Wall clock time and date at job start Mon Mar 30 2020 06:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08995 * 109.47541 * 2 1 4 4 N 1.46504 * 109.47315 * 120.00044 * 2 1 3 5 5 C 1.39682 * 119.99709 * 274.99896 * 4 2 1 6 6 C 1.39338 * 119.95576 * 359.97438 * 5 4 2 7 7 C 1.38476 * 120.42646 * 179.97438 * 6 5 4 8 8 C 1.37695 * 120.32490 * 359.97438 * 7 6 5 9 9 C 1.40741 * 119.89180 * 0.02562 * 8 7 6 10 10 C 1.41412 * 120.20840 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99900 * 25.28682 * 10 9 8 12 12 C 1.39929 * 120.00199 * 205.29576 * 10 9 8 13 13 N 1.30835 * 119.99650 * 17.22168 * 12 10 9 14 14 Si 1.86795 * 120.00179 * 197.22329 * 12 10 9 15 15 H 1.48498 * 109.46986 * 59.99685 * 14 12 10 16 16 H 1.48504 * 109.47262 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47046 * 300.00138 * 14 12 10 18 18 C 1.38287 * 119.95079 * 179.71987 * 5 4 2 19 19 C 1.53002 * 109.47140 * 239.99574 * 2 1 3 20 20 H 1.08998 * 110.29028 * 305.83554 * 19 2 1 21 21 C 1.54261 * 110.32288 * 183.70900 * 19 2 1 22 22 C 1.54388 * 105.05711 * 241.00133 * 21 19 2 23 23 N 1.48554 * 104.59643 * 336.14940 * 22 21 19 24 24 C 1.48565 * 104.22242 * 39.48379 * 23 22 21 25 25 H 1.08997 * 109.47536 * 182.18350 * 1 2 3 26 26 H 1.09010 * 109.46853 * 302.17873 * 1 2 3 27 27 H 1.09005 * 109.47162 * 62.17560 * 1 2 3 28 28 H 0.96999 * 119.99971 * 94.99478 * 4 2 1 29 29 H 1.07997 * 119.78329 * 0.02562 * 6 5 4 30 30 H 1.07994 * 119.83912 * 179.97438 * 7 6 5 31 31 H 1.08002 * 120.04951 * 180.02562 * 8 7 6 32 32 H 0.97003 * 119.99675 * 180.02562 * 13 12 10 33 33 H 1.08000 * 120.15940 * 0.02562 * 18 5 4 34 34 H 1.09001 * 110.32514 * 122.11109 * 21 19 2 35 35 H 1.08996 * 110.41562 * 359.93926 * 21 19 2 36 36 H 1.09004 * 110.40911 * 94.93119 * 22 21 19 37 37 H 1.08998 * 110.40828 * 217.37154 * 22 21 19 38 38 H 1.00895 * 111.00104 * 159.03605 * 23 22 21 39 39 H 1.08997 * 110.41317 * 201.74147 * 24 23 22 40 40 H 1.08997 * 110.41397 * 79.29117 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1517 0.0063 2.3994 6 6 1.8206 1.3583 2.4607 7 6 1.9486 2.0585 3.6485 8 6 2.4045 1.4253 4.7831 9 6 2.7429 0.0600 4.7365 10 6 3.2112 -0.5970 5.8978 11 1 2.9425 -0.2237 6.8749 12 6 4.0231 -1.7307 5.7809 13 7 4.6240 -1.9910 4.6483 14 14 4.2488 -2.8725 7.2420 15 1 2.9298 -3.4166 7.6534 16 1 5.1485 -3.9911 6.8617 17 1 4.8472 -2.1176 8.3722 18 6 2.6073 -0.6480 3.5293 19 6 2.0399 -0.7214 -1.2492 20 1 1.6016 -1.7171 -1.3161 21 6 3.5795 -0.8144 -1.2231 22 6 4.0491 -0.0449 -2.4765 23 7 2.8872 -0.0907 -3.4011 24 6 1.7088 0.0966 -2.5160 25 1 -0.3634 -1.0269 0.0392 26 1 -0.3633 0.5474 0.8699 27 1 -0.3634 0.4797 -0.9089 28 1 2.2489 -1.6318 1.1526 29 1 1.4609 1.8632 1.5763 30 1 1.6896 3.1063 3.6852 31 1 2.5022 1.9756 5.7073 32 1 5.1865 -2.7772 4.5672 33 1 2.8608 -1.6968 3.4839 34 1 3.8969 -1.8557 -1.2773 35 1 3.9735 -0.3456 -0.3215 36 1 4.2910 0.9868 -2.2208 37 1 4.9113 -0.5385 -2.9248 38 1 2.9433 0.6453 -4.0890 39 1 0.8090 -0.2906 -2.9939 40 1 1.5844 1.1503 -2.2664 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400391126.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:23 Heat of formation + Delta-G solvation = -2.884522 kcal Electronic energy + Delta-G solvation = -19414.656962 eV Core-core repulsion = 16613.314392 eV Total energy + Delta-G solvation = -2801.342570 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.40006 -39.17773 -36.74075 -35.22133 -32.78255 -31.35930 -30.65292 -29.09335 -28.42637 -27.08194 -23.85510 -23.00416 -22.31344 -21.62348 -20.68124 -19.05330 -17.89672 -17.17475 -17.00719 -16.48928 -16.25288 -15.87431 -15.00508 -14.68199 -14.45416 -14.30295 -14.08264 -13.91319 -13.50962 -13.27382 -13.12822 -12.90038 -12.84628 -12.73750 -12.54356 -12.28331 -12.10853 -12.04676 -11.80435 -11.49829 -11.32775 -11.22918 -11.04830 -10.48678 -9.57755 -9.23373 -8.61113 -7.87305 -6.31611 1.10342 1.34918 1.38196 1.49244 1.59784 2.23225 2.76345 2.84192 3.29463 3.74109 3.81019 3.89143 3.90337 4.25181 4.34996 4.42677 4.50165 4.53801 4.65812 4.75255 4.77908 4.87186 4.92896 4.97467 5.02116 5.08772 5.17240 5.20329 5.22073 5.32706 5.40198 5.48861 5.62612 5.74087 5.97820 6.12219 6.22363 6.28882 6.41007 6.60055 6.96075 7.06936 7.08865 7.27261 8.39415 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024576 B = 0.005039 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.029446 B = 5555.059454 C = 6177.961684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.165 3.835 3 H 0.062 0.938 4 N -0.746 5.746 5 C 0.227 3.773 6 C -0.300 4.300 7 C -0.064 4.064 8 C -0.287 4.287 9 C 0.110 3.890 10 C -0.507 4.507 11 H 0.070 0.930 12 C 0.039 3.961 13 N -0.823 5.823 14 Si 0.978 3.022 15 H -0.262 1.262 16 H -0.267 1.267 17 H -0.261 1.261 18 C -0.260 4.260 19 C -0.091 4.091 20 H 0.082 0.918 21 C -0.123 4.123 22 C 0.038 3.962 23 N -0.671 5.671 24 C 0.048 3.952 25 H 0.055 0.945 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.390 0.610 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.284 0.716 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.347 0.653 39 H 0.095 0.905 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.709 1.209 -13.401 13.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.059 3.941 3 H 0.080 0.920 4 N -0.376 5.376 5 C 0.126 3.874 6 C -0.323 4.323 7 C -0.082 4.082 8 C -0.308 4.308 9 C 0.107 3.893 10 C -0.537 4.537 11 H 0.088 0.912 12 C -0.176 4.176 13 N -0.449 5.449 14 Si 0.799 3.201 15 H -0.187 1.187 16 H -0.192 1.192 17 H -0.185 1.185 18 C -0.284 4.284 19 C -0.110 4.110 20 H 0.100 0.900 21 C -0.161 4.161 22 C -0.091 4.091 23 N -0.301 5.301 24 C -0.081 4.081 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.223 0.777 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.163 0.837 39 H 0.114 0.886 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.648 0.464 -13.764 14.247 hybrid contribution 0.527 0.153 1.233 1.349 sum -3.121 0.617 -12.531 12.928 Atomic orbital electron populations 1.22248 0.95473 1.02104 1.02104 1.20871 0.93776 0.95775 0.83658 0.91954 1.44582 1.74697 1.11613 1.06746 1.17702 0.92512 0.91422 0.85794 1.20220 1.20025 0.93623 0.98443 1.20646 0.96700 0.98320 0.92570 1.21013 1.16447 0.95061 0.98260 1.17697 0.87395 0.91136 0.93073 1.19778 1.28917 1.11091 0.93931 0.91152 1.26676 0.92746 0.98306 0.99863 1.69919 1.21851 1.25146 1.28006 0.85328 0.79068 0.77521 0.78201 1.18672 1.19161 1.18493 1.20638 1.14973 0.99431 0.93338 1.22082 0.95451 1.00024 0.93489 0.90005 1.22312 0.95386 1.00878 0.97524 1.22889 0.94835 0.98814 0.92610 1.63706 1.01967 1.50919 1.13477 1.22920 0.95002 0.98379 0.91824 0.92633 0.93897 0.89876 0.77692 0.86988 0.86562 0.89401 0.90514 0.88464 0.91546 0.92762 0.94101 0.89681 0.83664 0.88631 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 9.31 71.98 0.67 -3.38 16 2 C 0.16 4.66 1.61 44.99 0.07 4.73 16 3 H 0.06 1.90 6.35 -2.39 -0.02 1.89 16 4 N -0.75 -27.33 4.45 -319.12 -1.42 -28.75 16 5 C 0.23 10.47 6.63 38.17 0.25 10.73 16 6 C -0.30 -13.23 8.87 22.59 0.20 -13.03 16 7 C -0.06 -2.91 10.02 22.20 0.22 -2.69 16 8 C -0.29 -14.96 9.79 22.75 0.22 -14.74 16 9 C 0.11 6.24 5.56 -21.31 -0.12 6.12 16 10 C -0.51 -28.73 9.05 23.46 0.21 -28.52 16 11 H 0.07 3.87 7.90 -2.91 -0.02 3.85 16 12 C 0.04 2.03 5.14 85.25 0.44 2.47 16 13 N -0.82 -44.36 10.99 21.82 0.24 -44.12 16 14 Si 0.98 39.63 29.59 68.60 2.03 41.66 16 15 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 16 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 17 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 18 C -0.26 -14.00 8.52 22.86 0.19 -13.80 16 19 C -0.09 -2.14 2.67 -9.90 -0.03 -2.17 16 20 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 21 C -0.12 -3.18 6.32 31.49 0.20 -2.98 16 22 C 0.04 0.82 7.47 86.45 0.65 1.46 16 23 N -0.67 -12.87 7.62 -500.84 -3.82 -16.69 16 24 C 0.05 0.91 6.18 86.45 0.53 1.45 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.26 7.67 -2.38 -0.02 1.24 16 27 H 0.08 1.59 7.47 -2.38 -0.02 1.58 16 28 H 0.39 14.13 8.58 -92.71 -0.80 13.34 16 29 H 0.11 4.29 6.04 -2.91 -0.02 4.27 16 30 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 31 H 0.09 4.39 8.06 -2.91 -0.02 4.37 16 32 H 0.28 13.91 8.30 -92.71 -0.77 13.14 16 33 H 0.10 5.49 6.22 -2.91 -0.02 5.47 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.05 1.71 7.31 -2.39 -0.02 1.70 16 36 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.35 5.19 8.92 -89.70 -0.80 4.39 16 39 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 0.89 7.78 -2.39 -0.02 0.88 16 Total: -1.00 -61.59 318.61 0.20 -61.39 By element: Atomic # 1 Polarization: 41.41 SS G_CDS: -0.55 Total: 40.86 kcal Atomic # 6 Polarization: -58.07 SS G_CDS: 3.72 Total: -54.35 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -5.00 Total: -89.56 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -61.59 0.20 -61.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400391126.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.509 kcal (2) G-P(sol) polarization free energy of solvation -61.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds