Wall clock time and date at job start Mon Mar 30 2020 06:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.47148 * 2 1 4 4 N 1.46503 * 109.46982 * 239.99603 * 2 1 3 5 5 C 1.39688 * 119.99627 * 85.00054 * 4 2 1 6 6 C 1.39330 * 119.95107 * 359.97438 * 5 4 2 7 7 C 1.38487 * 120.42240 * 179.97438 * 6 5 4 8 8 C 1.37687 * 120.32279 * 359.97438 * 7 6 5 9 9 C 1.40745 * 119.89300 * 0.02562 * 8 7 6 10 10 C 1.41407 * 120.20571 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00235 * 25.01297 * 10 9 8 12 12 C 1.39936 * 120.00464 * 205.00641 * 10 9 8 13 13 N 1.30827 * 119.99302 * 17.82496 * 12 10 9 14 14 Si 1.86795 * 120.00598 * 197.82456 * 12 10 9 15 15 H 1.48501 * 109.46850 * 89.99646 * 14 12 10 16 16 H 1.48489 * 109.47340 * 210.00013 * 14 12 10 17 17 H 1.48505 * 109.46701 * 330.00243 * 14 12 10 18 18 C 1.38278 * 119.94810 * 179.72566 * 5 4 2 19 19 C 1.53003 * 109.46726 * 120.00206 * 2 1 3 20 20 H 1.08998 * 110.63394 * 64.13327 * 19 2 1 21 21 C 1.55143 * 110.69991 * 187.24000 * 19 2 1 22 22 C 1.55378 * 101.43985 * 154.11556 * 21 19 2 23 23 N 1.47850 * 104.83839 * 322.95083 * 22 21 19 24 24 C 1.47454 * 108.56233 * 24.10197 * 23 22 21 25 25 H 1.09001 * 109.46825 * 185.64858 * 1 2 3 26 26 H 1.08997 * 109.46867 * 305.64456 * 1 2 3 27 27 H 1.09000 * 109.47171 * 65.64744 * 1 2 3 28 28 H 0.96996 * 120.00022 * 265.00085 * 4 2 1 29 29 H 1.07996 * 119.79046 * 359.97438 * 6 5 4 30 30 H 1.07997 * 119.83414 * 180.02562 * 7 6 5 31 31 H 1.08005 * 120.04957 * 180.02562 * 8 7 6 32 32 H 0.96999 * 119.99740 * 180.02562 * 13 12 10 33 33 H 1.08002 * 120.16283 * 359.97438 * 18 5 4 34 34 H 1.09004 * 110.99040 * 272.29577 * 21 19 2 35 35 H 1.08995 * 110.99359 * 36.11723 * 21 19 2 36 36 H 1.09004 * 110.35099 * 204.11715 * 22 21 19 37 37 H 1.08993 * 110.45485 * 81.84749 * 22 21 19 38 38 H 1.00893 * 111.00105 * 146.36110 * 23 22 21 39 39 H 1.08998 * 109.88568 * 239.60303 * 24 23 22 40 40 H 1.09001 * 109.88758 * 118.41647 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1517 0.0061 -2.3994 6 6 1.8196 1.3579 -2.4610 7 6 1.9485 2.0583 -3.6487 8 6 2.4073 1.4259 -4.7824 9 6 2.7467 0.0608 -4.7354 10 6 3.2181 -0.5955 -5.8959 11 1 3.6974 -0.0282 -6.6801 12 6 3.0637 -1.9800 -6.0284 13 7 2.2000 -2.6163 -5.2796 14 14 4.0906 -2.9195 -7.2742 15 1 5.3526 -3.3714 -6.6352 16 1 3.3285 -4.0999 -7.7545 17 1 4.4073 -2.0336 -8.4233 18 6 2.6181 -0.6454 -3.5264 19 6 2.0400 -0.7213 1.2493 20 1 1.7484 -1.7714 1.2324 21 6 3.5801 -0.5815 1.3730 22 6 3.7812 -0.7337 2.9061 23 7 2.6198 -0.0468 3.5104 24 6 1.5203 -0.0312 2.5280 25 1 -0.3633 -1.0227 0.1012 26 1 -0.3633 0.5989 0.8351 27 1 -0.3633 0.4238 -0.9362 28 1 2.2490 -1.6318 -1.1525 29 1 1.4592 1.8626 -1.5769 30 1 1.6887 3.1059 -3.6855 31 1 2.5066 1.9765 -5.7062 32 1 2.0932 -3.5760 -5.3712 33 1 2.8801 -1.6921 -3.4787 34 1 4.0894 -1.3767 0.8283 35 1 3.9120 0.3986 1.0307 36 1 4.7095 -0.2537 3.2162 37 1 3.7874 -1.7869 3.1868 38 1 2.3349 -0.5017 4.3647 39 1 1.2367 0.9973 2.3052 40 1 0.6633 -0.5775 2.9220 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400391118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:19 Heat of formation + Delta-G solvation = 12.565926 kcal Electronic energy + Delta-G solvation = -19323.433182 eV Core-core repulsion = 16522.760594 eV Total energy + Delta-G solvation = -2800.672588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -39.15874 -37.58595 -35.28629 -33.38409 -31.33778 -29.72753 -29.38731 -27.83723 -26.95034 -25.13702 -22.67180 -21.21630 -21.19008 -19.97325 -19.54047 -17.26321 -16.75650 -16.05713 -15.45360 -14.84124 -14.48136 -14.19249 -13.63679 -13.48457 -12.90351 -12.75217 -12.59085 -12.57514 -12.47427 -12.14140 -11.75992 -11.55112 -11.35176 -11.18446 -11.02036 -10.91856 -10.65591 -10.58187 -10.43347 -10.25317 -9.57455 -9.38944 -9.22205 -8.73195 -8.57395 -7.27016 -6.70243 -6.11837 -4.28173 2.89277 3.11286 3.15079 3.26546 3.37257 3.99950 4.13835 4.20337 4.63293 4.71089 4.77242 4.99727 5.20546 5.33881 5.43588 5.48611 5.69189 5.71579 5.84773 5.88214 5.91771 6.01407 6.09597 6.22114 6.32368 6.33482 6.55597 6.68000 6.72102 6.92895 7.15210 7.17567 7.20721 7.41402 7.48076 7.85557 8.00084 8.15169 8.20909 8.53123 8.75316 8.87901 9.04687 9.15883 10.28893 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025202 B = 0.004812 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.771356 B = 5817.519630 C = 6356.940423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.170 3.830 3 H 0.076 0.924 4 N -0.754 5.754 5 C 0.219 3.781 6 C -0.299 4.299 7 C -0.066 4.066 8 C -0.258 4.258 9 C 0.140 3.860 10 C -0.467 4.467 11 H 0.076 0.924 12 C 0.079 3.921 13 N -0.794 5.794 14 Si 0.903 3.097 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.263 1.263 18 C -0.231 4.231 19 C -0.116 4.116 20 H 0.074 0.926 21 C -0.119 4.119 22 C 0.043 3.957 23 N -0.686 5.686 24 C 0.055 3.945 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.387 0.613 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.276 0.724 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.040 0.960 38 H 0.335 0.665 39 H 0.078 0.922 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 -0.189 13.095 13.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.063 3.937 3 H 0.094 0.906 4 N -0.386 5.386 5 C 0.121 3.879 6 C -0.322 4.322 7 C -0.085 4.085 8 C -0.279 4.279 9 C 0.137 3.863 10 C -0.497 4.497 11 H 0.094 0.906 12 C -0.138 4.138 13 N -0.420 5.420 14 Si 0.728 3.272 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.187 1.187 18 C -0.255 4.255 19 C -0.136 4.136 20 H 0.093 0.907 21 C -0.157 4.157 22 C -0.086 4.086 23 N -0.315 5.315 24 C -0.074 4.074 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.220 0.780 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.132 0.868 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.058 0.942 38 H 0.150 0.850 39 H 0.097 0.903 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.233 0.395 13.104 13.112 hybrid contribution 0.052 -1.881 -0.542 1.958 sum -0.181 -1.486 12.563 12.651 Atomic orbital electron populations 1.22342 0.96978 1.01386 1.02007 1.20574 0.92786 0.96510 0.83830 0.90639 1.44458 1.75694 1.11403 1.07048 1.17615 0.94437 0.90870 0.85022 1.19915 1.20819 0.93616 0.97816 1.20292 0.98293 0.96772 0.93177 1.20859 1.13552 0.96545 0.96894 1.17312 0.86597 0.90529 0.91905 1.19559 1.34634 0.91992 1.03481 0.90628 1.25856 0.93626 0.98178 0.96182 1.69872 1.26515 1.10087 1.35477 0.86398 0.80536 0.79120 0.81122 1.19434 1.20494 1.18686 1.20693 1.13439 1.00457 0.90944 1.22669 0.95939 0.99925 0.95050 0.90733 1.22785 0.95185 1.03168 0.94545 1.22940 0.94625 0.96311 0.94689 1.61880 1.06417 1.56530 1.06682 1.22617 0.92783 1.01046 0.90958 0.93150 0.92857 0.91679 0.78007 0.89527 0.89717 0.89478 0.91281 0.86766 0.90711 0.90338 0.90514 0.94198 0.84952 0.90334 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.06 37.16 0.34 -2.07 16 2 C 0.17 2.56 1.67 -67.92 -0.11 2.45 16 3 H 0.08 1.24 6.42 -51.93 -0.33 0.91 16 4 N -0.75 -13.96 5.08 -52.21 -0.27 -14.23 16 5 C 0.22 5.05 6.63 -83.86 -0.56 4.49 16 6 C -0.30 -6.77 8.86 -39.08 -0.35 -7.12 16 7 C -0.07 -1.55 10.02 -39.69 -0.40 -1.95 16 8 C -0.26 -6.58 9.79 -38.84 -0.38 -6.96 16 9 C 0.14 3.82 5.56 -106.85 -0.59 3.23 16 10 C -0.47 -12.71 9.05 -37.74 -0.34 -13.05 16 11 H 0.08 1.99 7.91 -52.48 -0.41 1.58 16 12 C 0.08 2.02 5.13 -17.34 -0.09 1.93 16 13 N -0.79 -20.84 11.01 55.55 0.61 -20.23 16 14 Si 0.90 19.04 29.59 -169.99 -5.03 14.01 16 15 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 16 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 17 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 18 C -0.23 -6.04 8.53 -38.68 -0.33 -6.37 16 19 C -0.12 -1.43 2.56 -88.79 -0.23 -1.65 16 20 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 21 C -0.12 -1.48 6.40 -24.34 -0.16 -1.63 16 22 C 0.04 0.46 7.59 -2.04 -0.02 0.44 16 23 N -0.69 -7.29 7.39 -110.50 -0.82 -8.11 16 24 C 0.06 0.61 6.25 -2.83 -0.02 0.59 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.64 7.19 -51.93 -0.37 0.26 16 27 H 0.06 1.09 7.80 -51.93 -0.41 0.68 16 28 H 0.39 6.93 8.61 -40.82 -0.35 6.58 16 29 H 0.09 1.78 6.18 -52.49 -0.32 1.45 16 30 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 32 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 33 H 0.11 3.08 6.22 -52.49 -0.33 2.75 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.10 8.01 -51.93 -0.42 0.68 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.34 2.89 8.91 -39.30 -0.35 2.54 16 39 H 0.08 0.91 7.41 -51.93 -0.38 0.52 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 319.39 15.07 4.81 4.81 Total: -1.00 -28.05 319.39 -10.11 -38.16 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -6.20 Total: 13.27 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -3.23 Total: -27.69 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.47 Total: -42.57 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.05 -10.11 -38.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400391118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.726 kcal (2) G-P(sol) polarization free energy of solvation -28.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds