Wall clock time and date at job start Mon Mar 30 2020 06:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46854 * 2 1 4 4 N 1.46496 * 109.47447 * 239.99374 * 2 1 3 5 5 C 1.39685 * 119.99830 * 85.00135 * 4 2 1 6 6 C 1.39332 * 119.95289 * 0.02562 * 5 4 2 7 7 C 1.38473 * 120.42512 * 179.97438 * 6 5 4 8 8 C 1.37690 * 120.32753 * 359.97438 * 7 6 5 9 9 C 1.40751 * 119.89097 * 0.02612 * 8 7 6 10 10 C 1.41405 * 120.20950 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00302 * 155.05152 * 10 9 8 12 12 C 1.39928 * 119.99622 * 334.77298 * 10 9 8 13 13 N 1.30827 * 120.00495 * 342.35065 * 12 10 9 14 14 Si 1.86800 * 119.99653 * 162.34585 * 12 10 9 15 15 H 1.48493 * 109.47311 * 94.52257 * 14 12 10 16 16 H 1.48507 * 109.47205 * 214.52173 * 14 12 10 17 17 H 1.48504 * 109.47429 * 334.52053 * 14 12 10 18 18 C 1.38283 * 119.94990 * 180.28500 * 5 4 2 19 19 C 1.53006 * 109.46797 * 119.99345 * 2 1 3 20 20 H 1.09003 * 110.27201 * 59.36407 * 19 2 1 21 21 C 1.54597 * 110.31098 * 297.17096 * 19 2 1 22 22 C 1.54931 * 102.91975 * 219.12721 * 21 19 2 23 23 N 1.48527 * 103.23128 * 37.41499 * 22 21 19 24 24 C 1.47908 * 105.81911 * 320.78995 * 23 22 21 25 25 H 1.08993 * 109.46984 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47012 * 300.00803 * 1 2 3 27 27 H 1.09001 * 109.46291 * 60.00313 * 1 2 3 28 28 H 0.97000 * 120.00130 * 265.00408 * 4 2 1 29 29 H 1.08002 * 119.79007 * 0.02562 * 6 5 4 30 30 H 1.08007 * 119.83802 * 180.02562 * 7 6 5 31 31 H 1.07999 * 120.05850 * 179.97438 * 8 7 6 32 32 H 0.96997 * 120.00532 * 180.02562 * 13 12 10 33 33 H 1.07998 * 120.16259 * 0.02562 * 18 5 4 34 34 H 1.09004 * 110.72384 * 337.48709 * 21 19 2 35 35 H 1.09000 * 110.72192 * 100.76511 * 21 19 2 36 36 H 1.09000 * 110.66709 * 278.97240 * 22 21 19 37 37 H 1.09003 * 110.81016 * 155.91629 * 22 21 19 38 38 H 1.00896 * 111.00383 * 200.28099 * 23 22 21 39 39 H 1.08994 * 109.91954 * 265.97986 * 24 23 22 40 40 H 1.08999 * 110.08223 * 144.77195 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0185 -0.6907 -1.1960 5 6 2.1519 0.0060 -2.3993 6 6 1.8207 1.3580 -2.4608 7 6 1.9498 2.0584 -3.6484 8 6 2.4077 1.4257 -4.7824 9 6 2.7461 0.0603 -4.7356 10 6 3.2176 -0.5960 -5.8960 11 1 3.8394 -1.4743 -5.8047 12 6 2.8736 -0.1109 -7.1626 13 7 1.8645 0.7109 -7.2966 14 14 3.8555 -0.6366 -8.6623 15 1 3.1918 -1.7985 -9.3061 16 1 3.9266 0.4901 -9.6272 17 1 5.2287 -1.0190 -8.2459 18 6 2.6074 -0.6484 -3.5291 19 6 2.0400 -0.7211 1.2494 20 1 1.6746 -1.7479 1.2684 21 6 1.5946 0.0327 2.5235 22 6 2.8354 -0.0804 3.4445 23 7 3.9735 0.0502 2.4991 24 6 3.5793 -0.7008 1.2874 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 2.2491 -1.6319 -1.1524 29 1 1.4619 1.8633 -1.5763 30 1 1.6907 3.1063 -3.6852 31 1 2.5063 1.9760 -5.7064 32 1 1.6258 1.0469 -8.1746 33 1 2.8600 -1.6974 -3.4838 34 1 1.3758 1.0764 2.2975 35 1 0.7314 -0.4538 2.9776 36 1 2.8579 -1.0498 3.9422 37 1 2.8490 0.7269 4.1767 38 1 4.8202 -0.3263 2.8983 39 1 3.9629 -1.7197 1.3408 40 1 3.9662 -0.2048 0.3972 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400391134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:27 Heat of formation + Delta-G solvation = 14.436852 kcal Electronic energy + Delta-G solvation = -19188.762118 eV Core-core repulsion = 16388.170660 eV Total energy + Delta-G solvation = -2800.591459 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.21957 -37.55929 -35.32418 -33.33710 -31.35195 -29.70652 -29.22894 -28.24927 -26.82035 -25.11837 -22.48930 -21.54032 -20.96628 -20.16685 -19.40755 -17.33593 -16.74321 -15.89753 -15.46193 -14.83541 -14.60397 -14.27022 -13.71143 -13.58038 -12.90233 -12.80202 -12.54591 -12.51202 -12.16183 -12.05890 -11.76556 -11.50348 -11.43094 -11.26314 -11.06623 -10.94387 -10.81958 -10.54201 -10.43394 -10.21718 -9.68954 -9.27423 -9.15203 -8.67866 -8.60213 -7.32409 -6.66360 -6.14375 -4.26003 2.89568 3.12442 3.17576 3.27392 3.42281 4.00345 4.14936 4.20668 4.62305 4.70684 4.77407 4.86484 5.13975 5.36647 5.46394 5.50842 5.62678 5.66994 5.80764 5.86215 5.92922 5.93338 6.07764 6.19329 6.29028 6.40088 6.52882 6.64884 6.72062 7.09324 7.13813 7.16834 7.20314 7.39777 7.45997 7.85201 7.97301 8.19943 8.30846 8.57043 8.70226 8.84673 9.05202 9.17866 10.29975 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038232 B = 0.004107 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.193904 B = 6815.656365 C = 7108.499617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.168 3.832 3 H 0.078 0.922 4 N -0.757 5.757 5 C 0.227 3.773 6 C -0.300 4.300 7 C -0.075 4.075 8 C -0.199 4.199 9 C 0.142 3.858 10 C -0.466 4.466 11 H 0.074 0.926 12 C 0.078 3.922 13 N -0.793 5.793 14 Si 0.904 3.096 15 H -0.272 1.272 16 H -0.276 1.276 17 H -0.261 1.261 18 C -0.290 4.290 19 C -0.104 4.104 20 H 0.073 0.927 21 C -0.114 4.114 22 C 0.036 3.964 23 N -0.672 5.672 24 C 0.044 3.956 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.385 0.615 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.278 0.722 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.037 0.963 37 H 0.079 0.921 38 H 0.334 0.666 39 H 0.036 0.964 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 -2.179 14.917 15.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.096 0.904 4 N -0.389 5.389 5 C 0.129 3.871 6 C -0.323 4.323 7 C -0.094 4.094 8 C -0.220 4.220 9 C 0.139 3.861 10 C -0.496 4.496 11 H 0.093 0.907 12 C -0.139 4.139 13 N -0.419 5.419 14 Si 0.728 3.272 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.185 1.185 18 C -0.314 4.314 19 C -0.124 4.124 20 H 0.092 0.908 21 C -0.153 4.153 22 C -0.093 4.093 23 N -0.301 5.301 24 C -0.085 4.085 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.218 0.782 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.130 0.870 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.149 0.851 39 H 0.054 0.946 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.435 -1.227 14.579 14.637 hybrid contribution 0.432 -1.617 -0.452 1.734 sum -0.004 -2.844 14.127 14.410 Atomic orbital electron populations 1.22315 0.96938 1.01594 1.01784 1.20674 0.92766 0.96768 0.83644 0.90358 1.44500 1.75858 1.11321 1.07256 1.17443 0.94113 0.91041 0.84517 1.19886 1.21010 0.93554 0.97821 1.20441 0.98711 0.97049 0.93238 1.21143 1.08589 0.95059 0.97187 1.17324 0.86602 0.91107 0.91073 1.19531 1.28440 1.11610 0.90059 0.90741 1.25869 0.93678 0.93631 1.00732 1.69862 1.20985 1.25525 1.25488 0.86385 0.81238 0.78910 0.80634 1.19734 1.20120 1.18511 1.20403 1.19215 0.98013 0.93731 1.22286 0.95056 0.99740 0.95335 0.90847 1.22508 0.96894 1.01470 0.94406 1.23044 0.91235 0.99789 0.95265 1.63073 1.04978 1.56393 1.05673 1.22748 0.94877 0.96164 0.94757 0.93134 0.92819 0.91763 0.78236 0.89561 0.89760 0.86957 0.91117 0.89466 0.90318 0.91113 0.94470 0.90252 0.85053 0.94561 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 9.23 37.16 0.34 -1.99 16 2 C 0.17 2.48 1.51 -67.93 -0.10 2.37 16 3 H 0.08 1.30 6.46 -51.93 -0.34 0.97 16 4 N -0.76 -13.35 4.67 -52.21 -0.24 -13.59 16 5 C 0.23 5.11 6.63 -83.86 -0.56 4.55 16 6 C -0.30 -6.89 8.86 -39.09 -0.35 -7.23 16 7 C -0.08 -1.84 10.01 -39.69 -0.40 -2.24 16 8 C -0.20 -5.38 8.69 -38.83 -0.34 -5.72 16 9 C 0.14 3.91 5.56 -106.85 -0.59 3.31 16 10 C -0.47 -12.77 9.05 -37.74 -0.34 -13.11 16 11 H 0.07 1.96 7.91 -52.49 -0.42 1.55 16 12 C 0.08 2.03 5.14 -17.35 -0.09 1.94 16 13 N -0.79 -21.13 10.99 55.55 0.61 -20.52 16 14 Si 0.90 19.12 29.59 -169.99 -5.03 14.09 16 15 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 18 C -0.29 -7.28 9.63 -38.67 -0.37 -7.65 16 19 C -0.10 -1.24 2.63 -89.26 -0.23 -1.48 16 20 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 21 C -0.11 -1.16 5.60 -24.87 -0.14 -1.30 16 22 C 0.04 0.34 7.55 -1.90 -0.01 0.33 16 23 N -0.67 -7.63 7.51 -110.09 -0.83 -8.46 16 24 C 0.04 0.54 6.95 -2.75 -0.02 0.52 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.62 7.26 -51.93 -0.38 0.25 16 27 H 0.06 1.05 7.70 -51.93 -0.40 0.65 16 28 H 0.38 6.28 8.61 -40.82 -0.35 5.92 16 29 H 0.09 1.81 6.08 -52.49 -0.32 1.49 16 30 H 0.08 1.86 8.06 -52.48 -0.42 1.44 16 31 H 0.11 3.13 6.20 -52.49 -0.33 2.81 16 32 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 33 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 34 H 0.08 0.85 7.73 -51.93 -0.40 0.45 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.33 3.19 8.92 -39.29 -0.35 2.84 16 39 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 1.38 7.41 -51.93 -0.38 0.99 16 LS Contribution 318.64 15.07 4.80 4.80 Total: -1.00 -28.54 318.64 -10.07 -38.60 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -6.18 Total: 12.77 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: -3.20 Total: -27.69 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -0.46 Total: -42.57 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.54 -10.07 -38.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400391134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.040 kcal (2) G-P(sol) polarization free energy of solvation -28.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds