Wall clock time and date at job start Mon Mar 30 2020 06:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47692 * 2 1 4 4 N 1.46505 * 109.46953 * 239.99848 * 2 1 3 5 5 C 1.38851 * 119.99753 * 85.00340 * 4 2 1 6 6 C 1.39570 * 119.84493 * 359.73331 * 5 4 2 7 7 C 1.36342 * 120.16077 * 179.72240 * 6 5 4 8 8 C 1.40882 * 119.83653 * 0.54302 * 7 6 5 9 9 C 1.41134 * 120.15657 * 179.70343 * 8 7 6 10 10 H 1.08003 * 120.00064 * 155.10648 * 9 8 7 11 11 C 1.39866 * 119.99812 * 335.11458 * 9 8 7 12 12 N 1.30901 * 120.00063 * 342.12532 * 11 9 8 13 13 Si 1.86800 * 119.99986 * 162.12864 * 11 9 8 14 14 H 1.48500 * 109.47346 * 94.64577 * 13 11 9 15 15 H 1.48499 * 109.47361 * 214.65106 * 13 11 9 16 16 H 1.48505 * 109.47364 * 334.64784 * 13 11 9 17 17 C 1.40889 * 119.69032 * 359.72113 * 8 7 6 18 18 C 1.36343 * 119.83494 * 0.02562 * 17 8 7 19 19 C 1.53000 * 109.46914 * 120.00362 * 2 1 3 20 20 H 1.09003 * 110.27564 * 180.63041 * 19 2 1 21 21 C 1.54603 * 110.30890 * 302.82750 * 19 2 1 22 22 C 1.54933 * 102.91877 * 140.87337 * 21 19 2 23 23 N 1.48805 * 103.35387 * 322.68981 * 22 21 19 24 24 C 1.47903 * 105.67966 * 38.97826 * 23 22 21 25 25 H 1.09000 * 109.46839 * 300.00397 * 1 2 3 26 26 H 1.09000 * 109.46986 * 59.99461 * 1 2 3 27 27 H 1.08994 * 109.47692 * 179.97438 * 1 2 3 28 28 H 0.97003 * 119.99832 * 265.00293 * 4 2 1 29 29 H 1.08000 * 119.91756 * 359.96855 * 6 5 4 30 30 H 1.07997 * 120.07806 * 180.27344 * 7 6 5 31 31 H 0.96999 * 120.00144 * 180.02562 * 12 11 9 32 32 H 1.08002 * 120.08155 * 179.97438 * 17 8 7 33 33 H 1.07999 * 119.91958 * 179.97438 * 18 17 8 34 34 H 1.09000 * 110.72102 * 259.23556 * 21 19 2 35 35 H 1.09002 * 110.71772 * 22.33602 * 21 19 2 36 36 H 1.09003 * 110.66707 * 81.02690 * 22 21 19 37 37 H 1.09008 * 110.66095 * 203.98161 * 22 21 19 38 38 H 1.00902 * 110.95834 * 278.57916 * 23 22 21 39 39 H 1.08994 * 109.92176 * 215.45710 * 24 23 22 40 40 H 1.08994 * 109.91787 * 94.35385 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1509 0.0020 -2.3922 6 6 1.8128 1.3548 -2.4526 7 6 1.9459 2.0427 -3.6223 8 6 2.4152 1.3818 -4.7746 9 6 2.5496 2.0857 -5.9904 10 1 3.2507 1.7441 -6.7376 11 6 1.7749 3.2258 -6.2277 12 7 0.7007 3.4476 -5.5133 13 14 2.2733 4.4321 -7.5640 14 1 1.5522 4.1049 -8.8203 15 1 1.9268 5.8123 -7.1394 16 1 3.7373 4.3382 -7.7949 17 6 2.7493 0.0147 -4.7076 18 6 2.6161 -0.6592 -3.5299 19 6 2.0399 -0.7213 1.2492 20 1 3.1298 -0.7193 1.2681 21 6 1.4777 -0.0502 2.5235 22 6 1.1708 -1.2578 3.4443 23 7 0.6693 -2.2920 2.4992 24 6 1.5075 -2.1659 1.2871 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 2.2489 -1.6319 -1.1526 29 1 1.4487 1.8589 -1.5696 30 1 1.6881 3.0905 -3.6663 31 1 0.1633 4.2381 -5.6781 32 1 3.1092 -0.4983 -5.5872 33 1 2.8715 -1.7073 -3.4771 34 1 2.2242 0.6013 2.9776 35 1 0.5684 0.5066 2.2969 36 1 2.0773 -1.6023 3.9420 37 1 0.4062 -0.9984 4.1768 38 1 -0.3046 -2.1411 2.2826 39 1 0.9079 -2.3640 0.3987 40 1 2.3402 -2.8673 1.3369 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400420826.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:34 Heat of formation + Delta-G solvation = 21.465913 kcal Electronic energy + Delta-G solvation = -19237.462877 eV Core-core repulsion = 16437.176221 eV Total energy + Delta-G solvation = -2800.286656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.55160 -37.73834 -35.27638 -33.27916 -31.11503 -29.49221 -29.40923 -28.04350 -27.91344 -24.50159 -22.97342 -21.84374 -21.15344 -20.15290 -18.74364 -17.21030 -17.09181 -15.75024 -15.59767 -15.26440 -14.89400 -14.21807 -13.94012 -13.41676 -13.24899 -12.75078 -12.58037 -12.29791 -12.02954 -11.93069 -11.73757 -11.68614 -11.49982 -11.33973 -11.10136 -10.98003 -10.67257 -10.65515 -10.42961 -10.39300 -9.69296 -9.27568 -9.22546 -8.76934 -8.52433 -7.48553 -6.63702 -6.37807 -4.02526 2.91833 3.10545 3.15028 3.20121 3.35798 4.05857 4.10369 4.16298 4.63641 4.75131 4.78728 4.93043 5.19970 5.27860 5.33138 5.38553 5.64984 5.70207 5.72133 5.75396 5.84020 5.92622 6.04207 6.16747 6.20887 6.28459 6.36692 6.51120 6.61294 6.94223 6.96157 7.17710 7.20953 7.36401 7.57019 7.69806 7.84965 8.15967 8.30331 8.50806 8.71290 8.81166 9.06874 9.16130 10.38014 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.045813 B = 0.003967 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.031286 B = 7055.841670 C = 7396.010792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.168 3.832 3 H 0.072 0.928 4 N -0.756 5.756 5 C 0.094 3.906 6 C -0.164 4.164 7 C -0.125 4.125 8 C 0.075 3.925 9 C -0.468 4.468 10 H 0.072 0.928 11 C 0.075 3.925 12 N -0.808 5.808 13 Si 0.901 3.099 14 H -0.273 1.273 15 H -0.278 1.278 16 H -0.263 1.263 17 C -0.187 4.187 18 C -0.160 4.160 19 C -0.124 4.124 20 H 0.079 0.921 21 C -0.156 4.156 22 C 0.042 3.958 23 N -0.674 5.674 24 C 0.042 3.958 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.382 0.618 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.275 0.725 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.335 0.665 39 H 0.074 0.926 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.527 -5.017 13.395 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.061 3.939 3 H 0.090 0.910 4 N -0.391 5.391 5 C -0.003 4.003 6 C -0.186 4.186 7 C -0.145 4.145 8 C 0.072 3.928 9 C -0.499 4.499 10 H 0.090 0.910 11 C -0.140 4.140 12 N -0.436 5.436 13 Si 0.726 3.274 14 H -0.199 1.199 15 H -0.203 1.203 16 H -0.187 1.187 17 C -0.207 4.207 18 C -0.182 4.182 19 C -0.144 4.144 20 H 0.098 0.902 21 C -0.195 4.195 22 C -0.088 4.088 23 N -0.301 5.301 24 C -0.088 4.088 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.215 0.785 29 H 0.106 0.894 30 H 0.135 0.865 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.151 0.849 39 H 0.092 0.908 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.445 -5.299 13.788 14.778 hybrid contribution -0.149 1.150 -1.087 1.590 sum -0.594 -4.150 12.701 13.374 Atomic orbital electron populations 1.22442 0.97320 1.01556 1.01746 1.20502 0.92727 0.96480 0.84154 0.91049 1.43953 1.77151 1.10998 1.06961 1.17341 1.05250 0.92034 0.85672 1.20108 1.07758 0.92801 0.97932 1.20928 1.02754 0.99674 0.91103 1.17486 0.91820 0.90519 0.93009 1.19365 1.20198 1.08476 1.01867 0.90985 1.25784 0.93466 0.97973 0.96765 1.69856 1.10848 1.25552 1.37316 0.86423 0.80158 0.79738 0.81044 1.19867 1.20299 1.18675 1.20546 1.09654 0.94592 0.95887 1.19809 1.07789 0.97498 0.93086 1.22684 1.01092 0.95901 0.94771 0.90226 1.23268 1.01939 0.98782 0.95523 1.23139 1.00659 0.89637 0.95321 1.62876 1.06983 1.48741 1.11464 1.22838 0.97701 0.95296 0.92918 0.92833 0.91703 0.92968 0.78472 0.89401 0.86506 0.91383 0.89111 0.89669 0.90940 0.90459 0.90445 0.90952 0.84944 0.90775 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 8.84 37.16 0.33 -2.02 16 2 C 0.17 2.40 2.07 -67.93 -0.14 2.26 16 3 H 0.07 1.14 6.46 -51.93 -0.34 0.81 16 4 N -0.76 -12.75 5.02 -52.03 -0.26 -13.01 16 5 C 0.09 2.02 6.65 -83.69 -0.56 1.46 16 6 C -0.16 -3.82 8.73 -39.77 -0.35 -4.16 16 7 C -0.12 -3.27 8.63 -39.26 -0.34 -3.61 16 8 C 0.07 2.03 5.57 -106.79 -0.59 1.43 16 9 C -0.47 -12.80 9.03 -37.87 -0.34 -13.15 16 10 H 0.07 1.91 7.91 -52.48 -0.41 1.49 16 11 C 0.08 1.95 5.13 -17.34 -0.09 1.86 16 12 N -0.81 -21.56 10.98 55.54 0.61 -20.95 16 13 Si 0.90 19.31 29.60 -169.99 -5.03 14.28 16 14 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 15 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 16 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 17 C -0.19 -4.65 9.74 -39.26 -0.38 -5.03 16 18 C -0.16 -3.59 9.82 -39.77 -0.39 -3.98 16 19 C -0.12 -1.42 3.05 -89.25 -0.27 -1.69 16 20 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 21 C -0.16 -1.50 6.41 -24.87 -0.16 -1.66 16 22 C 0.04 0.38 7.55 -1.75 -0.01 0.36 16 23 N -0.67 -6.85 7.54 -109.87 -0.83 -7.68 16 24 C 0.04 0.46 5.96 -2.75 -0.02 0.44 16 25 H 0.05 0.62 5.99 -51.93 -0.31 0.31 16 26 H 0.06 1.07 7.63 -51.93 -0.40 0.67 16 27 H 0.05 0.67 6.44 -51.93 -0.33 0.34 16 28 H 0.38 5.85 7.61 -40.82 -0.31 5.54 16 29 H 0.09 1.87 6.02 -52.49 -0.32 1.56 16 30 H 0.12 3.19 6.18 -52.49 -0.32 2.86 16 31 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 32 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 33 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.75 5.64 -51.93 -0.29 0.46 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.34 3.16 8.92 -39.29 -0.35 2.81 16 39 H 0.07 0.86 5.77 -51.93 -0.30 0.56 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 311.33 15.07 4.69 4.69 Total: -1.00 -27.87 311.33 -9.91 -37.79 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -5.78 Total: 12.35 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -3.31 Total: -27.48 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: -0.48 Total: -41.63 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.87 -9.91 -37.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400420826.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.254 kcal (2) G-P(sol) polarization free energy of solvation -27.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds