Wall clock time and date at job start Mon Mar 30 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.44678 * 2 1 4 4 C 1.53031 * 109.46830 * 240.02239 * 2 1 3 5 5 C 1.53112 * 109.27955 * 180.80414 * 4 2 1 6 6 C 1.53122 * 109.16168 * 57.65297 * 5 4 2 7 7 H 1.08996 * 109.50206 * 62.28810 * 6 5 4 8 8 N 1.46502 * 109.53203 * 182.38462 * 6 5 4 9 9 C 1.39685 * 119.99718 * 204.82096 * 8 6 5 10 10 C 1.39341 * 119.95261 * 0.02562 * 9 8 6 11 11 C 1.38478 * 120.42724 * 179.97438 * 10 9 8 12 12 C 1.37687 * 120.32298 * 359.97438 * 11 10 9 13 13 C 1.40753 * 119.89486 * 0.02562 * 12 11 10 14 14 C 1.41408 * 120.20999 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99975 * 24.33310 * 14 13 12 16 16 C 1.39931 * 119.99775 * 204.33642 * 14 13 12 17 17 N 1.30829 * 120.00220 * 17.73584 * 16 14 13 18 18 Si 1.86796 * 119.99467 * 197.73083 * 16 14 13 19 19 H 1.48505 * 109.47077 * 60.00528 * 18 16 14 20 20 H 1.48502 * 109.47043 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47623 * 299.99993 * 18 16 14 22 22 C 1.38270 * 119.95507 * 179.72619 * 9 8 6 23 23 C 1.53035 * 109.27562 * 302.34427 * 6 5 4 24 24 N 1.46847 * 109.52245 * 59.18300 * 23 6 5 25 25 H 1.09000 * 109.47461 * 300.03048 * 1 2 3 26 26 H 1.09004 * 109.46824 * 60.03751 * 1 2 3 27 27 H 1.09004 * 109.46896 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.50131 * 60.85964 * 4 2 1 29 29 H 1.09008 * 109.53192 * 300.76746 * 4 2 1 30 30 H 1.08995 * 109.52415 * 297.74510 * 5 4 2 31 31 H 1.09006 * 109.57371 * 177.58661 * 5 4 2 32 32 H 0.96998 * 120.00340 * 24.82484 * 8 6 5 33 33 H 1.08002 * 119.78713 * 0.02562 * 10 9 8 34 34 H 1.07997 * 119.83998 * 180.02562 * 11 10 9 35 35 H 1.08005 * 120.05347 * 180.02562 * 12 11 10 36 36 H 0.96997 * 119.99543 * 179.97438 * 17 16 14 37 37 H 1.08007 * 120.16044 * 0.02562 * 22 9 8 38 38 H 1.08996 * 109.46380 * 299.16092 * 23 6 5 39 39 H 1.09006 * 109.45269 * 179.19196 * 23 6 5 40 40 H 1.00898 * 111.00170 * 62.35548 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0400 -0.7209 -1.2498 5 6 3.5710 -0.7360 -1.2353 6 6 4.0548 -1.4186 0.0471 7 1 3.7126 -2.4534 0.0599 8 7 5.5187 -1.3869 0.0966 9 6 6.2133 -2.3447 0.8390 10 6 5.5129 -3.3302 1.5318 11 6 6.1915 -4.2849 2.2704 12 6 7.5671 -4.2709 2.3279 13 6 8.2882 -3.2816 1.6334 14 6 9.7012 -3.2612 1.6873 15 1 10.2464 -4.1681 1.9036 16 6 10.3928 -2.0661 1.4606 17 7 9.7652 -0.9212 1.5433 18 14 12.2124 -2.1056 1.0399 19 1 12.4145 -2.8800 -0.2110 20 1 12.7062 -0.7183 0.8479 21 1 12.9628 -2.7498 2.1476 22 6 7.5951 -2.3174 0.8805 23 6 3.4864 -0.6773 1.2593 24 7 2.0192 -0.6915 1.1995 25 1 -0.3634 0.5143 0.8897 26 1 -0.3633 0.5133 -0.8904 27 1 -0.3633 -1.0277 0.0005 28 1 1.6896 -0.1983 -2.1398 29 1 1.6660 -1.7448 -1.2581 30 1 3.9457 0.2870 -1.2671 31 1 3.9390 -1.2858 -2.1017 32 1 6.0055 -0.7008 -0.3862 33 1 4.4338 -3.3501 1.4917 34 1 5.6392 -5.0446 2.8034 35 1 8.0920 -5.0178 2.9050 36 1 10.2448 -0.0928 1.3865 37 1 8.1392 -1.5567 0.3404 38 1 3.8402 0.3536 1.2533 39 1 3.8174 -1.1696 2.1738 40 1 1.6647 -1.6352 1.2428 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399134778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:50 Heat of formation + Delta-G solvation = 6.714027 kcal Electronic energy + Delta-G solvation = -19302.249804 eV Core-core repulsion = 16501.323459 eV Total energy + Delta-G solvation = -2800.926345 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.32895 -37.49156 -34.86057 -33.31457 -31.62587 -31.18324 -29.41817 -27.83413 -25.62041 -25.11716 -23.33987 -21.59933 -21.12285 -20.19391 -19.70095 -17.19815 -16.02485 -15.44915 -15.14816 -15.06429 -14.77983 -14.55458 -14.19872 -13.75040 -13.05989 -12.86132 -12.49517 -12.33614 -12.19285 -12.05219 -11.82201 -11.59868 -11.43850 -11.12138 -11.07180 -10.97096 -10.90093 -10.60151 -10.43917 -10.26613 -9.59188 -9.46287 -9.33788 -8.91806 -8.18601 -7.29242 -6.71161 -6.13645 -4.29575 2.89873 3.09817 3.13280 3.24912 3.35784 3.98879 4.07462 4.43003 4.70509 4.73499 4.83725 5.02252 5.19275 5.30806 5.39961 5.47204 5.59904 5.65328 5.80431 5.83073 5.86247 6.00561 6.06956 6.11935 6.20772 6.29646 6.43074 6.62369 6.88992 7.05381 7.14229 7.16387 7.40204 7.42926 7.46315 7.83223 7.97723 8.12968 8.19067 8.50965 8.72033 8.85661 9.03106 9.13837 10.27415 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.004430 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.162448 B = 6319.557041 C = 6803.282471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.080 3.920 3 H 0.079 0.921 4 C -0.147 4.147 5 C -0.128 4.128 6 C 0.130 3.870 7 H 0.071 0.929 8 N -0.753 5.753 9 C 0.217 3.783 10 C -0.300 4.300 11 C -0.066 4.066 12 C -0.258 4.258 13 C 0.140 3.860 14 C -0.466 4.466 15 H 0.075 0.925 16 C 0.078 3.922 17 N -0.792 5.792 18 Si 0.904 3.096 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.266 1.266 22 C -0.232 4.232 23 C 0.043 3.957 24 N -0.679 5.679 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.389 0.611 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.278 0.722 37 H 0.116 0.884 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.294 3.123 -5.127 13.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.031 4.031 3 H 0.097 0.903 4 C -0.187 4.187 5 C -0.166 4.166 6 C 0.021 3.979 7 H 0.089 0.911 8 N -0.386 5.386 9 C 0.118 3.882 10 C -0.323 4.323 11 C -0.084 4.084 12 C -0.279 4.279 13 C 0.137 3.863 14 C -0.496 4.496 15 H 0.094 0.906 16 C -0.139 4.139 17 N -0.418 5.418 18 Si 0.729 3.271 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.255 4.255 23 C -0.088 4.088 24 N -0.308 5.308 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.222 0.778 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.134 0.866 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.504 3.878 -4.672 13.900 hybrid contribution 1.303 -0.310 -1.047 1.700 sum -11.201 3.568 -5.719 13.073 Atomic orbital electron populations 1.21795 0.94573 1.01893 1.01875 1.21603 0.94977 0.98479 0.88006 0.90323 1.22285 0.95572 1.01276 0.99537 1.21843 0.95368 1.01179 0.98207 1.21374 0.82841 0.99247 0.94410 0.91140 1.44404 1.03073 1.33888 1.57222 1.17641 0.91390 0.88178 0.90972 1.19878 0.96567 1.02850 1.12976 1.20281 0.94264 0.96545 0.97354 1.20859 0.93095 1.05113 1.08793 1.17312 0.92857 0.89338 0.86816 1.19529 0.91655 0.95287 1.43119 0.90642 1.25868 1.00547 0.94994 0.92490 1.69859 1.38356 0.98444 1.35122 0.86442 0.82541 0.77970 0.80145 1.18951 1.20479 1.19083 1.20718 0.90037 1.06155 1.08636 1.22593 0.85942 1.01216 0.99067 1.60767 1.09230 1.22181 1.38659 0.91899 0.92405 0.92821 0.91496 0.91887 0.91749 0.91567 0.77808 0.89718 0.89698 0.89441 0.91158 0.86607 0.91183 0.89889 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.47 37.16 0.35 -0.89 16 2 C 0.08 0.84 3.03 -67.73 -0.21 0.63 16 3 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 4 C -0.15 -1.51 5.36 -26.66 -0.14 -1.66 16 5 C -0.13 -1.59 5.47 -26.61 -0.15 -1.74 16 6 C 0.13 1.98 2.29 -67.85 -0.16 1.82 16 7 H 0.07 1.15 6.48 -51.93 -0.34 0.82 16 8 N -0.75 -14.16 5.25 -52.14 -0.27 -14.43 16 9 C 0.22 5.01 6.63 -83.86 -0.56 4.46 16 10 C -0.30 -6.78 8.86 -39.08 -0.35 -7.12 16 11 C -0.07 -1.52 10.02 -39.69 -0.40 -1.92 16 12 C -0.26 -6.57 9.79 -38.83 -0.38 -6.95 16 13 C 0.14 3.83 5.57 -106.85 -0.60 3.23 16 14 C -0.47 -12.67 9.05 -37.74 -0.34 -13.02 16 15 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 16 C 0.08 2.01 5.14 -17.34 -0.09 1.92 16 17 N -0.79 -20.76 10.96 55.55 0.61 -20.15 16 18 Si 0.90 19.00 29.59 -169.99 -5.03 13.97 16 19 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 C -0.23 -6.06 8.53 -38.68 -0.33 -6.39 16 23 C 0.04 0.64 6.07 -3.84 -0.02 0.61 16 24 N -0.68 -8.43 6.50 -106.76 -0.69 -9.13 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.39 7.05 8.61 -40.82 -0.35 6.70 16 33 H 0.08 1.72 6.07 -52.49 -0.32 1.40 16 34 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 36 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 37 H 0.12 3.13 6.17 -52.48 -0.32 2.81 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 1.43 7.69 -51.93 -0.40 1.03 16 40 H 0.34 3.94 8.79 -39.29 -0.35 3.59 16 LS Contribution 318.30 15.07 4.80 4.80 Total: -1.00 -27.59 318.30 -10.22 -37.82 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -6.27 Total: 14.14 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: -3.36 Total: -27.01 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -0.36 Total: -43.71 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.59 -10.22 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399134778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.530 kcal (2) G-P(sol) polarization free energy of solvation -27.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds