 16 Total: -1.00 -61.31 317.98 0.25 -61.06 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: -0.55 Total: 36.59 kcal Atomic # 6 Polarization: -53.85 SS G_CDS: 3.39 Total: -50.46 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -4.62 Total: -89.80 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -61.31 0.25 -61.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399121487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.868 kcal (2) G-P(sol) polarization free energy of solvation -61.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds