Wall clock time and date at job start Mon Mar 30 2020 06:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47478 * 2 1 4 4 N 1.46505 * 109.46862 * 240.00504 * 2 1 3 5 5 C 1.38851 * 120.00056 * 85.00115 * 4 2 1 6 6 C 1.39578 * 119.84331 * 179.97438 * 5 4 2 7 7 C 1.36335 * 120.16021 * 180.02562 * 6 5 4 8 8 C 1.40880 * 119.83920 * 0.02562 * 7 6 5 9 9 C 1.41143 * 120.15448 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99694 * 206.70346 * 9 8 7 11 11 C 1.39861 * 120.00029 * 26.70526 * 9 8 7 12 12 N 1.30902 * 119.99900 * 198.15365 * 11 9 8 13 13 Si 1.86803 * 120.00117 * 18.14548 * 11 9 8 14 14 H 1.48495 * 109.47215 * 264.83027 * 13 11 9 15 15 H 1.48493 * 109.46988 * 24.83287 * 13 11 9 16 16 H 1.48502 * 109.46967 * 144.82591 * 13 11 9 17 17 C 1.40887 * 119.69123 * 0.26866 * 8 7 6 18 18 C 1.36346 * 119.83175 * 359.45155 * 17 8 7 19 19 C 1.52992 * 109.47217 * 120.00560 * 2 1 3 20 20 H 1.09002 * 110.27921 * 59.36168 * 19 2 1 21 21 C 1.54596 * 110.30855 * 297.16884 * 19 2 1 22 22 C 1.54941 * 102.92505 * 219.12727 * 21 19 2 23 23 N 1.48535 * 103.22536 * 37.41168 * 22 21 19 24 24 C 1.47904 * 105.82182 * 320.79704 * 23 22 21 25 25 H 1.09006 * 109.46904 * 59.99705 * 1 2 3 26 26 H 1.09003 * 109.47230 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47236 * 299.99463 * 1 2 3 28 28 H 0.97000 * 119.99510 * 264.99430 * 4 2 1 29 29 H 1.08001 * 119.91737 * 359.97438 * 6 5 4 30 30 H 1.08005 * 120.07943 * 179.97438 * 7 6 5 31 31 H 0.97001 * 119.99733 * 179.97438 * 12 11 9 32 32 H 1.08001 * 120.08605 * 179.69888 * 17 8 7 33 33 H 1.08003 * 119.91471 * 180.27129 * 18 17 8 34 34 H 1.09003 * 110.72406 * 337.48229 * 21 19 2 35 35 H 1.09002 * 110.72526 * 100.76694 * 21 19 2 36 36 H 1.09001 * 110.66305 * 278.98078 * 22 21 19 37 37 H 1.08995 * 110.66919 * 155.84968 * 22 21 19 38 38 H 1.00900 * 111.00082 * 200.28095 * 23 22 21 39 39 H 1.09001 * 109.91628 * 265.97810 * 24 23 22 40 40 H 1.08997 * 110.08360 * 144.77649 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1509 0.0022 -2.3923 6 6 2.6169 -0.6588 -3.5299 7 6 2.7501 0.0153 -4.7074 8 6 2.4166 1.3824 -4.7742 9 6 2.5514 2.0866 -5.9899 10 1 2.7226 3.1529 -5.9802 11 6 2.4631 1.4035 -7.2072 12 7 2.9286 1.9522 -8.3008 13 14 1.6813 -0.2918 -7.2724 14 1 2.7397 -1.3290 -7.1770 15 1 0.7350 -0.4444 -6.1383 16 1 0.9476 -0.4495 -8.5538 17 6 1.9527 2.0447 -3.6204 18 6 1.8190 1.3566 -2.4509 19 6 2.0400 -0.7213 1.2491 20 1 1.6747 -1.7481 1.2680 21 6 1.5947 0.0323 2.5233 22 6 2.8355 -0.0809 3.4444 23 7 3.9736 0.0498 2.4989 24 6 3.5794 -0.7009 1.2871 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 2.2490 -1.6317 -1.1527 29 1 2.8734 -1.7065 -3.4769 30 1 3.1112 -0.4974 -5.5868 31 1 2.8677 1.4782 -9.1450 32 1 1.6998 3.0938 -3.6632 33 1 1.4594 1.8619 -1.5668 34 1 1.3760 1.0761 2.2975 35 1 0.7315 -0.4543 2.9775 36 1 2.8581 -1.0505 3.9419 37 1 2.8474 0.7279 4.1749 38 1 4.8204 -0.3267 2.8980 39 1 3.9630 -1.7198 1.3403 40 1 3.9662 -0.2048 0.3970 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400420829.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:48 Heat of formation + Delta-G solvation = 20.542871 kcal Electronic energy + Delta-G solvation = -19273.699021 eV Core-core repulsion = 16473.372339 eV Total energy + Delta-G solvation = -2800.326682 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.34570 -37.94194 -35.50113 -33.29776 -31.60025 -29.86147 -29.50505 -28.42173 -28.14477 -24.29922 -22.62618 -21.66456 -21.33494 -20.24695 -19.68214 -17.24633 -17.00292 -16.31217 -15.93746 -14.98546 -14.74584 -14.07174 -13.70991 -13.60162 -13.19502 -12.86453 -12.64633 -12.62739 -12.29055 -12.26474 -12.22444 -11.86409 -11.64116 -11.37637 -11.14256 -11.08413 -10.75044 -10.62901 -10.41945 -10.12639 -9.88709 -9.44675 -9.16732 -8.69320 -8.65165 -7.71882 -6.75787 -6.58516 -4.13077 2.74199 2.84962 3.20782 3.31915 3.42955 4.06839 4.11498 4.13634 4.54900 4.62114 4.67616 4.79035 5.07464 5.29627 5.37548 5.41566 5.54187 5.58364 5.61465 5.73301 5.81813 5.85339 5.98870 6.04501 6.07874 6.11324 6.22289 6.45238 6.56990 6.64640 6.74265 6.95443 7.14026 7.16888 7.35804 7.42983 7.65350 7.97376 8.09809 8.36878 8.51798 8.61458 8.88264 9.01182 10.28490 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.040120 B = 0.004334 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.743314 B = 6459.163721 C = 6514.398464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.169 3.831 3 H 0.077 0.923 4 N -0.755 5.755 5 C 0.093 3.907 6 C -0.142 4.142 7 C -0.202 4.202 8 C 0.060 3.940 9 C -0.452 4.452 10 H 0.086 0.914 11 C 0.082 3.918 12 N -0.823 5.823 13 Si 0.912 3.088 14 H -0.275 1.275 15 H -0.246 1.246 16 H -0.296 1.296 17 C -0.172 4.172 18 C -0.145 4.145 19 C -0.104 4.104 20 H 0.073 0.927 21 C -0.115 4.115 22 C 0.036 3.964 23 N -0.672 5.672 24 C 0.044 3.956 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.383 0.617 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.281 0.719 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.335 0.665 39 H 0.035 0.965 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.341 -6.899 18.548 19.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.062 3.938 3 H 0.095 0.905 4 N -0.389 5.389 5 C -0.004 4.004 6 C -0.164 4.164 7 C -0.222 4.222 8 C 0.056 3.944 9 C -0.482 4.482 10 H 0.104 0.896 11 C -0.135 4.135 12 N -0.449 5.449 13 Si 0.740 3.260 14 H -0.202 1.202 15 H -0.169 1.169 16 H -0.224 1.224 17 C -0.192 4.192 18 C -0.167 4.167 19 C -0.123 4.123 20 H 0.091 0.909 21 C -0.153 4.153 22 C -0.093 4.093 23 N -0.301 5.301 24 C -0.085 4.085 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.216 0.784 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.150 0.850 39 H 0.054 0.946 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.495 -6.007 18.098 19.232 hybrid contribution -0.098 -2.146 0.044 2.149 sum -2.593 -8.154 18.142 20.058 Atomic orbital electron populations 1.22333 0.97026 1.01617 1.01751 1.20644 0.92701 0.96675 0.83739 0.90540 1.43940 1.77004 1.11052 1.06946 1.17253 1.05636 0.91777 0.85732 1.19869 1.05984 0.97753 0.92814 1.20555 1.09095 0.96085 0.96426 1.17631 0.91671 0.91427 0.93660 1.19311 1.42906 0.97240 0.88739 0.89644 1.26077 0.92720 0.99436 0.95226 1.69742 1.35098 1.39585 1.00513 0.86342 0.80524 0.81659 0.77486 1.20168 1.16901 1.22421 1.20597 1.06350 0.98907 0.93364 1.20051 1.06358 0.92711 0.97532 1.22271 0.95052 0.99709 0.95309 0.90875 1.22518 0.96929 1.01480 0.94405 1.23051 0.91185 0.99820 0.95290 1.63071 1.05002 1.56384 1.05671 1.22745 0.94854 0.96125 0.94797 0.91919 0.93110 0.92736 0.78424 0.89165 0.88389 0.90916 0.88314 0.88687 0.90294 0.91105 0.94441 0.90199 0.85012 0.94631 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 9.21 37.16 0.34 -1.77 16 2 C 0.17 2.25 1.50 -67.93 -0.10 2.14 16 3 H 0.08 1.16 6.44 -51.93 -0.33 0.82 16 4 N -0.76 -11.84 4.64 -52.03 -0.24 -12.08 16 5 C 0.09 1.87 6.65 -83.69 -0.56 1.32 16 6 C -0.14 -3.10 9.82 -39.77 -0.39 -3.49 16 7 C -0.20 -4.99 7.06 -39.27 -0.28 -5.27 16 8 C 0.06 1.56 5.19 -106.79 -0.55 1.00 16 9 C -0.45 -12.71 9.57 -37.87 -0.36 -13.08 16 10 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 11 C 0.08 2.23 5.42 -17.34 -0.09 2.14 16 12 N -0.82 -22.97 13.93 55.54 0.77 -22.20 16 13 Si 0.91 21.74 24.42 -169.99 -4.15 17.59 16 14 H -0.27 -6.37 6.66 56.52 0.38 -5.99 16 15 H -0.25 -5.98 6.76 56.52 0.38 -5.60 16 16 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 17 C -0.17 -4.09 9.74 -39.26 -0.38 -4.47 16 18 C -0.14 -3.05 8.74 -39.77 -0.35 -3.40 16 19 C -0.10 -1.11 2.63 -89.27 -0.23 -1.35 16 20 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 21 C -0.11 -1.07 5.60 -24.87 -0.14 -1.21 16 22 C 0.04 0.32 7.55 -1.89 -0.01 0.30 16 23 N -0.67 -7.13 7.51 -110.08 -0.83 -7.96 16 24 C 0.04 0.50 6.95 -2.75 -0.02 0.48 16 25 H 0.06 0.92 7.66 -51.93 -0.40 0.52 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.57 7.26 -51.93 -0.38 0.20 16 28 H 0.38 5.44 8.60 -40.82 -0.35 5.09 16 29 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.10 2.45 4.29 -52.48 -0.22 2.22 16 31 H 0.28 7.13 8.30 -40.82 -0.34 6.79 16 32 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.10 1.79 6.04 -52.48 -0.32 1.47 16 34 H 0.08 0.79 7.73 -51.93 -0.40 0.39 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.33 2.97 8.92 -39.29 -0.35 2.62 16 39 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 1.27 7.41 -51.93 -0.38 0.88 16 LS Contribution 312.34 15.07 4.71 4.71 Total: -1.00 -28.70 312.34 -8.99 -37.69 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.12 Total: 8.89 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -3.13 Total: -26.64 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.29 Total: -42.24 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.15 Total: 17.59 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.70 -8.99 -37.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400420829.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.235 kcal (2) G-P(sol) polarization free energy of solvation -28.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds