Wall clock time and date at job start Mon Mar 30 2020 06:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08995 * 109.47541 * 2 1 4 4 N 1.46504 * 109.47315 * 120.00044 * 2 1 3 5 5 C 1.39682 * 119.99709 * 274.99896 * 4 2 1 6 6 C 1.39338 * 119.95576 * 359.97438 * 5 4 2 7 7 C 1.38476 * 120.42646 * 179.97438 * 6 5 4 8 8 C 1.37695 * 120.32490 * 359.97438 * 7 6 5 9 9 C 1.40741 * 119.89180 * 0.02562 * 8 7 6 10 10 C 1.41412 * 120.20840 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99900 * 25.28682 * 10 9 8 12 12 C 1.39929 * 120.00199 * 205.29576 * 10 9 8 13 13 N 1.30835 * 119.99650 * 17.22168 * 12 10 9 14 14 Si 1.86795 * 120.00179 * 197.22329 * 12 10 9 15 15 H 1.48498 * 109.46986 * 59.99685 * 14 12 10 16 16 H 1.48504 * 109.47262 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47046 * 300.00138 * 14 12 10 18 18 C 1.38287 * 119.95079 * 179.71987 * 5 4 2 19 19 C 1.53002 * 109.47140 * 239.99574 * 2 1 3 20 20 H 1.08998 * 110.29028 * 305.83554 * 19 2 1 21 21 C 1.54261 * 110.32288 * 183.70900 * 19 2 1 22 22 C 1.54388 * 105.05711 * 241.00133 * 21 19 2 23 23 N 1.48554 * 104.59643 * 336.14940 * 22 21 19 24 24 C 1.48565 * 104.22242 * 39.48379 * 23 22 21 25 25 H 1.08997 * 109.47536 * 182.18350 * 1 2 3 26 26 H 1.09010 * 109.46853 * 302.17873 * 1 2 3 27 27 H 1.09005 * 109.47162 * 62.17560 * 1 2 3 28 28 H 0.96999 * 119.99971 * 94.99478 * 4 2 1 29 29 H 1.07997 * 119.78329 * 0.02562 * 6 5 4 30 30 H 1.07994 * 119.83912 * 179.97438 * 7 6 5 31 31 H 1.08002 * 120.04951 * 180.02562 * 8 7 6 32 32 H 0.97003 * 119.99675 * 180.02562 * 13 12 10 33 33 H 1.08000 * 120.15940 * 0.02562 * 18 5 4 34 34 H 1.09001 * 110.32514 * 122.11109 * 21 19 2 35 35 H 1.08996 * 110.41562 * 359.93926 * 21 19 2 36 36 H 1.09004 * 110.40911 * 94.93119 * 22 21 19 37 37 H 1.08998 * 110.40828 * 217.37154 * 22 21 19 38 38 H 1.00895 * 111.00104 * 159.03605 * 23 22 21 39 39 H 1.08997 * 110.41317 * 201.74147 * 24 23 22 40 40 H 1.08997 * 110.41397 * 79.29117 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1517 0.0063 2.3994 6 6 1.8206 1.3583 2.4607 7 6 1.9486 2.0585 3.6485 8 6 2.4045 1.4253 4.7831 9 6 2.7429 0.0600 4.7365 10 6 3.2112 -0.5970 5.8978 11 1 2.9425 -0.2237 6.8749 12 6 4.0231 -1.7307 5.7809 13 7 4.6240 -1.9910 4.6483 14 14 4.2488 -2.8725 7.2420 15 1 2.9298 -3.4166 7.6534 16 1 5.1485 -3.9911 6.8617 17 1 4.8472 -2.1176 8.3722 18 6 2.6073 -0.6480 3.5293 19 6 2.0399 -0.7214 -1.2492 20 1 1.6016 -1.7171 -1.3161 21 6 3.5795 -0.8144 -1.2231 22 6 4.0491 -0.0449 -2.4765 23 7 2.8872 -0.0907 -3.4011 24 6 1.7088 0.0966 -2.5160 25 1 -0.3634 -1.0269 0.0392 26 1 -0.3633 0.5474 0.8699 27 1 -0.3634 0.4797 -0.9089 28 1 2.2489 -1.6318 1.1526 29 1 1.4609 1.8632 1.5763 30 1 1.6896 3.1063 3.6852 31 1 2.5022 1.9756 5.7073 32 1 5.1865 -2.7772 4.5672 33 1 2.8608 -1.6968 3.4839 34 1 3.8969 -1.8557 -1.2773 35 1 3.9735 -0.3456 -0.3215 36 1 4.2910 0.9868 -2.2208 37 1 4.9113 -0.5385 -2.9248 38 1 2.9433 0.6453 -4.0890 39 1 0.8090 -0.2906 -2.9939 40 1 1.5844 1.1503 -2.2664 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400391126.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:23 Heat of formation + Delta-G solvation = 14.070111 kcal Electronic energy + Delta-G solvation = -19413.921754 eV Core-core repulsion = 16613.314392 eV Total energy + Delta-G solvation = -2800.607362 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.17663 -37.56071 -35.26129 -33.38476 -31.31603 -29.69970 -29.37926 -27.85779 -26.94826 -25.14535 -22.59259 -21.47650 -21.05536 -19.95865 -19.38342 -17.19783 -16.66955 -15.85972 -15.54372 -14.88181 -14.63507 -14.36988 -13.68358 -13.35517 -13.08611 -12.71790 -12.55576 -12.32106 -12.18083 -12.16050 -11.73412 -11.62852 -11.24143 -11.13719 -11.04982 -10.96700 -10.78300 -10.46840 -10.41435 -10.16702 -9.59083 -9.40477 -9.21587 -8.78350 -8.67911 -7.27874 -6.70208 -6.12710 -4.28935 2.90712 3.10474 3.13983 3.25424 3.36656 3.99839 4.15450 4.24477 4.74361 4.77425 4.88616 4.94498 5.24269 5.40225 5.54209 5.60793 5.62915 5.68827 5.86159 5.93407 5.95167 5.98009 6.15957 6.26065 6.30766 6.33845 6.49551 6.62667 6.71642 6.91439 7.13770 7.16605 7.17713 7.40772 7.47457 7.84555 7.98613 8.13860 8.20077 8.52388 8.74972 8.87128 9.03972 9.14948 10.28903 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024576 B = 0.005039 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.029446 B = 5555.059454 C = 6177.961684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.165 3.835 3 H 0.071 0.929 4 N -0.753 5.753 5 C 0.219 3.781 6 C -0.300 4.300 7 C -0.067 4.067 8 C -0.258 4.258 9 C 0.140 3.860 10 C -0.467 4.467 11 H 0.075 0.925 12 C 0.079 3.921 13 N -0.794 5.794 14 Si 0.904 3.096 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.266 1.266 18 C -0.231 4.231 19 C -0.097 4.097 20 H 0.078 0.922 21 C -0.121 4.121 22 C 0.034 3.966 23 N -0.669 5.669 24 C 0.044 3.956 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.389 0.611 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.277 0.723 33 H 0.115 0.885 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.333 0.667 39 H 0.079 0.921 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.027 1.141 -11.687 12.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.058 3.942 3 H 0.089 0.911 4 N -0.385 5.385 5 C 0.120 3.880 6 C -0.323 4.323 7 C -0.086 4.086 8 C -0.279 4.279 9 C 0.137 3.863 10 C -0.497 4.497 11 H 0.093 0.907 12 C -0.138 4.138 13 N -0.420 5.420 14 Si 0.729 3.271 15 H -0.189 1.189 16 H -0.205 1.205 17 H -0.191 1.191 18 C -0.255 4.255 19 C -0.117 4.117 20 H 0.097 0.903 21 C -0.159 4.159 22 C -0.095 4.095 23 N -0.297 5.297 24 C -0.086 4.086 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.222 0.778 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.133 0.867 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.148 0.852 39 H 0.097 0.903 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.953 0.383 -11.997 12.361 hybrid contribution 0.338 0.113 0.843 0.915 sum -2.614 0.495 -11.154 11.467 Atomic orbital electron populations 1.22320 0.96947 1.01865 1.01449 1.20684 0.92810 0.96379 0.84312 0.91102 1.44467 1.75560 1.11556 1.06947 1.17624 0.94240 0.90962 0.85148 1.19897 1.20874 0.93840 0.97659 1.20283 0.98261 0.96768 0.93254 1.20861 1.14619 0.95301 0.97095 1.17309 0.86664 0.90006 0.92311 1.19518 1.27109 1.09097 0.93961 0.90691 1.25853 0.93729 0.97451 0.96814 1.69857 1.21524 1.24508 1.26072 0.86450 0.78989 0.79680 0.82025 1.18949 1.20488 1.19115 1.20709 1.12611 0.99978 0.92169 1.22151 0.96125 0.99747 0.93681 0.90329 1.22360 0.94760 1.00989 0.97772 1.22944 0.94246 0.99029 0.93293 1.63721 1.02446 1.50048 1.13498 1.22921 0.94422 0.98357 0.92872 0.92845 0.91938 0.92977 0.77803 0.89653 0.89775 0.89484 0.91186 0.86675 0.91342 0.89911 0.94191 0.90426 0.85236 0.90251 0.93875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 9.31 37.15 0.35 -1.97 16 2 C 0.17 2.48 1.61 -67.93 -0.11 2.37 16 3 H 0.07 1.16 6.35 -51.93 -0.33 0.83 16 4 N -0.75 -13.89 4.45 -52.22 -0.23 -14.12 16 5 C 0.22 5.01 6.63 -83.85 -0.56 4.45 16 6 C -0.30 -6.74 8.87 -39.08 -0.35 -7.09 16 7 C -0.07 -1.55 10.02 -39.69 -0.40 -1.94 16 8 C -0.26 -6.56 9.79 -38.83 -0.38 -6.94 16 9 C 0.14 3.82 5.56 -106.85 -0.59 3.23 16 10 C -0.47 -12.68 9.05 -37.74 -0.34 -13.02 16 11 H 0.07 1.96 7.90 -52.49 -0.41 1.55 16 12 C 0.08 2.01 5.14 -17.34 -0.09 1.92 16 13 N -0.79 -20.76 10.99 55.55 0.61 -20.15 16 14 Si 0.90 19.01 29.59 -169.99 -5.03 13.98 16 15 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 16 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 18 C -0.23 -6.00 8.52 -38.67 -0.33 -6.33 16 19 C -0.10 -1.25 2.67 -89.23 -0.24 -1.49 16 20 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 21 C -0.12 -1.62 6.32 -25.34 -0.16 -1.78 16 22 C 0.03 0.40 7.47 -2.18 -0.02 0.38 16 23 N -0.67 -7.40 7.62 -109.66 -0.84 -8.24 16 24 C 0.04 0.49 6.18 -2.18 -0.01 0.48 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.98 7.67 -51.92 -0.40 0.59 16 27 H 0.05 0.60 7.47 -51.93 -0.39 0.21 16 28 H 0.39 6.99 8.58 -40.82 -0.35 6.64 16 29 H 0.09 1.73 6.04 -52.49 -0.32 1.42 16 30 H 0.08 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 32 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 33 H 0.12 3.10 6.22 -52.49 -0.33 2.77 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.31 7.31 -51.93 -0.38 0.93 16 36 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.33 3.03 8.92 -39.29 -0.35 2.68 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.04 0.47 7.78 -51.93 -0.40 0.06 16 LS Contribution 318.61 15.07 4.80 4.80 Total: -1.00 -27.80 318.61 -10.09 -37.89 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -6.17 Total: 13.57 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -3.23 Total: -27.73 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: -0.46 Total: -42.51 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.80 -10.09 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400391126.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.956 kcal (2) G-P(sol) polarization free energy of solvation -27.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds