Wall clock time and date at job start Mon Mar 30 2020 06:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.47148 * 2 1 4 4 N 1.46503 * 109.46982 * 239.99603 * 2 1 3 5 5 C 1.39688 * 119.99627 * 85.00054 * 4 2 1 6 6 C 1.39330 * 119.95107 * 359.97438 * 5 4 2 7 7 C 1.38487 * 120.42240 * 179.97438 * 6 5 4 8 8 C 1.37687 * 120.32279 * 359.97438 * 7 6 5 9 9 C 1.40745 * 119.89300 * 0.02562 * 8 7 6 10 10 C 1.41407 * 120.20571 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00235 * 25.01297 * 10 9 8 12 12 C 1.39936 * 120.00464 * 205.00641 * 10 9 8 13 13 N 1.30827 * 119.99302 * 17.82496 * 12 10 9 14 14 Si 1.86795 * 120.00598 * 197.82456 * 12 10 9 15 15 H 1.48501 * 109.46850 * 89.99646 * 14 12 10 16 16 H 1.48489 * 109.47340 * 210.00013 * 14 12 10 17 17 H 1.48505 * 109.46701 * 330.00243 * 14 12 10 18 18 C 1.38278 * 119.94810 * 179.72566 * 5 4 2 19 19 C 1.53003 * 109.46726 * 120.00206 * 2 1 3 20 20 H 1.08998 * 110.63394 * 64.13327 * 19 2 1 21 21 C 1.55143 * 110.69991 * 187.24000 * 19 2 1 22 22 C 1.55378 * 101.43985 * 154.11556 * 21 19 2 23 23 N 1.47850 * 104.83839 * 322.95083 * 22 21 19 24 24 C 1.47454 * 108.56233 * 24.10197 * 23 22 21 25 25 H 1.09001 * 109.46825 * 185.64858 * 1 2 3 26 26 H 1.08997 * 109.46867 * 305.64456 * 1 2 3 27 27 H 1.09000 * 109.47171 * 65.64744 * 1 2 3 28 28 H 0.96996 * 120.00022 * 265.00085 * 4 2 1 29 29 H 1.07996 * 119.79046 * 359.97438 * 6 5 4 30 30 H 1.07997 * 119.83414 * 180.02562 * 7 6 5 31 31 H 1.08005 * 120.04957 * 180.02562 * 8 7 6 32 32 H 0.96999 * 119.99740 * 180.02562 * 13 12 10 33 33 H 1.08002 * 120.16283 * 359.97438 * 18 5 4 34 34 H 1.09004 * 110.99040 * 272.29577 * 21 19 2 35 35 H 1.08995 * 110.99359 * 36.11723 * 21 19 2 36 36 H 1.09004 * 110.35099 * 204.11715 * 22 21 19 37 37 H 1.08993 * 110.45485 * 81.84749 * 22 21 19 38 38 H 1.00893 * 111.00105 * 146.36110 * 23 22 21 39 39 H 1.08998 * 109.88568 * 239.60303 * 24 23 22 40 40 H 1.09001 * 109.88758 * 118.41647 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1517 0.0061 -2.3994 6 6 1.8196 1.3579 -2.4610 7 6 1.9485 2.0583 -3.6487 8 6 2.4073 1.4259 -4.7824 9 6 2.7467 0.0608 -4.7354 10 6 3.2181 -0.5955 -5.8959 11 1 3.6974 -0.0282 -6.6801 12 6 3.0637 -1.9800 -6.0284 13 7 2.2000 -2.6163 -5.2796 14 14 4.0906 -2.9195 -7.2742 15 1 5.3526 -3.3714 -6.6352 16 1 3.3285 -4.0999 -7.7545 17 1 4.4073 -2.0336 -8.4233 18 6 2.6181 -0.6454 -3.5264 19 6 2.0400 -0.7213 1.2493 20 1 1.7484 -1.7714 1.2324 21 6 3.5801 -0.5815 1.3730 22 6 3.7812 -0.7337 2.9061 23 7 2.6198 -0.0468 3.5104 24 6 1.5203 -0.0312 2.5280 25 1 -0.3633 -1.0227 0.1012 26 1 -0.3633 0.5989 0.8351 27 1 -0.3633 0.4238 -0.9362 28 1 2.2490 -1.6318 -1.1525 29 1 1.4592 1.8626 -1.5769 30 1 1.6887 3.1059 -3.6855 31 1 2.5066 1.9765 -5.7062 32 1 2.0932 -3.5760 -5.3712 33 1 2.8801 -1.6921 -3.4787 34 1 4.0894 -1.3767 0.8283 35 1 3.9120 0.3986 1.0307 36 1 4.7095 -0.2537 3.2162 37 1 3.7874 -1.7869 3.1868 38 1 2.3349 -0.5017 4.3647 39 1 1.2367 0.9973 2.3052 40 1 0.6633 -0.5775 2.9220 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400391118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:18 Heat of formation + Delta-G solvation = -4.703538 kcal Electronic energy + Delta-G solvation = -19324.182042 eV Core-core repulsion = 16522.760594 eV Total energy + Delta-G solvation = -2801.421448 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.34848 -39.19416 -36.76920 -35.22754 -32.79847 -31.35599 -30.64100 -29.07966 -28.41370 -27.08191 -23.92794 -22.99572 -22.10674 -21.62297 -20.86883 -19.08485 -17.80566 -17.52731 -16.95196 -16.53259 -16.22751 -15.44297 -15.09335 -14.63020 -14.44701 -14.22987 -13.97554 -13.83181 -13.77041 -13.49635 -13.28430 -12.89685 -12.85920 -12.72336 -12.48253 -12.33984 -12.03962 -12.01448 -11.70549 -11.55338 -11.42628 -11.24337 -11.06647 -10.47382 -9.38022 -9.23550 -8.61741 -7.87527 -6.31545 1.09265 1.35015 1.38144 1.50921 1.58904 2.23163 2.76894 2.83473 3.30171 3.63500 3.71189 3.88345 3.99757 4.32285 4.34197 4.40626 4.45502 4.53892 4.59257 4.76033 4.79186 4.84551 4.93035 5.01610 5.03285 5.07985 5.11134 5.20842 5.26872 5.32934 5.40923 5.50022 5.62357 5.87635 5.98040 6.12643 6.22295 6.28952 6.50572 6.59879 6.95984 7.06698 7.08968 7.27551 8.39081 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025202 B = 0.004812 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.771356 B = 5817.519630 C = 6356.940423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.169 3.831 3 H 0.065 0.935 4 N -0.746 5.746 5 C 0.227 3.773 6 C -0.301 4.301 7 C -0.064 4.064 8 C -0.287 4.287 9 C 0.110 3.890 10 C -0.507 4.507 11 H 0.070 0.930 12 C 0.039 3.961 13 N -0.823 5.823 14 Si 0.979 3.021 15 H -0.263 1.263 16 H -0.268 1.268 17 H -0.260 1.260 18 C -0.259 4.259 19 C -0.108 4.108 20 H 0.081 0.919 21 C -0.122 4.122 22 C 0.049 3.951 23 N -0.693 5.693 24 C 0.060 3.940 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.389 0.611 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.284 0.716 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.349 0.651 39 H 0.073 0.927 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.583 -0.583 14.873 14.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.063 3.937 3 H 0.083 0.917 4 N -0.377 5.377 5 C 0.126 3.874 6 C -0.323 4.323 7 C -0.082 4.082 8 C -0.308 4.308 9 C 0.107 3.893 10 C -0.537 4.537 11 H 0.088 0.912 12 C -0.176 4.176 13 N -0.449 5.449 14 Si 0.800 3.200 15 H -0.188 1.188 16 H -0.192 1.192 17 H -0.184 1.184 18 C -0.284 4.284 19 C -0.128 4.128 20 H 0.100 0.900 21 C -0.161 4.161 22 C -0.080 4.080 23 N -0.324 5.324 24 C -0.070 4.070 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.057 0.943 28 H 0.223 0.777 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.166 0.834 39 H 0.091 0.909 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.545 0.004 14.935 14.945 hybrid contribution 0.093 -1.696 -0.961 1.951 sum -0.452 -1.693 13.974 14.084 Atomic orbital electron populations 1.22268 0.95869 1.02125 1.01790 1.20760 0.93495 0.95962 0.83495 0.91707 1.44568 1.74805 1.11521 1.06788 1.17695 0.92700 0.91292 0.85757 1.20232 1.20057 0.93490 0.98552 1.20651 0.96750 0.98305 0.92535 1.21009 1.15348 0.96358 0.98037 1.17701 0.87310 0.91694 0.92634 1.19804 1.36448 0.93450 1.03953 0.91185 1.26680 0.94244 0.98417 0.98227 1.69925 1.27377 1.10740 1.36865 0.85267 0.78732 0.77689 0.78359 1.18766 1.19215 1.18410 1.20623 1.15826 0.99926 0.92000 1.22583 0.95757 1.00081 0.94346 0.90028 1.22759 0.95298 1.01817 0.96192 1.22887 0.94840 0.97296 0.92927 1.61838 1.06290 1.57060 1.07187 1.22570 0.93477 1.00801 0.90104 0.92590 0.89941 0.94334 0.77730 0.87037 0.86578 0.89399 0.90511 0.88440 0.91318 0.92293 0.90249 0.92702 0.83409 0.90851 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.28 9.06 71.98 0.65 -3.63 16 2 C 0.17 4.82 1.67 44.99 0.08 4.90 16 3 H 0.06 2.03 6.42 -2.39 -0.02 2.01 16 4 N -0.75 -27.37 5.08 -319.11 -1.62 -28.99 16 5 C 0.23 10.54 6.63 38.16 0.25 10.79 16 6 C -0.30 -13.43 8.86 22.59 0.20 -13.23 16 7 C -0.06 -2.95 10.02 22.20 0.22 -2.73 16 8 C -0.29 -15.04 9.79 22.75 0.22 -14.82 16 9 C 0.11 6.23 5.56 -21.31 -0.12 6.12 16 10 C -0.51 -28.75 9.05 23.46 0.21 -28.53 16 11 H 0.07 3.87 7.91 -2.91 -0.02 3.85 16 12 C 0.04 2.04 5.13 85.25 0.44 2.48 16 13 N -0.82 -44.30 11.01 21.82 0.24 -44.06 16 14 Si 0.98 39.58 29.59 68.60 2.03 41.61 16 15 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 16 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 17 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 18 C -0.26 -14.02 8.53 22.86 0.19 -13.83 16 19 C -0.11 -2.42 2.56 -9.61 -0.02 -2.45 16 20 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 21 C -0.12 -2.89 6.40 32.15 0.21 -2.68 16 22 C 0.05 0.93 7.59 86.94 0.66 1.58 16 23 N -0.69 -12.71 7.39 -503.52 -3.72 -16.43 16 24 C 0.06 1.12 6.25 86.64 0.54 1.66 16 25 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.08 1.70 7.19 -2.39 -0.02 1.69 16 27 H 0.04 1.22 7.80 -2.39 -0.02 1.21 16 28 H 0.39 13.92 8.61 -92.71 -0.80 13.12 16 29 H 0.11 4.38 6.18 -2.91 -0.02 4.36 16 30 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 31 H 0.09 4.42 8.06 -2.91 -0.02 4.40 16 32 H 0.28 13.83 8.30 -92.71 -0.77 13.06 16 33 H 0.10 5.49 6.22 -2.91 -0.02 5.48 16 34 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.06 1.62 8.01 -2.39 -0.02 1.60 16 36 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.35 4.85 8.91 -89.70 -0.80 4.05 16 39 H 0.07 1.47 7.41 -2.39 -0.02 1.46 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -62.08 319.39 0.10 -61.98 By element: Atomic # 1 Polarization: 40.80 SS G_CDS: -0.56 Total: 40.25 kcal Atomic # 6 Polarization: -58.09 SS G_CDS: 3.73 Total: -54.36 kcal Atomic # 7 Polarization: -84.38 SS G_CDS: -5.10 Total: -89.48 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -62.08 0.10 -61.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400391118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.276 kcal (2) G-P(sol) polarization free energy of solvation -62.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds