Wall clock time and date at job start Mon Mar 30 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.45561 * 2 1 4 4 C 1.53035 * 109.46549 * 119.97215 * 2 1 3 5 5 C 1.53120 * 109.28261 * 179.19486 * 4 2 1 6 6 C 1.53114 * 109.15771 * 302.34497 * 5 4 2 7 7 H 1.09003 * 109.53937 * 297.69455 * 6 5 4 8 8 N 1.46502 * 109.50115 * 177.59464 * 6 5 4 9 9 C 1.39686 * 120.00070 * 155.19943 * 8 6 5 10 10 C 1.39341 * 119.94971 * 359.97438 * 9 8 6 11 11 C 1.38474 * 120.42309 * 180.28268 * 10 9 8 12 12 C 1.37687 * 120.32551 * 359.43423 * 11 10 9 13 13 C 1.40752 * 119.89463 * 0.58593 * 12 11 10 14 14 C 1.41404 * 120.21352 * 179.67792 * 13 12 11 15 15 H 1.08002 * 119.99684 * 24.44380 * 14 13 12 16 16 C 1.39933 * 120.00202 * 204.44774 * 14 13 12 17 17 N 1.30836 * 119.99708 * 17.87135 * 16 14 13 18 18 Si 1.86794 * 120.00124 * 197.86650 * 16 14 13 19 19 H 1.48502 * 109.47228 * 90.00193 * 18 16 14 20 20 H 1.48495 * 109.47345 * 209.99889 * 18 16 14 21 21 H 1.48506 * 109.47143 * 330.00397 * 18 16 14 22 22 C 1.38277 * 119.95536 * 180.02562 * 9 8 6 23 23 C 1.53034 * 109.28009 * 57.65440 * 6 5 4 24 24 N 1.46843 * 109.46222 * 240.02441 * 2 1 3 25 25 H 1.09000 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46966 * 299.97937 * 1 2 3 27 27 H 1.09003 * 109.47357 * 59.97150 * 1 2 3 28 28 H 1.09007 * 109.50238 * 299.13696 * 4 2 1 29 29 H 1.09002 * 109.50456 * 59.24636 * 4 2 1 30 30 H 1.08996 * 109.52173 * 182.43980 * 5 4 2 31 31 H 1.09000 * 109.52229 * 62.25136 * 5 4 2 32 32 H 0.96994 * 120.00424 * 335.19692 * 8 6 5 33 33 H 1.08000 * 119.78948 * 359.97438 * 10 9 8 34 34 H 1.08006 * 119.83796 * 179.70237 * 11 10 9 35 35 H 1.08000 * 120.05593 * 180.27910 * 12 11 10 36 36 H 0.96999 * 119.99832 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.15655 * 359.97353 * 22 9 8 38 38 H 1.09005 * 109.46446 * 60.83586 * 23 6 5 39 39 H 1.09004 * 109.46316 * 180.80345 * 23 6 5 40 40 H 1.00906 * 111.00514 * 54.14607 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7208 1.2499 5 6 3.5710 -0.7360 1.2356 6 6 4.0547 -1.4188 -0.0467 7 1 3.7130 -2.4538 -0.0598 8 7 5.5186 -1.3864 -0.0957 9 6 6.2139 -2.3438 -0.8380 10 6 5.5142 -3.3295 -1.5311 11 6 6.1938 -4.2869 -2.2653 12 6 7.5691 -4.2682 -2.3278 13 6 8.2896 -3.2789 -1.6326 14 6 9.7024 -3.2575 -1.6866 15 1 10.2176 -3.7045 -2.5240 16 6 10.4331 -2.6572 -0.6551 17 7 9.8666 -2.4321 0.5025 18 14 12.2171 -2.1773 -0.9310 19 1 12.2814 -0.7873 -1.4496 20 1 12.9566 -2.2608 0.3540 21 1 12.8318 -3.1024 -1.9168 22 6 7.5956 -2.3127 -0.8832 23 6 3.4864 -0.6777 -1.2590 24 7 2.0192 -0.6918 -1.1993 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3634 0.5143 -0.8897 28 1 1.6895 -0.1981 2.1399 29 1 1.6658 -1.7446 1.2577 30 1 3.9379 -1.2862 2.1020 31 1 3.9457 0.2871 1.2672 32 1 6.0050 -0.7002 0.3873 33 1 4.4351 -3.3500 -1.4914 34 1 5.6422 -5.0496 -2.7950 35 1 8.0946 -5.0143 -2.9054 36 1 10.3729 -2.0156 1.2174 37 1 8.1389 -1.5494 -0.3460 38 1 3.8403 0.3532 -1.2532 39 1 3.8174 -1.1700 -2.1735 40 1 1.6195 -0.2926 -2.0355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399134779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:52 Heat of formation + Delta-G solvation = -8.293521 kcal Electronic energy + Delta-G solvation = -19270.761686 eV Core-core repulsion = 16469.184564 eV Total energy + Delta-G solvation = -2801.577122 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.39712 -39.10647 -36.41678 -35.12438 -32.86648 -32.46235 -31.33919 -29.28142 -27.20309 -26.71074 -24.51824 -23.13390 -22.51106 -21.54043 -20.67355 -19.09483 -17.76564 -17.32543 -16.58017 -16.35760 -16.04542 -15.58946 -15.16696 -14.98816 -14.80609 -14.43695 -14.16775 -13.99956 -13.66035 -13.36599 -13.11781 -12.98406 -12.77643 -12.71442 -12.55191 -12.16712 -12.07183 -11.86984 -11.66160 -11.41400 -11.35916 -11.24836 -11.05455 -10.50767 -9.40855 -9.24426 -8.61802 -7.91754 -6.31459 1.08885 1.33897 1.38565 1.51537 1.58867 2.23328 2.67289 2.81713 3.36148 3.78332 3.84738 3.89262 3.98583 4.21981 4.34083 4.45844 4.51530 4.58576 4.68231 4.76677 4.82885 4.89470 4.95901 5.00604 5.04991 5.05931 5.20368 5.25909 5.30792 5.33014 5.41887 5.47690 5.61070 5.95810 6.04858 6.13693 6.22386 6.29312 6.48614 6.59008 6.94857 7.05377 7.07006 7.25824 8.38840 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033699 B = 0.004408 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.692341 B = 6351.089999 C = 6859.792976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.078 3.922 3 H 0.036 0.964 4 C -0.104 4.104 5 C -0.123 4.123 6 C 0.164 3.836 7 H 0.065 0.935 8 N -0.749 5.749 9 C 0.222 3.778 10 C -0.299 4.299 11 C -0.063 4.063 12 C -0.285 4.285 13 C 0.109 3.891 14 C -0.505 4.505 15 H 0.071 0.929 16 C 0.038 3.962 17 N -0.822 5.822 18 Si 0.980 3.020 19 H -0.263 1.263 20 H -0.268 1.268 21 H -0.260 1.260 22 C -0.259 4.259 23 C 0.055 3.945 24 N -0.686 5.686 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.391 0.609 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.285 0.715 37 H 0.100 0.900 38 H 0.025 0.975 39 H 0.059 0.941 40 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.017 7.391 2.122 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.031 4.031 3 H 0.054 0.946 4 C -0.142 4.142 5 C -0.162 4.162 6 C 0.058 3.942 7 H 0.083 0.917 8 N -0.380 5.380 9 C 0.121 3.879 10 C -0.322 4.322 11 C -0.082 4.082 12 C -0.306 4.306 13 C 0.106 3.894 14 C -0.535 4.535 15 H 0.089 0.911 16 C -0.177 4.177 17 N -0.448 5.448 18 Si 0.801 3.199 19 H -0.188 1.188 20 H -0.192 1.192 21 H -0.184 1.184 22 C -0.283 4.283 23 C -0.076 4.076 24 N -0.319 5.319 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.225 0.775 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.043 0.957 39 H 0.078 0.922 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.211 6.792 2.630 15.969 hybrid contribution 1.483 1.126 -0.227 1.876 sum -12.728 7.918 2.404 15.182 Atomic orbital electron populations 1.21771 0.92635 1.02642 1.02625 1.21601 0.96362 0.94854 0.90299 0.94563 1.21587 0.93133 1.01714 0.97761 1.21820 0.97327 1.00595 0.96409 1.20719 0.79408 0.99422 0.94663 0.91731 1.44562 1.04752 1.32871 1.55839 1.17744 0.90755 0.88953 0.90444 1.20233 0.97946 1.02391 1.11602 1.20642 0.93625 0.97015 0.96885 1.21011 0.94369 1.03062 1.12125 1.17706 0.93611 0.89046 0.89026 1.19811 0.92103 1.35062 1.06513 0.91072 1.26708 1.05058 0.92577 0.93364 1.69929 1.40317 1.31937 1.02627 0.85243 0.76298 0.79502 0.78847 1.18793 1.19212 1.18375 1.20657 0.91184 1.04388 1.12071 1.22223 0.88074 0.98156 0.99117 1.60254 1.05935 1.59974 1.05761 0.92166 0.90714 0.92085 0.89211 0.91481 0.91629 0.91558 0.77517 0.87193 0.86555 0.89239 0.90472 0.88229 0.95656 0.92209 0.83091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.43 71.98 0.68 -1.29 16 2 C 0.08 1.47 3.04 44.94 0.14 1.61 16 3 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 4 C -0.10 -2.03 5.37 30.65 0.16 -1.87 16 5 C -0.12 -3.03 5.47 30.67 0.17 -2.87 16 6 C 0.16 5.11 2.31 45.04 0.10 5.21 16 7 H 0.06 2.26 6.48 -2.39 -0.02 2.24 16 8 N -0.75 -28.73 5.25 -318.87 -1.67 -30.40 16 9 C 0.22 10.54 6.63 38.16 0.25 10.80 16 10 C -0.30 -13.68 8.86 22.59 0.20 -13.48 16 11 C -0.06 -2.95 10.01 22.20 0.22 -2.73 16 12 C -0.28 -15.00 9.79 22.75 0.22 -14.77 16 13 C 0.11 6.23 5.57 -21.31 -0.12 6.11 16 14 C -0.51 -28.67 9.05 23.46 0.21 -28.45 16 15 H 0.07 3.93 7.91 -2.91 -0.02 3.90 16 16 C 0.04 1.97 5.14 85.25 0.44 2.41 16 17 N -0.82 -44.33 10.95 21.82 0.24 -44.09 16 18 Si 0.98 39.61 29.59 68.60 2.03 41.64 16 19 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 20 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 21 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 22 C -0.26 -14.12 8.53 22.86 0.20 -13.93 16 23 C 0.06 1.58 6.06 86.32 0.52 2.10 16 24 N -0.69 -15.57 6.50 -491.69 -3.20 -18.77 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.39 14.46 8.61 -92.71 -0.80 13.67 16 33 H 0.11 4.54 6.07 -2.91 -0.02 4.53 16 34 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 35 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 36 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 37 H 0.10 5.66 6.16 -2.91 -0.02 5.64 16 38 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.06 1.96 7.69 -2.38 -0.02 1.94 16 40 H 0.35 6.78 8.79 -89.69 -0.79 5.99 16 Total: -1.00 -61.82 318.28 0.25 -61.58 By element: Atomic # 1 Polarization: 41.74 SS G_CDS: -0.55 Total: 41.20 kcal Atomic # 6 Polarization: -54.55 SS G_CDS: 3.40 Total: -51.14 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -4.63 Total: -93.26 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -61.82 0.25 -61.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399134779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.282 kcal (2) G-P(sol) polarization free energy of solvation -61.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds