Wall clock time and date at job start Mon Mar 30 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.45561 * 2 1 4 4 C 1.53035 * 109.46549 * 119.97215 * 2 1 3 5 5 C 1.53120 * 109.28261 * 179.19486 * 4 2 1 6 6 C 1.53114 * 109.15771 * 302.34497 * 5 4 2 7 7 H 1.09003 * 109.53937 * 297.69455 * 6 5 4 8 8 N 1.46502 * 109.50115 * 177.59464 * 6 5 4 9 9 C 1.39686 * 120.00070 * 155.19943 * 8 6 5 10 10 C 1.39341 * 119.94971 * 359.97438 * 9 8 6 11 11 C 1.38474 * 120.42309 * 180.28268 * 10 9 8 12 12 C 1.37687 * 120.32551 * 359.43423 * 11 10 9 13 13 C 1.40752 * 119.89463 * 0.58593 * 12 11 10 14 14 C 1.41404 * 120.21352 * 179.67792 * 13 12 11 15 15 H 1.08002 * 119.99684 * 24.44380 * 14 13 12 16 16 C 1.39933 * 120.00202 * 204.44774 * 14 13 12 17 17 N 1.30836 * 119.99708 * 17.87135 * 16 14 13 18 18 Si 1.86794 * 120.00124 * 197.86650 * 16 14 13 19 19 H 1.48502 * 109.47228 * 90.00193 * 18 16 14 20 20 H 1.48495 * 109.47345 * 209.99889 * 18 16 14 21 21 H 1.48506 * 109.47143 * 330.00397 * 18 16 14 22 22 C 1.38277 * 119.95536 * 180.02562 * 9 8 6 23 23 C 1.53034 * 109.28009 * 57.65440 * 6 5 4 24 24 N 1.46843 * 109.46222 * 240.02441 * 2 1 3 25 25 H 1.09000 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46966 * 299.97937 * 1 2 3 27 27 H 1.09003 * 109.47357 * 59.97150 * 1 2 3 28 28 H 1.09007 * 109.50238 * 299.13696 * 4 2 1 29 29 H 1.09002 * 109.50456 * 59.24636 * 4 2 1 30 30 H 1.08996 * 109.52173 * 182.43980 * 5 4 2 31 31 H 1.09000 * 109.52229 * 62.25136 * 5 4 2 32 32 H 0.96994 * 120.00424 * 335.19692 * 8 6 5 33 33 H 1.08000 * 119.78948 * 359.97438 * 10 9 8 34 34 H 1.08006 * 119.83796 * 179.70237 * 11 10 9 35 35 H 1.08000 * 120.05593 * 180.27910 * 12 11 10 36 36 H 0.96999 * 119.99832 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.15655 * 359.97353 * 22 9 8 38 38 H 1.09005 * 109.46446 * 60.83586 * 23 6 5 39 39 H 1.09004 * 109.46316 * 180.80345 * 23 6 5 40 40 H 1.00906 * 111.00514 * 54.14607 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7208 1.2499 5 6 3.5710 -0.7360 1.2356 6 6 4.0547 -1.4188 -0.0467 7 1 3.7130 -2.4538 -0.0598 8 7 5.5186 -1.3864 -0.0957 9 6 6.2139 -2.3438 -0.8380 10 6 5.5142 -3.3295 -1.5311 11 6 6.1938 -4.2869 -2.2653 12 6 7.5691 -4.2682 -2.3278 13 6 8.2896 -3.2789 -1.6326 14 6 9.7024 -3.2575 -1.6866 15 1 10.2176 -3.7045 -2.5240 16 6 10.4331 -2.6572 -0.6551 17 7 9.8666 -2.4321 0.5025 18 14 12.2171 -2.1773 -0.9310 19 1 12.2814 -0.7873 -1.4496 20 1 12.9566 -2.2608 0.3540 21 1 12.8318 -3.1024 -1.9168 22 6 7.5956 -2.3127 -0.8832 23 6 3.4864 -0.6777 -1.2590 24 7 2.0192 -0.6918 -1.1993 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3634 0.5143 -0.8897 28 1 1.6895 -0.1981 2.1399 29 1 1.6658 -1.7446 1.2577 30 1 3.9379 -1.2862 2.1020 31 1 3.9457 0.2871 1.2672 32 1 6.0050 -0.7002 0.3873 33 1 4.4351 -3.3500 -1.4914 34 1 5.6422 -5.0496 -2.7950 35 1 8.0946 -5.0143 -2.9054 36 1 10.3729 -2.0156 1.2174 37 1 8.1389 -1.5494 -0.3460 38 1 3.8403 0.3532 -1.2532 39 1 3.8174 -1.1700 -2.1735 40 1 1.6195 -0.2926 -2.0355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399134779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:53 Heat of formation + Delta-G solvation = 8.680656 kcal Electronic energy + Delta-G solvation = -19270.025630 eV Core-core repulsion = 16469.184564 eV Total energy + Delta-G solvation = -2800.841066 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.12555 -37.44119 -34.86051 -33.29794 -31.82459 -31.16646 -29.38490 -27.79137 -25.62455 -25.07873 -23.43550 -21.65707 -20.96838 -19.85781 -19.45774 -17.21857 -16.43420 -15.64371 -15.09360 -14.75262 -14.63192 -14.23351 -14.10591 -13.70689 -13.40859 -12.79937 -12.73408 -12.36933 -12.20182 -12.09441 -11.93514 -11.69720 -11.31473 -11.04163 -11.01500 -10.92304 -10.65816 -10.39509 -10.35568 -10.20673 -9.56518 -9.37829 -9.21372 -8.75412 -8.38884 -7.25919 -6.69227 -6.12219 -4.26868 2.90148 3.11972 3.15754 3.27888 3.38037 3.99161 4.00814 4.49814 4.74861 4.77438 4.89840 4.98216 5.20821 5.36746 5.51417 5.56044 5.62182 5.70125 5.83022 5.87864 5.88811 6.00160 6.05056 6.10270 6.34342 6.39397 6.44510 6.71389 6.91997 7.06042 7.17064 7.19633 7.39748 7.43894 7.49708 7.86972 8.02123 8.17009 8.22310 8.53963 8.76148 8.88824 9.05836 9.17097 10.29666 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033699 B = 0.004408 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.692341 B = 6351.089999 C = 6859.792976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.081 3.919 3 H 0.034 0.966 4 C -0.107 4.107 5 C -0.129 4.129 6 C 0.166 3.834 7 H 0.082 0.918 8 N -0.755 5.755 9 C 0.215 3.785 10 C -0.298 4.298 11 C -0.066 4.066 12 C -0.258 4.258 13 C 0.139 3.861 14 C -0.466 4.466 15 H 0.076 0.924 16 C 0.078 3.922 17 N -0.793 5.793 18 Si 0.904 3.096 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.263 1.263 22 C -0.231 4.231 23 C 0.045 3.955 24 N -0.684 5.684 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.388 0.612 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.277 0.723 37 H 0.116 0.884 38 H 0.026 0.974 39 H 0.081 0.919 40 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.664 6.371 1.622 14.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 H 0.052 0.948 4 C -0.146 4.146 5 C -0.167 4.167 6 C 0.059 3.941 7 H 0.100 0.900 8 N -0.388 5.388 9 C 0.117 3.883 10 C -0.320 4.320 11 C -0.085 4.085 12 C -0.278 4.278 13 C 0.136 3.864 14 C -0.496 4.496 15 H 0.094 0.906 16 C -0.139 4.139 17 N -0.419 5.419 18 Si 0.729 3.271 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.187 1.187 22 C -0.255 4.255 23 C -0.086 4.086 24 N -0.316 5.316 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.221 0.779 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.134 0.866 38 H 0.044 0.956 39 H 0.100 0.900 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.806 5.756 2.122 14.199 hybrid contribution 1.214 1.445 -0.101 1.890 sum -11.591 7.201 2.021 13.795 Atomic orbital electron populations 1.21818 0.94578 1.02551 1.01341 1.21493 0.94865 0.95115 0.91421 0.94836 1.21566 0.95071 1.01523 0.96400 1.21857 0.95627 1.00748 0.98468 1.20557 0.81560 0.99718 0.92284 0.90032 1.44461 1.03281 1.33987 1.57060 1.17657 0.91332 0.88417 0.90905 1.19968 0.96954 1.02886 1.12227 1.20294 0.94212 0.96537 0.97470 1.20857 0.93214 1.02697 1.11080 1.17315 0.92856 0.88154 0.88124 1.19559 0.91500 1.32915 1.05624 0.90625 1.25866 1.00460 0.93402 0.94184 1.69876 1.38324 1.31805 1.01892 0.86390 0.82255 0.79885 0.78586 1.19455 1.20488 1.18698 1.20727 0.89916 1.04116 1.10750 1.22502 0.86288 0.98819 1.01014 1.60276 1.07749 1.59153 1.04403 0.91690 0.92332 0.92952 0.91635 0.90921 0.91219 0.92298 0.77884 0.89198 0.89676 0.89473 0.91270 0.86620 0.95620 0.90038 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.43 37.15 0.35 -0.91 16 2 C 0.08 0.87 3.04 -67.73 -0.21 0.67 16 3 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 4 C -0.11 -1.20 5.37 -26.65 -0.14 -1.34 16 5 C -0.13 -1.70 5.47 -26.61 -0.15 -1.84 16 6 C 0.17 2.66 2.31 -67.85 -0.16 2.51 16 7 H 0.08 1.46 6.48 -51.93 -0.34 1.13 16 8 N -0.76 -14.50 5.25 -52.14 -0.27 -14.77 16 9 C 0.22 5.05 6.63 -83.85 -0.56 4.49 16 10 C -0.30 -6.86 8.86 -39.08 -0.35 -7.20 16 11 C -0.07 -1.56 10.01 -39.70 -0.40 -1.96 16 12 C -0.26 -6.62 9.79 -38.83 -0.38 -7.00 16 13 C 0.14 3.81 5.57 -106.85 -0.60 3.22 16 14 C -0.47 -12.74 9.05 -37.74 -0.34 -13.09 16 15 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 16 C 0.08 2.01 5.14 -17.34 -0.09 1.92 16 17 N -0.79 -20.91 10.95 55.55 0.61 -20.30 16 18 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 22 C -0.23 -6.10 8.53 -38.68 -0.33 -6.43 16 23 C 0.04 0.66 6.06 -3.83 -0.02 0.64 16 24 N -0.68 -8.44 6.50 -106.76 -0.69 -9.14 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.39 7.14 8.61 -40.82 -0.35 6.79 16 33 H 0.09 1.91 6.07 -52.49 -0.32 1.59 16 34 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 35 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 37 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 1.36 7.69 -51.93 -0.40 0.96 16 40 H 0.34 3.65 8.79 -39.29 -0.35 3.30 16 LS Contribution 318.28 15.07 4.80 4.80 Total: -1.00 -28.05 318.28 -10.23 -38.27 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -6.27 Total: 13.39 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -3.36 Total: -26.33 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.36 Total: -44.21 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.05 -10.23 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399134779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.953 kcal (2) G-P(sol) polarization free energy of solvation -28.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds