Wall clock time and date at job start Mon Mar 30 2020 06:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46854 * 2 1 4 4 N 1.46496 * 109.47447 * 239.99374 * 2 1 3 5 5 C 1.39685 * 119.99830 * 85.00135 * 4 2 1 6 6 C 1.39332 * 119.95289 * 0.02562 * 5 4 2 7 7 C 1.38473 * 120.42512 * 179.97438 * 6 5 4 8 8 C 1.37690 * 120.32753 * 359.97438 * 7 6 5 9 9 C 1.40751 * 119.89097 * 0.02612 * 8 7 6 10 10 C 1.41405 * 120.20950 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00302 * 155.05152 * 10 9 8 12 12 C 1.39928 * 119.99622 * 334.77298 * 10 9 8 13 13 N 1.30827 * 120.00495 * 342.35065 * 12 10 9 14 14 Si 1.86800 * 119.99653 * 162.34585 * 12 10 9 15 15 H 1.48493 * 109.47311 * 94.52257 * 14 12 10 16 16 H 1.48507 * 109.47205 * 214.52173 * 14 12 10 17 17 H 1.48504 * 109.47429 * 334.52053 * 14 12 10 18 18 C 1.38283 * 119.94990 * 180.28500 * 5 4 2 19 19 C 1.53006 * 109.46797 * 119.99345 * 2 1 3 20 20 H 1.09003 * 110.27201 * 59.36407 * 19 2 1 21 21 C 1.54597 * 110.31098 * 297.17096 * 19 2 1 22 22 C 1.54931 * 102.91975 * 219.12721 * 21 19 2 23 23 N 1.48527 * 103.23128 * 37.41499 * 22 21 19 24 24 C 1.47908 * 105.81911 * 320.78995 * 23 22 21 25 25 H 1.08993 * 109.46984 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47012 * 300.00803 * 1 2 3 27 27 H 1.09001 * 109.46291 * 60.00313 * 1 2 3 28 28 H 0.97000 * 120.00130 * 265.00408 * 4 2 1 29 29 H 1.08002 * 119.79007 * 0.02562 * 6 5 4 30 30 H 1.08007 * 119.83802 * 180.02562 * 7 6 5 31 31 H 1.07999 * 120.05850 * 179.97438 * 8 7 6 32 32 H 0.96997 * 120.00532 * 180.02562 * 13 12 10 33 33 H 1.07998 * 120.16259 * 0.02562 * 18 5 4 34 34 H 1.09004 * 110.72384 * 337.48709 * 21 19 2 35 35 H 1.09000 * 110.72192 * 100.76511 * 21 19 2 36 36 H 1.09000 * 110.66709 * 278.97240 * 22 21 19 37 37 H 1.09003 * 110.81016 * 155.91629 * 22 21 19 38 38 H 1.00896 * 111.00383 * 200.28099 * 23 22 21 39 39 H 1.08994 * 109.91954 * 265.97986 * 24 23 22 40 40 H 1.08999 * 110.08223 * 144.77195 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0185 -0.6907 -1.1960 5 6 2.1519 0.0060 -2.3993 6 6 1.8207 1.3580 -2.4608 7 6 1.9498 2.0584 -3.6484 8 6 2.4077 1.4257 -4.7824 9 6 2.7461 0.0603 -4.7356 10 6 3.2176 -0.5960 -5.8960 11 1 3.8394 -1.4743 -5.8047 12 6 2.8736 -0.1109 -7.1626 13 7 1.8645 0.7109 -7.2966 14 14 3.8555 -0.6366 -8.6623 15 1 3.1918 -1.7985 -9.3061 16 1 3.9266 0.4901 -9.6272 17 1 5.2287 -1.0190 -8.2459 18 6 2.6074 -0.6484 -3.5291 19 6 2.0400 -0.7211 1.2494 20 1 1.6746 -1.7479 1.2684 21 6 1.5946 0.0327 2.5235 22 6 2.8354 -0.0804 3.4445 23 7 3.9735 0.0502 2.4991 24 6 3.5793 -0.7008 1.2874 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 2.2491 -1.6319 -1.1524 29 1 1.4619 1.8633 -1.5763 30 1 1.6907 3.1063 -3.6852 31 1 2.5063 1.9760 -5.7064 32 1 1.6258 1.0469 -8.1746 33 1 2.8600 -1.6974 -3.4838 34 1 1.3758 1.0764 2.2975 35 1 0.7314 -0.4538 2.9776 36 1 2.8579 -1.0498 3.9422 37 1 2.8490 0.7269 4.1767 38 1 4.8202 -0.3263 2.8983 39 1 3.9629 -1.7197 1.3408 40 1 3.9662 -0.2048 0.3972 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400391134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:27 Heat of formation + Delta-G solvation = -3.397329 kcal Electronic energy + Delta-G solvation = -19189.535466 eV Core-core repulsion = 16388.170660 eV Total energy + Delta-G solvation = -2801.364807 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.38423 -39.17787 -36.82234 -35.13220 -32.77865 -31.64715 -30.23092 -29.28022 -28.46001 -27.08882 -23.77855 -22.75205 -22.43228 -21.77990 -20.68085 -19.14824 -17.72372 -17.29003 -17.18459 -16.47117 -16.15952 -15.68027 -15.05735 -14.69906 -14.47598 -14.36659 -13.96088 -13.86909 -13.54381 -13.33132 -13.10313 -13.01891 -12.76420 -12.54803 -12.47085 -12.43051 -12.10305 -11.97596 -11.86258 -11.56393 -11.39387 -11.16550 -11.03073 -10.42940 -9.44968 -9.31625 -8.59676 -7.90223 -6.31254 1.06286 1.35969 1.39498 1.52691 1.60645 2.23405 2.77215 2.82334 3.36867 3.64979 3.75253 3.88592 3.94211 4.36660 4.37590 4.44776 4.49355 4.52670 4.67882 4.75930 4.76860 4.84699 4.98558 5.03758 5.07142 5.14508 5.16517 5.17961 5.24254 5.29567 5.43335 5.45481 5.62573 5.86454 5.98165 6.04328 6.22052 6.33142 6.43582 6.64968 6.91935 7.03704 7.08379 7.28413 8.38989 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038232 B = 0.004107 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.193904 B = 6815.656365 C = 7108.499617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.167 3.833 3 H 0.060 0.940 4 N -0.745 5.745 5 C 0.240 3.760 6 C -0.302 4.302 7 C -0.076 4.076 8 C -0.233 4.233 9 C 0.114 3.886 10 C -0.505 4.505 11 H 0.072 0.928 12 C 0.036 3.964 13 N -0.825 5.825 14 Si 0.981 3.019 15 H -0.262 1.262 16 H -0.265 1.265 17 H -0.260 1.260 18 C -0.313 4.313 19 C -0.097 4.097 20 H 0.087 0.913 21 C -0.112 4.112 22 C 0.038 3.962 23 N -0.688 5.688 24 C 0.045 3.955 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.036 0.964 28 H 0.393 0.607 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.286 0.714 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.344 0.656 39 H 0.046 0.954 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 -2.852 16.764 17.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.062 3.938 3 H 0.078 0.922 4 N -0.377 5.377 5 C 0.138 3.862 6 C -0.325 4.325 7 C -0.095 4.095 8 C -0.253 4.253 9 C 0.111 3.889 10 C -0.535 4.535 11 H 0.090 0.910 12 C -0.178 4.178 13 N -0.451 5.451 14 Si 0.801 3.199 15 H -0.187 1.187 16 H -0.190 1.190 17 H -0.183 1.183 18 C -0.337 4.337 19 C -0.117 4.117 20 H 0.106 0.894 21 C -0.150 4.150 22 C -0.091 4.091 23 N -0.318 5.318 24 C -0.084 4.084 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.055 0.945 28 H 0.227 0.773 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.160 0.840 39 H 0.065 0.935 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.748 -1.913 16.487 16.614 hybrid contribution 0.486 -1.383 -0.841 1.691 sum -0.262 -3.296 15.645 15.991 Atomic orbital electron populations 1.22245 0.95791 1.02142 1.01831 1.20835 0.93487 0.95957 0.83565 0.92180 1.44568 1.74781 1.11665 1.06636 1.17475 0.92048 0.91117 0.85515 1.20153 1.20406 0.93844 0.98071 1.20720 0.97619 0.98192 0.93004 1.21063 1.11524 0.95257 0.97498 1.17689 0.87261 0.91726 0.92248 1.19797 1.29841 1.12479 0.91378 0.91030 1.26749 0.94241 0.93351 1.03481 1.69921 1.22088 1.26340 1.26755 0.85227 0.79323 0.78910 0.76393 1.18669 1.18980 1.18350 1.20526 1.20584 0.98322 0.94250 1.22227 0.94585 1.00343 0.94523 0.89443 1.22542 0.98061 1.00956 0.93457 1.23106 0.89955 1.01111 0.94922 1.63018 1.06213 1.56609 1.05955 1.22615 0.95250 0.96363 0.94169 0.92324 0.90014 0.94468 0.77290 0.87284 0.87676 0.88811 0.90321 0.89204 0.91055 0.88833 0.92856 0.89252 0.84012 0.93535 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 9.23 71.98 0.66 -3.45 16 2 C 0.17 4.62 1.51 45.00 0.07 4.69 16 3 H 0.06 1.92 6.46 -2.39 -0.02 1.90 16 4 N -0.75 -25.63 4.67 -319.10 -1.49 -27.12 16 5 C 0.24 10.83 6.63 38.16 0.25 11.08 16 6 C -0.30 -13.84 8.86 22.59 0.20 -13.64 16 7 C -0.08 -3.80 10.01 22.20 0.22 -3.58 16 8 C -0.23 -13.09 8.69 22.75 0.20 -12.89 16 9 C 0.11 6.52 5.56 -21.31 -0.12 6.40 16 10 C -0.51 -28.76 9.05 23.46 0.21 -28.55 16 11 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 12 C 0.04 1.93 5.14 85.25 0.44 2.37 16 13 N -0.83 -45.27 10.99 21.82 0.24 -45.03 16 14 Si 0.98 39.79 29.59 68.60 2.03 41.82 16 15 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 16 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 17 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 18 C -0.31 -16.16 9.63 22.86 0.22 -15.94 16 19 C -0.10 -2.05 2.63 -9.91 -0.03 -2.07 16 20 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 21 C -0.11 -1.88 5.60 31.80 0.18 -1.70 16 22 C 0.04 0.60 7.55 86.65 0.65 1.25 16 23 N -0.69 -14.18 7.51 -502.21 -3.77 -17.95 16 24 C 0.05 1.06 6.95 86.45 0.60 1.66 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.08 1.63 7.26 -2.39 -0.02 1.61 16 27 H 0.04 1.15 7.70 -2.39 -0.02 1.13 16 28 H 0.39 12.38 8.61 -92.71 -0.80 11.58 16 29 H 0.11 4.45 6.08 -2.91 -0.02 4.43 16 30 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 31 H 0.09 5.51 6.20 -2.91 -0.02 5.49 16 32 H 0.29 14.14 8.30 -92.71 -0.77 13.37 16 33 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 34 H 0.07 1.33 7.73 -2.38 -0.02 1.31 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.34 5.88 8.92 -89.70 -0.80 5.08 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.70 7.41 -2.39 -0.02 1.68 16 Total: -1.00 -63.86 318.64 0.22 -63.65 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: -0.56 Total: 39.00 kcal Atomic # 6 Polarization: -58.13 SS G_CDS: 3.76 Total: -54.37 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -5.02 Total: -90.10 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -63.86 0.22 -63.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400391134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.249 kcal (2) G-P(sol) polarization free energy of solvation -63.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds