Wall clock time and date at job start Mon Mar 30 2020 06:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47692 * 2 1 4 4 N 1.46505 * 109.46953 * 239.99848 * 2 1 3 5 5 C 1.38851 * 119.99753 * 85.00340 * 4 2 1 6 6 C 1.39570 * 119.84493 * 359.73331 * 5 4 2 7 7 C 1.36342 * 120.16077 * 179.72240 * 6 5 4 8 8 C 1.40882 * 119.83653 * 0.54302 * 7 6 5 9 9 C 1.41134 * 120.15657 * 179.70343 * 8 7 6 10 10 H 1.08003 * 120.00064 * 155.10648 * 9 8 7 11 11 C 1.39866 * 119.99812 * 335.11458 * 9 8 7 12 12 N 1.30901 * 120.00063 * 342.12532 * 11 9 8 13 13 Si 1.86800 * 119.99986 * 162.12864 * 11 9 8 14 14 H 1.48500 * 109.47346 * 94.64577 * 13 11 9 15 15 H 1.48499 * 109.47361 * 214.65106 * 13 11 9 16 16 H 1.48505 * 109.47364 * 334.64784 * 13 11 9 17 17 C 1.40889 * 119.69032 * 359.72113 * 8 7 6 18 18 C 1.36343 * 119.83494 * 0.02562 * 17 8 7 19 19 C 1.53000 * 109.46914 * 120.00362 * 2 1 3 20 20 H 1.09003 * 110.27564 * 180.63041 * 19 2 1 21 21 C 1.54603 * 110.30890 * 302.82750 * 19 2 1 22 22 C 1.54933 * 102.91877 * 140.87337 * 21 19 2 23 23 N 1.48805 * 103.35387 * 322.68981 * 22 21 19 24 24 C 1.47903 * 105.67966 * 38.97826 * 23 22 21 25 25 H 1.09000 * 109.46839 * 300.00397 * 1 2 3 26 26 H 1.09000 * 109.46986 * 59.99461 * 1 2 3 27 27 H 1.08994 * 109.47692 * 179.97438 * 1 2 3 28 28 H 0.97003 * 119.99832 * 265.00293 * 4 2 1 29 29 H 1.08000 * 119.91756 * 359.96855 * 6 5 4 30 30 H 1.07997 * 120.07806 * 180.27344 * 7 6 5 31 31 H 0.96999 * 120.00144 * 180.02562 * 12 11 9 32 32 H 1.08002 * 120.08155 * 179.97438 * 17 8 7 33 33 H 1.07999 * 119.91958 * 179.97438 * 18 17 8 34 34 H 1.09000 * 110.72102 * 259.23556 * 21 19 2 35 35 H 1.09002 * 110.71772 * 22.33602 * 21 19 2 36 36 H 1.09003 * 110.66707 * 81.02690 * 22 21 19 37 37 H 1.09008 * 110.66095 * 203.98161 * 22 21 19 38 38 H 1.00902 * 110.95834 * 278.57916 * 23 22 21 39 39 H 1.08994 * 109.92176 * 215.45710 * 24 23 22 40 40 H 1.08994 * 109.91787 * 94.35385 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1509 0.0020 -2.3922 6 6 1.8128 1.3548 -2.4526 7 6 1.9459 2.0427 -3.6223 8 6 2.4152 1.3818 -4.7746 9 6 2.5496 2.0857 -5.9904 10 1 3.2507 1.7441 -6.7376 11 6 1.7749 3.2258 -6.2277 12 7 0.7007 3.4476 -5.5133 13 14 2.2733 4.4321 -7.5640 14 1 1.5522 4.1049 -8.8203 15 1 1.9268 5.8123 -7.1394 16 1 3.7373 4.3382 -7.7949 17 6 2.7493 0.0147 -4.7076 18 6 2.6161 -0.6592 -3.5299 19 6 2.0399 -0.7213 1.2492 20 1 3.1298 -0.7193 1.2681 21 6 1.4777 -0.0502 2.5235 22 6 1.1708 -1.2578 3.4443 23 7 0.6693 -2.2920 2.4992 24 6 1.5075 -2.1659 1.2871 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 2.2489 -1.6319 -1.1526 29 1 1.4487 1.8589 -1.5696 30 1 1.6881 3.0905 -3.6663 31 1 0.1633 4.2381 -5.6781 32 1 3.1092 -0.4983 -5.5872 33 1 2.8715 -1.7073 -3.4771 34 1 2.2242 0.6013 2.9776 35 1 0.5684 0.5066 2.2969 36 1 2.0773 -1.6023 3.9420 37 1 0.4062 -0.9984 4.1768 38 1 -0.3046 -2.1411 2.2826 39 1 0.9079 -2.3640 0.3987 40 1 2.3402 -2.8673 1.3369 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400420826.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:34 Heat of formation + Delta-G solvation = 4.155930 kcal Electronic energy + Delta-G solvation = -19238.213494 eV Core-core repulsion = 16437.176221 eV Total energy + Delta-G solvation = -2801.037273 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.64521 -39.37176 -36.75245 -35.01936 -32.55170 -31.36799 -30.42399 -29.58163 -28.97006 -26.28218 -24.22833 -22.94936 -22.73633 -21.73903 -19.90950 -19.15759 -18.31495 -17.08674 -16.77725 -16.54358 -16.48226 -15.66836 -15.18820 -14.76149 -14.57863 -14.29330 -14.22652 -13.73490 -13.61773 -13.22200 -13.14461 -12.80634 -12.75888 -12.71526 -12.62602 -12.30305 -12.25841 -11.85546 -11.61274 -11.56241 -11.47049 -11.12416 -11.04375 -10.28909 -9.55963 -9.40145 -8.55255 -8.15509 -6.00636 1.10845 1.18443 1.39556 1.52120 1.58981 2.27138 2.82542 2.85338 3.31968 3.71247 3.84491 3.89641 3.96453 4.33420 4.36082 4.39013 4.41862 4.48343 4.50721 4.70555 4.73562 4.83728 4.96643 5.00655 5.03250 5.10275 5.14195 5.19174 5.27185 5.32312 5.42166 5.46009 5.69819 5.80363 5.81910 5.96684 6.18901 6.39646 6.44428 6.67784 6.88291 7.08519 7.15525 7.32517 8.48196 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.045813 B = 0.003967 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.031286 B = 7055.841670 C = 7396.010792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.166 3.834 3 H 0.055 0.945 4 N -0.745 5.745 5 C 0.116 3.884 6 C -0.173 4.173 7 C -0.144 4.144 8 C 0.035 3.965 9 C -0.508 4.508 10 H 0.067 0.933 11 C 0.032 3.968 12 N -0.842 5.842 13 Si 0.975 3.025 14 H -0.265 1.265 15 H -0.268 1.268 16 H -0.262 1.262 17 C -0.196 4.196 18 C -0.167 4.167 19 C -0.116 4.116 20 H 0.076 0.924 21 C -0.151 4.151 22 C 0.045 3.955 23 N -0.679 5.679 24 C 0.047 3.953 25 H 0.077 0.923 26 H 0.032 0.968 27 H 0.061 0.939 28 H 0.394 0.606 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.282 0.718 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.341 0.659 39 H 0.067 0.933 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.576 -5.809 15.079 16.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.060 3.940 3 H 0.073 0.927 4 N -0.379 5.379 5 C 0.017 3.983 6 C -0.195 4.195 7 C -0.164 4.164 8 C 0.032 3.968 9 C -0.539 4.539 10 H 0.085 0.915 11 C -0.179 4.179 12 N -0.471 5.471 13 Si 0.797 3.203 14 H -0.190 1.190 15 H -0.193 1.193 16 H -0.185 1.185 17 C -0.216 4.216 18 C -0.190 4.190 19 C -0.137 4.137 20 H 0.094 0.906 21 C -0.191 4.191 22 C -0.084 4.084 23 N -0.306 5.306 24 C -0.083 4.083 25 H 0.096 0.904 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.229 0.771 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.135 0.865 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.156 0.844 39 H 0.086 0.914 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.500 -6.126 15.519 16.692 hybrid contribution -0.148 1.251 -1.425 1.902 sum -0.648 -4.875 14.094 14.927 Atomic orbital electron populations 1.22352 0.96489 1.02093 1.01379 1.20651 0.93236 0.95846 0.84283 0.92660 1.44014 1.76148 1.11505 1.06230 1.17432 1.02328 0.91495 0.87077 1.20237 1.07950 0.93745 0.97552 1.20855 1.04188 0.99126 0.92226 1.17802 0.93674 0.91804 0.93498 1.19596 1.21420 1.10481 1.02425 0.91492 1.26597 0.92942 0.99182 0.99202 1.69920 1.11728 1.26331 1.39077 0.85304 0.79630 0.77339 0.78035 1.19025 1.19269 1.18544 1.20755 1.09491 0.94122 0.97213 1.20108 1.07433 0.98964 0.92466 1.22591 1.00835 0.96279 0.93963 0.90599 1.23255 1.02081 0.99135 0.94611 1.23178 1.01326 0.88729 0.95175 1.62874 1.07274 1.49338 1.11164 1.22760 0.97740 0.94662 0.93135 0.90443 0.94863 0.91961 0.77078 0.87879 0.88505 0.90808 0.88630 0.86544 0.90163 0.90315 0.90273 0.89222 0.84367 0.91414 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 8.84 71.98 0.64 -3.55 16 2 C 0.17 4.43 2.07 44.99 0.09 4.52 16 3 H 0.06 1.69 6.46 -2.39 -0.02 1.68 16 4 N -0.74 -23.69 5.02 -318.54 -1.60 -25.29 16 5 C 0.12 4.90 6.65 38.67 0.26 5.15 16 6 C -0.17 -8.12 8.73 22.15 0.19 -7.92 16 7 C -0.14 -7.84 8.63 22.48 0.19 -7.65 16 8 C 0.04 1.98 5.57 -21.27 -0.12 1.86 16 9 C -0.51 -28.94 9.03 23.38 0.21 -28.72 16 10 H 0.07 3.70 7.91 -2.91 -0.02 3.68 16 11 C 0.03 1.73 5.13 85.23 0.44 2.17 16 12 N -0.84 -46.46 10.98 21.82 0.24 -46.22 16 13 Si 0.98 40.48 29.60 68.60 2.03 42.51 16 14 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 15 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 16 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 17 C -0.20 -9.91 9.74 22.48 0.22 -9.69 16 18 C -0.17 -7.37 9.82 22.15 0.22 -7.16 16 19 C -0.12 -2.36 3.05 -9.91 -0.03 -2.39 16 20 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 21 C -0.15 -2.46 6.41 31.80 0.20 -2.26 16 22 C 0.05 0.66 7.55 86.59 0.65 1.31 16 23 N -0.68 -11.74 7.54 -501.52 -3.78 -15.52 16 24 C 0.05 0.90 5.96 86.45 0.51 1.41 16 25 H 0.08 1.60 5.99 -2.39 -0.01 1.59 16 26 H 0.03 1.06 7.63 -2.39 -0.02 1.04 16 27 H 0.06 1.46 6.44 -2.39 -0.02 1.44 16 28 H 0.39 11.01 7.61 -92.71 -0.71 10.30 16 29 H 0.10 4.42 6.02 -2.91 -0.02 4.41 16 30 H 0.10 5.57 6.18 -2.91 -0.02 5.55 16 31 H 0.28 14.12 8.30 -92.71 -0.77 13.35 16 32 H 0.10 4.60 8.06 -2.91 -0.02 4.57 16 33 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.27 5.64 -2.39 -0.01 1.26 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.34 5.35 8.92 -89.69 -0.80 4.55 16 39 H 0.07 1.39 5.77 -2.39 -0.01 1.37 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -61.80 311.33 0.13 -61.67 By element: Atomic # 1 Polarization: 36.20 SS G_CDS: -0.45 Total: 35.75 kcal Atomic # 6 Polarization: -56.59 SS G_CDS: 3.68 Total: -52.91 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -5.14 Total: -87.03 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -61.80 0.13 -61.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400420826.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.831 kcal (2) G-P(sol) polarization free energy of solvation -61.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds