Wall clock time and date at job start Mon Mar 30 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.44678 * 2 1 4 4 C 1.53031 * 109.46830 * 240.02239 * 2 1 3 5 5 C 1.53112 * 109.27955 * 180.80414 * 4 2 1 6 6 C 1.53122 * 109.16168 * 57.65297 * 5 4 2 7 7 H 1.08996 * 109.50206 * 62.28810 * 6 5 4 8 8 N 1.46502 * 109.53203 * 182.38462 * 6 5 4 9 9 C 1.39685 * 119.99718 * 204.82096 * 8 6 5 10 10 C 1.39341 * 119.95261 * 0.02562 * 9 8 6 11 11 C 1.38478 * 120.42724 * 179.97438 * 10 9 8 12 12 C 1.37687 * 120.32298 * 359.97438 * 11 10 9 13 13 C 1.40753 * 119.89486 * 0.02562 * 12 11 10 14 14 C 1.41408 * 120.20999 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99975 * 24.33310 * 14 13 12 16 16 C 1.39931 * 119.99775 * 204.33642 * 14 13 12 17 17 N 1.30829 * 120.00220 * 17.73584 * 16 14 13 18 18 Si 1.86796 * 119.99467 * 197.73083 * 16 14 13 19 19 H 1.48505 * 109.47077 * 60.00528 * 18 16 14 20 20 H 1.48502 * 109.47043 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47623 * 299.99993 * 18 16 14 22 22 C 1.38270 * 119.95507 * 179.72619 * 9 8 6 23 23 C 1.53035 * 109.27562 * 302.34427 * 6 5 4 24 24 N 1.46847 * 109.52245 * 59.18300 * 23 6 5 25 25 H 1.09000 * 109.47461 * 300.03048 * 1 2 3 26 26 H 1.09004 * 109.46824 * 60.03751 * 1 2 3 27 27 H 1.09004 * 109.46896 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.50131 * 60.85964 * 4 2 1 29 29 H 1.09008 * 109.53192 * 300.76746 * 4 2 1 30 30 H 1.08995 * 109.52415 * 297.74510 * 5 4 2 31 31 H 1.09006 * 109.57371 * 177.58661 * 5 4 2 32 32 H 0.96998 * 120.00340 * 24.82484 * 8 6 5 33 33 H 1.08002 * 119.78713 * 0.02562 * 10 9 8 34 34 H 1.07997 * 119.83998 * 180.02562 * 11 10 9 35 35 H 1.08005 * 120.05347 * 180.02562 * 12 11 10 36 36 H 0.96997 * 119.99543 * 179.97438 * 17 16 14 37 37 H 1.08007 * 120.16044 * 0.02562 * 22 9 8 38 38 H 1.08996 * 109.46380 * 299.16092 * 23 6 5 39 39 H 1.09006 * 109.45269 * 179.19196 * 23 6 5 40 40 H 1.00898 * 111.00170 * 62.35548 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0400 -0.7209 -1.2498 5 6 3.5710 -0.7360 -1.2353 6 6 4.0548 -1.4186 0.0471 7 1 3.7126 -2.4534 0.0599 8 7 5.5187 -1.3869 0.0966 9 6 6.2133 -2.3447 0.8390 10 6 5.5129 -3.3302 1.5318 11 6 6.1915 -4.2849 2.2704 12 6 7.5671 -4.2709 2.3279 13 6 8.2882 -3.2816 1.6334 14 6 9.7012 -3.2612 1.6873 15 1 10.2464 -4.1681 1.9036 16 6 10.3928 -2.0661 1.4606 17 7 9.7652 -0.9212 1.5433 18 14 12.2124 -2.1056 1.0399 19 1 12.4145 -2.8800 -0.2110 20 1 12.7062 -0.7183 0.8479 21 1 12.9628 -2.7498 2.1476 22 6 7.5951 -2.3174 0.8805 23 6 3.4864 -0.6773 1.2593 24 7 2.0192 -0.6915 1.1995 25 1 -0.3634 0.5143 0.8897 26 1 -0.3633 0.5133 -0.8904 27 1 -0.3633 -1.0277 0.0005 28 1 1.6896 -0.1983 -2.1398 29 1 1.6660 -1.7448 -1.2581 30 1 3.9457 0.2870 -1.2671 31 1 3.9390 -1.2858 -2.1017 32 1 6.0055 -0.7008 -0.3862 33 1 4.4338 -3.3501 1.4917 34 1 5.6392 -5.0446 2.8034 35 1 8.0920 -5.0178 2.9050 36 1 10.2448 -0.0928 1.3865 37 1 8.1392 -1.5567 0.3404 38 1 3.8402 0.3536 1.2533 39 1 3.8174 -1.1696 2.1738 40 1 1.6647 -1.6352 1.2428 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399134778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:49 Heat of formation + Delta-G solvation = -9.885798 kcal Electronic energy + Delta-G solvation = -19302.969627 eV Core-core repulsion = 16501.323459 eV Total energy + Delta-G solvation = -2801.646168 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.54449 -39.16798 -36.40540 -35.11886 -32.63001 -32.47491 -31.34640 -29.29509 -27.19742 -26.71582 -24.40207 -23.15101 -22.47063 -21.54944 -21.26015 -19.07729 -17.67451 -16.81517 -16.60604 -16.41445 -16.05207 -16.01854 -15.54548 -14.80115 -14.71998 -14.47096 -14.02522 -13.63751 -13.52756 -13.39844 -13.18300 -12.84683 -12.75582 -12.71215 -12.51453 -12.30085 -12.07365 -11.96831 -11.77770 -11.57358 -11.38204 -11.30032 -11.12833 -10.66433 -9.32794 -9.25277 -8.61985 -7.88173 -6.32444 1.09170 1.33307 1.38005 1.49179 1.59277 2.22672 2.70168 2.82077 3.37114 3.71456 3.82329 3.86707 4.09480 4.13576 4.27760 4.43377 4.45621 4.52089 4.71910 4.75426 4.82240 4.89780 4.97422 4.99275 5.04044 5.10025 5.18470 5.21755 5.29066 5.33056 5.38610 5.46536 5.59673 5.94145 6.04620 6.12362 6.21225 6.27922 6.47324 6.58183 6.93818 7.04570 7.06106 7.24403 8.37948 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.004430 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.162448 B = 6319.557041 C = 6803.282471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.078 3.922 3 H 0.073 0.927 4 C -0.139 4.139 5 C -0.122 4.122 6 C 0.130 3.870 7 H 0.065 0.935 8 N -0.748 5.748 9 C 0.223 3.777 10 C -0.300 4.300 11 C -0.063 4.063 12 C -0.286 4.286 13 C 0.110 3.890 14 C -0.506 4.506 15 H 0.071 0.929 16 C 0.038 3.962 17 N -0.822 5.822 18 Si 0.979 3.021 19 H -0.262 1.262 20 H -0.267 1.267 21 H -0.260 1.260 22 C -0.260 4.260 23 C 0.055 3.945 24 N -0.680 5.680 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.391 0.609 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.285 0.715 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.840 3.512 -6.105 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.032 4.032 3 H 0.091 0.909 4 C -0.178 4.178 5 C -0.160 4.160 6 C 0.022 3.978 7 H 0.083 0.917 8 N -0.379 5.379 9 C 0.122 3.878 10 C -0.323 4.323 11 C -0.081 4.081 12 C -0.307 4.307 13 C 0.107 3.893 14 C -0.536 4.536 15 H 0.090 0.910 16 C -0.177 4.177 17 N -0.448 5.448 18 Si 0.800 3.200 19 H -0.187 1.187 20 H -0.191 1.191 21 H -0.185 1.185 22 C -0.284 4.284 23 C -0.077 4.077 24 N -0.309 5.309 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.224 0.776 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.102 4.281 -5.661 15.787 hybrid contribution 1.616 -0.405 -0.738 1.822 sum -12.486 3.876 -6.399 14.556 Atomic orbital electron populations 1.21749 0.92719 1.02522 1.02551 1.21692 0.96370 0.97903 0.87226 0.90855 1.22241 0.93474 1.01884 1.00225 1.21803 0.97138 1.00815 0.96255 1.21573 0.80401 0.99423 0.96368 0.91694 1.44534 1.04700 1.32695 1.55946 1.17740 0.90780 0.88746 0.90576 1.20197 0.97881 1.02137 1.12068 1.20647 0.93617 0.97061 0.96800 1.21018 0.94343 1.05490 1.09842 1.17703 0.93600 0.90428 0.87602 1.19796 0.92287 0.96061 1.45467 0.91045 1.26705 1.05311 0.94071 0.91595 1.69918 1.40379 0.99121 1.35335 0.85306 0.76365 0.78487 0.79819 1.18651 1.19131 1.18473 1.20653 0.91424 1.06434 1.09933 1.22319 0.87692 1.00142 0.97524 1.60753 1.07266 1.22810 1.40115 0.92304 0.90710 0.92204 0.89385 0.91358 0.91514 0.91652 0.77576 0.87108 0.86469 0.89285 0.90459 0.88323 0.92010 0.92453 0.83771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.47 71.98 0.68 -1.26 16 2 C 0.08 1.43 3.03 44.94 0.14 1.57 16 3 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 4 C -0.14 -2.41 5.36 30.64 0.16 -2.25 16 5 C -0.12 -2.78 5.47 30.67 0.17 -2.61 16 6 C 0.13 3.78 2.29 45.04 0.10 3.89 16 7 H 0.07 2.00 6.48 -2.39 -0.02 1.98 16 8 N -0.75 -27.96 5.25 -318.87 -1.67 -29.63 16 9 C 0.22 10.39 6.63 38.16 0.25 10.65 16 10 C -0.30 -13.33 8.86 22.59 0.20 -13.13 16 11 C -0.06 -2.87 10.02 22.20 0.22 -2.65 16 12 C -0.29 -14.93 9.79 22.75 0.22 -14.71 16 13 C 0.11 6.23 5.57 -21.31 -0.12 6.11 16 14 C -0.51 -28.66 9.05 23.46 0.21 -28.45 16 15 H 0.07 3.92 7.91 -2.91 -0.02 3.89 16 16 C 0.04 1.99 5.14 85.25 0.44 2.43 16 17 N -0.82 -44.26 10.96 21.82 0.24 -44.02 16 18 Si 0.98 39.51 29.59 68.60 2.03 41.54 16 19 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 20 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 22 C -0.26 -14.10 8.53 22.86 0.20 -13.91 16 23 C 0.05 1.57 6.07 86.32 0.52 2.10 16 24 N -0.68 -15.57 6.50 -491.68 -3.20 -18.76 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.77 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.39 14.25 8.61 -92.71 -0.80 13.45 16 33 H 0.11 4.29 6.07 -2.91 -0.02 4.27 16 34 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.09 4.45 8.06 -2.91 -0.02 4.42 16 36 H 0.28 13.91 8.30 -92.71 -0.77 13.14 16 37 H 0.10 5.58 6.17 -2.91 -0.02 5.57 16 38 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.06 1.94 7.69 -2.38 -0.02 1.93 16 40 H 0.34 7.23 8.79 -89.70 -0.79 6.44 16 Total: -1.00 -61.21 318.30 0.25 -60.96 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -0.55 Total: 42.16 kcal Atomic # 6 Polarization: -55.64 SS G_CDS: 3.40 Total: -52.23 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -4.63 Total: -92.42 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -61.21 0.25 -60.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399134778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.075 kcal (2) G-P(sol) polarization free energy of solvation -61.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds