Wall clock time and date at job start Mon Mar 30 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.45523 * 2 1 4 4 C 1.53042 * 109.46053 * 119.96726 * 2 1 3 5 5 C 1.53116 * 109.31027 * 179.21441 * 4 2 1 6 6 C 1.53122 * 109.16350 * 302.32617 * 5 4 2 7 7 H 1.08989 * 109.50226 * 177.63099 * 6 5 4 8 8 N 1.46494 * 109.50414 * 297.71566 * 6 5 4 9 9 C 1.39687 * 120.00076 * 204.99730 * 8 6 5 10 10 C 1.39333 * 119.94766 * 359.97438 * 9 8 6 11 11 C 1.38486 * 120.41992 * 180.02562 * 10 9 8 12 12 C 1.37685 * 120.32509 * 359.97438 * 11 10 9 13 13 C 1.40754 * 119.89525 * 0.02562 * 12 11 10 14 14 C 1.41402 * 120.20516 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00430 * 24.32733 * 14 13 12 16 16 C 1.39934 * 119.99564 * 204.33145 * 14 13 12 17 17 N 1.30832 * 120.00104 * 17.73016 * 16 14 13 18 18 Si 1.86803 * 119.99927 * 197.73345 * 16 14 13 19 19 H 1.48499 * 109.47147 * 89.99894 * 18 16 14 20 20 H 1.48501 * 109.47194 * 210.00281 * 18 16 14 21 21 H 1.48508 * 109.46716 * 329.99906 * 18 16 14 22 22 C 1.38277 * 119.95214 * 179.72761 * 9 8 6 23 23 C 1.53042 * 109.27249 * 57.65240 * 6 5 4 24 24 N 1.46847 * 109.52729 * 300.82077 * 23 6 5 25 25 H 1.09004 * 109.47401 * 300.03114 * 1 2 3 26 26 H 1.09001 * 109.47128 * 60.02965 * 1 2 3 27 27 H 1.09004 * 109.47384 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.50111 * 59.25385 * 4 2 1 29 29 H 1.09001 * 109.50125 * 299.18039 * 4 2 1 30 30 H 1.09003 * 109.52171 * 62.23680 * 5 4 2 31 31 H 1.09000 * 109.52376 * 182.42037 * 5 4 2 32 32 H 0.97004 * 119.99952 * 24.99744 * 8 6 5 33 33 H 1.08001 * 119.78929 * 0.02562 * 10 9 8 34 34 H 1.07997 * 119.83152 * 180.02562 * 11 10 9 35 35 H 1.08003 * 120.04718 * 180.02562 * 12 11 10 36 36 H 0.97002 * 119.99380 * 179.97438 * 17 16 14 37 37 H 1.08003 * 120.15946 * 359.97215 * 22 9 8 38 38 H 1.08999 * 109.46153 * 60.84471 * 23 6 5 39 39 H 1.09004 * 109.45907 * 180.80516 * 23 6 5 40 40 H 1.00901 * 110.99477 * 297.64749 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5709 -0.7360 1.2367 6 6 4.0556 -1.4192 -0.0450 7 1 5.1447 -1.3956 -0.0804 8 7 3.5956 -2.8099 -0.0620 9 6 4.2946 -3.7678 -0.8003 10 6 5.4289 -3.3992 -1.5206 11 6 6.1290 -4.3408 -2.2562 12 6 5.7115 -5.6525 -2.2833 13 6 4.5673 -6.0397 -1.5607 14 6 4.1324 -7.3849 -1.5844 15 1 4.8351 -8.1760 -1.8009 16 6 2.7914 -7.6912 -1.3272 17 7 1.8797 -6.7564 -1.4081 18 14 2.3031 -9.4349 -0.8685 19 1 2.3641 -9.5942 0.6067 20 1 0.9198 -9.7015 -1.3384 21 1 3.2372 -10.3954 -1.5091 22 6 3.8627 -5.0813 -0.8111 23 6 3.4880 -0.6784 -1.2580 24 7 2.0208 -0.6924 -1.1993 25 1 -0.3634 0.5143 0.8897 26 1 -0.3633 0.5134 -0.8903 27 1 -0.3634 -1.0277 0.0005 28 1 1.6658 -1.7446 1.2578 29 1 1.6887 -0.1984 2.1400 30 1 3.9456 0.2872 1.2684 31 1 3.9373 -1.2859 2.1036 32 1 2.8055 -3.0656 0.4394 33 1 5.7643 -2.3728 -1.5050 34 1 7.0072 -4.0448 -2.8107 35 1 6.2611 -6.3832 -2.8582 36 1 0.9502 -6.9689 -1.2302 37 1 2.9861 -5.3690 -0.2496 38 1 3.8420 0.3525 -1.2522 39 1 3.8197 -1.1709 -2.1721 40 1 1.6663 -1.6361 -1.2424 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399134783.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:59 Heat of formation + Delta-G solvation = -7.344147 kcal Electronic energy + Delta-G solvation = -19685.611605 eV Core-core repulsion = 16884.075652 eV Total energy + Delta-G solvation = -2801.535954 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.69778 -39.07377 -36.15315 -35.00983 -32.56485 -32.50951 -31.33341 -29.04161 -27.52341 -26.94649 -24.31406 -23.07738 -22.39616 -22.03708 -20.52333 -18.96129 -17.83103 -16.82481 -16.66268 -16.21196 -16.09291 -15.91071 -15.38557 -14.80986 -14.74314 -14.44670 -14.06148 -13.72889 -13.64815 -13.33843 -12.91870 -12.86591 -12.78899 -12.74697 -12.49907 -12.33232 -12.09073 -11.99283 -11.71960 -11.51246 -11.32538 -11.24098 -11.11532 -10.61639 -9.24083 -9.22344 -8.61430 -7.86969 -6.31496 1.08986 1.34553 1.37729 1.50350 1.58454 2.22581 2.76978 2.83839 3.37484 3.79911 3.85402 3.88211 4.03983 4.19108 4.41310 4.46507 4.49462 4.60530 4.65356 4.78090 4.85241 4.95027 4.97106 4.98789 5.01901 5.10905 5.16929 5.21331 5.31198 5.32672 5.34134 5.47157 5.61563 5.96911 6.12073 6.18889 6.22504 6.30663 6.41117 6.59475 6.95034 7.05977 7.06881 7.25509 8.38328 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021061 B = 0.005797 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.159331 B = 4828.971192 C = 5702.747258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.082 3.918 3 H 0.089 0.911 4 C -0.148 4.148 5 C -0.118 4.118 6 C 0.120 3.880 7 H 0.072 0.928 8 N -0.744 5.744 9 C 0.225 3.775 10 C -0.299 4.299 11 C -0.064 4.064 12 C -0.287 4.287 13 C 0.109 3.891 14 C -0.505 4.505 15 H 0.069 0.931 16 C 0.038 3.962 17 N -0.820 5.820 18 Si 0.978 3.022 19 H -0.264 1.264 20 H -0.268 1.268 21 H -0.261 1.261 22 C -0.259 4.259 23 C 0.050 3.950 24 N -0.686 5.686 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.387 0.613 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.284 0.716 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.250 12.440 5.902 13.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.027 4.027 3 H 0.107 0.893 4 C -0.187 4.187 5 C -0.156 4.156 6 C 0.013 3.987 7 H 0.090 0.910 8 N -0.376 5.376 9 C 0.124 3.876 10 C -0.322 4.322 11 C -0.082 4.082 12 C -0.308 4.308 13 C 0.106 3.894 14 C -0.535 4.535 15 H 0.087 0.913 16 C -0.177 4.177 17 N -0.446 5.446 18 Si 0.799 3.201 19 H -0.188 1.188 20 H -0.192 1.192 21 H -0.184 1.184 22 C -0.283 4.283 23 C -0.082 4.082 24 N -0.315 5.315 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.221 0.779 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.473 13.235 5.457 14.528 hybrid contribution -0.249 -1.908 0.766 2.071 sum -2.722 11.327 6.223 13.207 Atomic orbital electron populations 1.21776 0.93937 1.01609 1.02568 1.21674 0.95633 0.98236 0.87203 0.89292 1.22246 0.95520 1.00647 1.00266 1.21779 0.96161 1.01523 0.96101 1.21556 0.99114 0.81418 0.96645 0.90975 1.44591 1.31717 1.06252 1.55042 1.17716 0.90961 0.88397 0.90560 1.20231 1.01282 0.99144 1.11497 1.20649 0.97892 0.92734 0.96945 1.21008 1.03882 0.96336 1.09564 1.17700 0.90570 0.93440 0.87693 1.19794 0.95059 0.93453 1.45203 0.91251 1.26679 0.95833 1.03351 0.91815 1.69924 1.02574 1.36745 1.35309 0.85274 0.78118 0.77304 0.79385 1.18837 1.19214 1.18438 1.20628 1.05820 0.92130 1.09734 1.22384 0.88080 1.00382 0.97318 1.60794 1.08531 1.22388 1.39783 0.90447 0.92230 0.93875 0.93561 0.89587 0.88757 0.91893 0.77857 0.86822 0.86575 0.89482 0.90532 0.88450 0.89044 0.92741 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.47 71.98 0.68 -2.05 16 2 C 0.08 1.74 3.04 44.92 0.14 1.87 16 3 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 4 C -0.15 -3.03 5.17 30.65 0.16 -2.87 16 5 C -0.12 -2.54 5.66 30.67 0.17 -2.36 16 6 C 0.12 3.35 2.50 45.05 0.11 3.47 16 7 H 0.07 2.11 6.47 -2.39 -0.02 2.09 16 8 N -0.74 -26.82 4.59 -318.88 -1.46 -28.28 16 9 C 0.22 10.28 6.63 38.16 0.25 10.54 16 10 C -0.30 -13.09 8.88 22.59 0.20 -12.89 16 11 C -0.06 -2.90 10.02 22.20 0.22 -2.68 16 12 C -0.29 -14.97 9.79 22.75 0.22 -14.74 16 13 C 0.11 6.16 5.57 -21.31 -0.12 6.05 16 14 C -0.51 -28.57 9.05 23.46 0.21 -28.36 16 15 H 0.07 3.83 7.91 -2.91 -0.02 3.81 16 16 C 0.04 1.99 5.14 85.25 0.44 2.43 16 17 N -0.82 -43.85 10.96 21.82 0.24 -43.61 16 18 Si 0.98 39.59 29.59 68.60 2.03 41.62 16 19 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 20 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 22 C -0.26 -13.88 8.53 22.86 0.19 -13.69 16 23 C 0.05 1.36 6.16 86.33 0.53 1.89 16 24 N -0.69 -18.72 6.49 -491.49 -3.19 -21.91 16 25 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 1.12 6.68 -2.39 -0.02 1.11 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.39 13.91 7.03 -92.71 -0.65 13.26 16 33 H 0.11 4.31 6.12 -2.91 -0.02 4.29 16 34 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 35 H 0.09 4.37 8.06 -2.91 -0.02 4.34 16 36 H 0.28 13.76 8.30 -92.71 -0.77 12.99 16 37 H 0.10 5.47 6.16 -2.91 -0.02 5.45 16 38 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 1.79 7.75 -2.38 -0.02 1.77 16 40 H 0.33 10.65 8.24 -89.69 -0.74 9.91 16 Total: -1.00 -60.22 314.46 0.68 -59.53 By element: Atomic # 1 Polarization: 46.40 SS G_CDS: -0.35 Total: 46.05 kcal Atomic # 6 Polarization: -56.82 SS G_CDS: 3.42 Total: -53.40 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -4.42 Total: -93.80 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -60.22 0.68 -59.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399134783.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.188 kcal (2) G-P(sol) polarization free energy of solvation -60.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds